MD14G1245900.v1.1

DNA-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
32366823 .. 32378952
12130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1245900.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGCGCGGACCTCGTCATCGAAGAAGCGGAAACACGAAGATGATGAAGGGGCAGAGGCAGAGGCAGAACCTGAGGTCGCGCAGCGGAAGAGGCTCAAAGCCCTCGCCTTCTCCAACAACCAGCTCTCAGAGATCCCTGCAAAGCCCCGCGCGCCTCTCACACCTTCAAACGGTGTCCTTAAGCAGCATGGCAAGGACATTGTGAAGAAATCTCAGCGGAAGAACAAGTTCCTCTTCTCCTTCCCTGGCCTCCTTGCCCCCATTGGAGGTGGTAAGATCGGCGACCTCAAGGATTTGGACACCAAGAACCCCGTCCTCTACCTCCAATTCCCTCTGGGTCAGATGAAGTTGTTTGGGACTCTTGTGTTCCCCAAGAACAGGTATCTGACAATGCAGTTCCCCAAGGGTGGAAAGAGTGTCATGTGCGAGGACTACTTCGATAATATGATTGTATTTTCCGATGCTTGGTGGATTGGGACAAAAGATGAGAATCCCGAGGAAGCCCAACTTGATTTTCCTAAGGAATTGACTGAGGGACAACACTCTGAGTTCGACTTTCAAGGTGGCGCAGGTTCAACATCTGCCAAAAAGCAAAGTGATAGTAAAAATGAAACTACATATGTTGAAGAGTATTCCCCACATAACAAGGTTGAAGATAATTTATCAGATGAAGAAAACAATGAATTAATGAAGGCAACACCAGTTCGACATTCAGCAAGAACTGCAGGAAAAAAATTCAAGTTTGGAGAAGCTTCTTCTGGAGATGATTCTGCTGAAAGTGATACCCCCTCAGCTGAAGGAGAAGATAAAAAAGTTGGAAGACTTGATTCTTCATCTGGGAAGCACAGTAGTGGAAAGACTGACAATCTCAGCTTTGGAGATGCAGACATTGATAATGAGGATCGTATGAAAGGAGCTCAAACTCCCAAGCAAAATGAAGATTCCTCTCTGTCCGAAGCTAAATCAAAGAAAGAGTCACATTCTGCCTTTGCTGGGACTACATCTAAAGAGGACTCTCATAGCAATCATGGTTCGCTCATTCAAACTACTATATCTACATTGTTTAAGAAAGTGGAGAAGAAGAAAGTGGACTCCAGCATGCAAAGTCAAGTACAGCTTCCCTCTTCACAGGTTCATAAAACACCAAAAGGCCCAAGGAAACGTGCATCTCCCAAAGATTCTGGCCAGAAGCCGCACCAAACTGATTCAAGGAAGAAGGATGCAGGACCCAGGAAAAAGGCAAAAACTGCCAAGGAAAAGGATGCGGGAGGCAAAAGCCTGGCAAAGAAGAAAAAAAATGAGGTTGAAGAGGATGATATTGAAGAAAGCACCTCAGAATCGCAGGATACGGATCTTAGTGATGAAGATTGGGCTGCTTGA

Protein Analysis

460

Amino Acids

50.51

Weight (kDa)

6.86

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 560
AccII CGCG 4 cut(s) 7, 80, 150, 152
AciI CCGC 7 cut(s) 7, 28, 85, 148, 217, 1193, 1265
AclWI GGATC 3 cut(s) 127, 909, 1359
AcoI YGGCCR 1 cut(s) 1183
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 1 cut(s) 1113
AfiI CCNNNNNNNGG 6 cut(s) 170, 266, 378, 407, 465, 993
AflII CTTAAG 1 cut(s) 179
AjnI CCWGG 3 cut(s) 244, 1229, 1278
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 849
AluBI AGCT 7 cut(s) 124, 752, 794, 873, 917, 959, 1117
AluI AGCT 7 cut(s) 124, 752, 794, 873, 917, 959, 1117
Alw21I GWGCWC 1 cut(s) 919
AlwI GGATC 3 cut(s) 127, 909, 1359
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 3 cut(s) 247, 1150, 1183
ApeKI GCWGC 3 cut(s) 82, 184, 1373
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AseI ATTAAT 1 cut(s) 686
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 5 cut(s) 7, 82, 152, 154, 569
AspS9I GGNCC 3 cut(s) 9, 1151, 1226
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 2 cut(s) 9, 1226
AxyI CCTNAGG 2 cut(s) 72, 519
BalI TGGCCA 1 cut(s) 1185
BanII GRGCYC 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 919
BbvCI CCTCAGC 1 cut(s) 790
BbvI GCAGC 3 cut(s) 94, 196, 1360
BciT130I CCWGG 3 cut(s) 246, 1231, 1280
BciVI GTATCC 1 cut(s) 1339
BfmI CTRYAG 1 cut(s) 723
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 560
BfuI GTATCC 1 cut(s) 1339
BisI GCNGC 4 cut(s) 83, 185, 1193, 1374
BlsI GCNGC 4 cut(s) 84, 186, 1194, 1375
Bme1390I CCNGG 3 cut(s) 246, 1231, 1280
Bme18I GGWCC 2 cut(s) 9, 1226
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 3 cut(s) 9, 1151, 1226
BmiI GGNNCC 1 cut(s) 1228
BmrFI CCNGG 3 cut(s) 246, 1231, 1280
BmsI GCATC 5 cut(s) 451, 871, 1175, 1