DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48380 AT1G48380 |
| fragaria_vesca | FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 |
| malus_domestica | MD14G1245900.v1.1 |
| prunus_persica | Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 |
| pyrus_communis | pycom14g20680 |
| rosa_chinensis | RchiOBHm_Chr7g0177071 |
| rosa_laevigata | RLG00000005559 |
| rosa_multiflora | Rmu_sc0005310.1_g000026 |
| rosa_roxburghii | Rroxscaffold_3G00276120 |
| rosa_rugosa | Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500 |
| rosa_samantha | Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000 |
| rosa_wichuraiana | Rw7G000240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 560 |
| AccII | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| AciI | CCGC | 7 cut(s) | 7, 28, 85, 148, 217, 1193, 1265 |
| AclWI | GGATC | 3 cut(s) | 127, 909, 1359 |
| AcoI | YGGCCR | 1 cut(s) | 1183 |
| AcsI | RAATTY | 1 cut(s) | 734 |
| AcuI | CTGAAG | 1 cut(s) | 816 |
| AfaI | GTAC | 1 cut(s) | 1113 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 170, 266, 378, 407, 465, 993 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AjnI | CCWGG | 3 cut(s) | 244, 1229, 1278 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 498, 530 |
| AleI | CACNNNNGTG | 1 cut(s) | 849 |
| AluBI | AGCT | 7 cut(s) | 124, 752, 794, 873, 917, 959, 1117 |
| AluI | AGCT | 7 cut(s) | 124, 752, 794, 873, 917, 959, 1117 |
| Alw21I | GWGCWC | 1 cut(s) | 919 |
| AlwI | GGATC | 3 cut(s) | 127, 909, 1359 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 1 cut(s) | 494 |
| AoxI | GGCC | 3 cut(s) | 247, 1150, 1183 |
| ApeKI | GCWGC | 3 cut(s) | 82, 184, 1373 |
| ApoI | RAATTY | 1 cut(s) | 734 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 959, 991 |
| AseI | ATTAAT | 1 cut(s) | 686 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspLEI | GCGC | 5 cut(s) | 7, 82, 152, 154, 569 |
| AspS9I | GGNCC | 3 cut(s) | 9, 1151, 1226 |
| AvaI | CYCGRG | 1 cut(s) | 494 |
| AvaII | GGWCC | 2 cut(s) | 9, 1226 |
| AxyI | CCTNAGG | 2 cut(s) | 72, 519 |
| BalI | TGGCCA | 1 cut(s) | 1185 |
| BanII | GRGCYC | 1 cut(s) | 919 |
| BbsI | GAAGAC | 1 cut(s) | 826 |
| Bbv12I | GWGCWC | 1 cut(s) | 919 |
| BbvCI | CCTCAGC | 1 cut(s) | 790 |
| BbvI | GCAGC | 3 cut(s) | 94, 196, 1360 |
| BciT130I | CCWGG | 3 cut(s) | 246, 1231, 1280 |
| BciVI | GTATCC | 1 cut(s) | 1339 |
| BfmI | CTRYAG | 1 cut(s) | 723 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BfuAI | ACCTGC | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 1339 |
| BisI | GCNGC | 4 cut(s) | 83, 185, 1193, 1374 |
| BlsI | GCNGC | 4 cut(s) | 84, 186, 1194, 1375 |
| Bme1390I | CCNGG | 3 cut(s) | 246, 1231, 1280 |
| Bme18I | GGWCC | 2 cut(s) | 9, 1226 |
| BmeT110I | CYCGRG | 1 cut(s) | 494 |
| BmgT120I | GGNCC | 3 cut(s) | 9, 1151, 1226 |
| BmiI | GGNNCC | 1 cut(s) | 1228 |
| BmrFI | CCNGG | 3 cut(s) | 246, 1231, 1280 |
| BmsI | GCATC | 5 cut(s) | 451, 871, 1175, 1210, 1252 |
| BpiI | GAAGAC | 1 cut(s) | 826 |
| BpmI | CTGGAG | 2 cut(s) | 780, 1078 |
| Bpu10I | CCTNAGC | 1 cut(s) | 790 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| BsaBI | GATNNNNATC | 2 cut(s) | 489, 1350 |
| BsaJI | CCNNGG | 6 cut(s) | 244, 402, 495, 1154, 1229, 1251 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 170, 266, 378, 407, 465, 993 |
| Bse1I | ACTGG | 1 cut(s) | 701 |
| Bse21I | CCTNAGG | 2 cut(s) | 72, 519 |
| Bse8I | GATNNNNATC | 2 cut(s) | 489, 1350 |
| BseBI | CCWGG | 3 cut(s) | 246, 1231, 1280 |
| BseDI | CCNNGG | 6 cut(s) | 244, 402, 495, 1154, 1229, 1251 |
| BseGI | GGATG | 3 cut(s) | 1225, 1267, 1318 |
| BseJI | GATNNNNATC | 2 cut(s) | 489, 1350 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 170, 266, 378, 407, 465, 993 |
| BseMII | CTCAG | 8 cut(s) | 63, 141, 227, 522, 537, 804, 883, 1347 |
| BseNI | ACTGG | 1 cut(s) | 701 |
| BsePI | GCGCGC | 1 cut(s) | 150 |
| BseXI | GCAGC | 3 cut(s) | 94, 196, 1360 |
| BseYI | CCCAGC | 1 cut(s) | 992 |
| Bsh1236I | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| BshFI | GGCC | 3 cut(s) | 249, 1152, 1185 |
| BsiHKAI | GWGCWC | 1 cut(s) | 919 |
| BsiHKCI | CYCGRG | 1 cut(s) | 494 |
| BslFI | GGGAC | 4 cut(s) | 370, 490, 549, 1009 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 170, 266, 378, 407, 465, 993 |
| BsmFI | GGGAC | 4 cut(s) | 370, 490, 549, 1009 |
| BsnI | GGCC | 3 cut(s) | 249, 1152, 1185 |
| BsoBI | CYCGRG | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 1 cut(s) | 919 |
| Bsp143I | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| BspACI | CCGC | 7 cut(s) | 7, 28, 85, 148, 217, 1193, 1265 |
| BspANI | GGCC | 3 cut(s) | 249, 1152, 1185 |
| BspCNI | CTCAG | 8 cut(s) | 64, 140, 226, 523, 538, 803, 882, 1346 |
| BspFNI | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| BspLI | GGNNCC | 1 cut(s) | 1228 |
| BspMAI | CTGCAG | 1 cut(s) | 727 |
| BspMI | ACCTGC | 1 cut(s) | 560 |
| BspPI | GGATC | 3 cut(s) | 127, 909, 1359 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 701 |
| BssECI | CCNNGG | 6 cut(s) | 244, 402, 495, 1154, 1229, 1251 |
| BssHII | GCGCGC | 1 cut(s) | 150 |
| BssMI | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| BssT1I | CCWWGG | 3 cut(s) | 402, 1154, 1251 |
| Bst2UI | CCWGG | 3 cut(s) | 246, 1231, 1280 |
| Bst4CI | ACNGT | 2 cut(s) | 173, 848 |
| Bst6I | CTCTTC | 5 cut(s) | 83, 239, 621, 1129, 1302 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 722, 1247 |
| BstC8I | GCNNGC | 2 cut(s) | 152, 1100 |
| BstF5I | GGATG | 3 cut(s) | 1225, 1267, 1318 |
| BstFNI | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| BstHHI | GCGC | 5 cut(s) | 7, 82, 152, 154, 569 |
| BstKTI | GATC | 4 cut(s) | 135, 279, 904, 1354 |
| BstMBI | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 91, 151, 722, 1247 |
| BstNI | CCWGG | 3 cut(s) | 246, 1231, 1280 |
| BstNSI | RCATGY | 1 cut(s) | 1102 |
| BstSCI | CCNGG | 3 cut(s) | 244, 1229, 1278 |
| BstSFI | CTRYAG | 1 cut(s) | 723 |
| BstUI | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| BstV1I | GCAGC | 3 cut(s) | 94, 196, 1360 |
| BstV2I | GAAGAC | 1 cut(s) | 826 |
| BstX2I | RGATCY | 2 cut(s) | 132, 1351 |
| BstYI | RGATCY | 2 cut(s) | 132, 1351 |
| Bsu36I | CCTNAGG | 2 cut(s) | 72, 519 |
| BsuI | GTATCC | 1 cut(s) | 1339 |
| BsuRI | GGCC | 3 cut(s) | 249, 1152, 1185 |
| BtsCI | GGATG | 3 cut(s) | 1225, 1267, 1318 |
| BveI | ACCTGC | 1 cut(s) | 560 |
| Cac8I | GCNNGC | 2 cut(s) | 152, 1100 |
| CaiI | CAGNNNCTG | 1 cut(s) | 71 |
| CfoI | GCGC | 5 cut(s) | 7, 82, 152, 154, 569 |
| Cfr13I | GGNCC | 3 cut(s) | 9, 1151, 1226 |
| Csp6I | GTAC | 1 cut(s) | 1112 |
| CviAII | CATG | 4 cut(s) | 188, 421, 1028, 1099 |
| CviQI | GTAC | 1 cut(s) | 1112 |
| DpnI | GATC | 4 cut(s) | 134, 278, 903, 1353 |
| DpnII | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| EaeI | YGGCCR | 1 cut(s) | 1183 |
| Eam1104I | CTCTTC | 5 cut(s) | 83, 239, 621, 1129, 1302 |
| EarI | CTCTTC | 5 cut(s) | 83, 239, 621, 1129, 1302 |
| Ecl136II | GAGCTC | 1 cut(s) | 917 |
| Eco130I | CCWWGG | 3 cut(s) | 402, 1154, 1251 |
| Eco24I | GRGCYC | 1 cut(s) | 919 |
| Eco47I | GGWCC | 2 cut(s) | 9, 1226 |
| Eco53kI | GAGCTC | 1 cut(s) | 917 |
| Eco57I | CTGAAG | 1 cut(s) | 816 |
| Eco81I | CCTNAGG | 2 cut(s) | 72, 519 |
| Eco88I | CYCGRG | 1 cut(s) | 494 |
| EcoICRI | GAGCTC | 1 cut(s) | 917 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1226 |
| EcoRII | CCWGG | 3 cut(s) | 244, 1229, 1278 |
| EcoT14I | CCWWGG | 3 cut(s) | 402, 1154, 1251 |
| EcoT38I | GRGCYC | 1 cut(s) | 919 |
| ErhI | CCWWGG | 3 cut(s) | 402, 1154, 1251 |
| FaeI | CATG | 4 cut(s) | 191, 424, 1031, 1102 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 218, 250, 492, 524, 1101, 1133 |
| FaqI | GGGAC | 4 cut(s) | 370, 490, 549, 1009 |
| FatI | CATG | 4 cut(s) | 187, 420, 1027, 1098 |
| FauI | CCCGC | 2 cut(s) | 155, 1258 |
| FauNDI | CATATG | 1 cut(s) | 619 |
| Fnu4HI | GCNGC | 4 cut(s) | 83, 185, 1193, 1374 |
| FokI | GGATG | 3 cut(s) | 1232, 1274, 1325 |
| FriOI | GRGCYC | 1 cut(s) | 919 |
| Fsp4HI | GCNGC | 4 cut(s) | 83, 185, 1193, 1374 |
| GlaI | GCGC | 5 cut(s) | 6, 81, 151, 153, 568 |
| GluI | GCNGC | 4 cut(s) | 83, 185, 1193, 1374 |
| GsaI | CCCAGC | 1 cut(s) | 996 |
| GsuI | CTGGAG | 2 cut(s) | 780, 1078 |
| HaeIII | GGCC | 3 cut(s) | 249, 1152, 1185 |
| HhaI | GCGC | 5 cut(s) | 7, 82, 152, 154, 569 |
| Hin1II | CATG | 4 cut(s) | 191, 424, 1031, 1102 |
| Hin6I | GCGC | 5 cut(s) | 5, 80, 150, 152, 567 |
| HinP1I | GCGC | 5 cut(s) | 5, 80, 150, 152, 567 |
| HindIII | AAGCTT | 1 cut(s) | 750 |
| Hpy166II | GTNNAC | 1 cut(s) | 1090 |
| Hpy188I | TCNGA | 8 cut(s) | 130, 342, 387, 460, 547, 667, 955, 1336 |
| Hpy188III | TCNNGA | 2 cut(s) | 494, 759 |
| Hpy8I | GTNNAC | 1 cut(s) | 1090 |
| HpyAV | CCTTC | 7 cut(s) | 41, 118, 174, 250, 685, 791, 1210 |
| HpyCH4III | ACNGT | 2 cut(s) | 173, 848 |
| HpyCH4IV | ACGT | 1 cut(s) | 1162 |
| HpyCH4V | TGCA | 7 cut(s) | 140, 394, 725, 884, 1102, 1166, 1223 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 91, 151, 722, 1247 |
| HpySE526I | ACGT | 1 cut(s) | 1162 |
| Hsp92II | CATG | 4 cut(s) | 191, 424, 1031, 1102 |
| HspAI | GCGC | 5 cut(s) | 5, 80, 150, 152, 567 |
| Kzo9I | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| LmnI | GCTCC | 1 cut(s) | 914 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 196, 1360 |
| LweI | GCATC | 5 cut(s) | 451, 871, 1175, 1210, 1252 |
| MaeII | ACGT | 1 cut(s) | 1162 |
| MaeIII | GTNAC | 1 cut(s) | 975 |
| MalI | GATC | 4 cut(s) | 134, 278, 903, 1353 |
| MboI | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| MflI | RGATCY | 2 cut(s) | 132, 1351 |
| MhlI | GDGCHC | 1 cut(s) | 919 |
| MlsI | TGGCCA | 1 cut(s) | 1185 |
| MluCI | AATT | 5 cut(s) | 326, 524, 658, 683, 734 |
| MluNI | TGGCCA | 1 cut(s) | 1185 |
| MlyI | GAGTC | 4 cut(s) | 352, 983, 1007, 1085 |
| MmeI | TCCRAC | 2 cut(s) | 138, 796 |
| Mox20I | TGGCCA | 1 cut(s) | 1185 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MscI | TGGCCA | 1 cut(s) | 1185 |
| MseI | TTAA | 3 cut(s) | 180, 686, 1065 |
| MslI | CAYNNNNRTG | 2 cut(s) | 39, 849 |
| Msp20I | TGGCCA | 1 cut(s) | 1185 |
| MspA1I | CMGCKG | 3 cut(s) | 85, 217, 794 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MspR9I | CCNGG | 3 cut(s) | 246, 1231, 1280 |
| MvaI | CCWGG | 3 cut(s) | 246, 1231, 1280 |
| MvnI | CGCG | 4 cut(s) | 7, 80, 150, 152 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 91, 151, 722, 1247 |
| NdeI | CATATG | 1 cut(s) | 619 |
| NdeII | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| NlaIII | CATG | 4 cut(s) | 191, 424, 1031, 1102 |
| NlaIV | GGNNCC | 1 cut(s) | 1228 |
| NmuCI | GTSAC | 1 cut(s) | 975 |
| NspI | RCATGY | 1 cut(s) | 1102 |
| OliI | CACNNNNGTG | 1 cut(s) | 849 |
| PaeI | GCATGC | 1 cut(s) | 1102 |
| PauI | GCGCGC | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 7 cut(s) | 490, 767, 827, 941, 1178, 1205, 1337 |
| PflFI | GACNNNGTC | 1 cut(s) | 13 |
| PkrI | GCNGC | 4 cut(s) | 84, 186, 1194, 1375 |
| PleI | GAGTC | 4 cut(s) | 352, 982, 1007, 1085 |
| PpsI | GAGTC | 4 cut(s) | 352, 982, 1007, 1085 |
| PpuMI | RGGWCCY | 1 cut(s) | 1226 |
| PshBI | ATTAAT | 1 cut(s) | 686 |
| Psp124BI | GAGCTC | 1 cut(s) | 919 |
| Psp5II | RGGWCCY | 1 cut(s) | 1226 |
| Psp6I | CCWGG | 3 cut(s) | 244, 1229, 1278 |
| PspFI | CCCAGC | 1 cut(s) | 992 |
| PspGI | CCWGG | 3 cut(s) | 244, 1229, 1278 |
| PspN4I | GGNNCC | 1 cut(s) | 1228 |
| PspPI | GGNCC | 3 cut(s) | 9, 1151, 1226 |
| PspPPI | RGGWCCY | 1 cut(s) | 1226 |
| PstI | CTGCAG | 1 cut(s) | 727 |
| PstNI | CAGNNNCTG | 1 cut(s) | 71 |
| PsuI | RGATCY | 2 cut(s) | 132, 1351 |
| PsyI | GACNNNGTC | 1 cut(s) | 13 |
| PteI | GCGCGC | 1 cut(s) | 150 |
| PvuII | CAGCTG | 1 cut(s) | 794 |
| RsaI | GTAC | 1 cut(s) | 1113 |
| RsaNI | GTAC | 1 cut(s) | 1112 |
| RseI | CAYNNNNRTG | 2 cut(s) | 39, 849 |
| SacI | GAGCTC | 1 cut(s) | 919 |
| SaqAI | TTAA | 3 cut(s) | 180, 686, 1065 |
| SatI | GCNGC | 4 cut(s) | 83, 185, 1193, 1374 |
| Sau3AI | GATC | 4 cut(s) | 132, 276, 901, 1351 |
| Sau96I | GGNCC | 3 cut(s) | 9, 1151, 1226 |
| SchI | GAGTC | 4 cut(s) | 352, 983, 1007, 1085 |
| ScrFI | CCNGG | 3 cut(s) | 246, 1231, 1280 |
| SduI | GDGCHC | 1 cut(s) | 919 |
| SfaNI | GCATC | 5 cut(s) | 451, 871, 1175, 1210, 1252 |
| SfcI | CTRYAG | 1 cut(s) | 723 |
| SinI | GGWCC | 2 cut(s) | 9, 1226 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 39, 849 |
| SmlI | CTYRAG | 2 cut(s) | 179, 287 |
| SmoI | CTYRAG | 2 cut(s) | 179, 287 |
| SphI | GCATGC | 1 cut(s) | 1102 |
| Sse9I | AATT | 5 cut(s) | 326, 524, 658, 683, 734 |
| SsiI | CCGC | 7 cut(s) | 7, 28, 85, 148, 217, 1193, 1265 |
| SstI | GAGCTC | 1 cut(s) | 919 |
| StyD4I | CCNGG | 3 cut(s) | 244, 1229, 1278 |
| StyI | CCWWGG | 3 cut(s) | 402, 1154, 1251 |
| TaaI | ACNGT | 2 cut(s) | 173, 848 |
| TaiI | ACGT | 1 cut(s) | 1165 |
| TaqI | TCGA | 4 cut(s) | 20, 438, 552, 706 |
| TasI | AATT | 5 cut(s) | 326, 524, 658, 683, 734 |
| TatI | WGTACW | 1 cut(s) | 1111 |
| TauI | GCSGC | 1 cut(s) | 1195 |
| TfiI | GAWTC | 7 cut(s) | 490, 767, 827, 941, 1178, 1205, 1337 |
| Tru1I | TTAA | 3 cut(s) | 180, 686, 1065 |
| Tru9I | TTAA | 3 cut(s) | 180, 686, 1065 |
| TseFI | GTSAC | 1 cut(s) | 975 |
| TseI | GCWGC | 3 cut(s) | 82, 184, 1373 |
| Tsp45I | GTSAC | 1 cut(s) | 975 |
| TspGWI | ACGGA | 1 cut(s) | 1364 |
| Tth111I | GACNNNGTC | 1 cut(s) | 13 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 2 cut(s) | 9, 1226 |
| VspI | ATTAAT | 1 cut(s) | 686 |
| XapI | RAATTY | 1 cut(s) | 734 |
| XceI | RCATGY | 1 cut(s) | 1102 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |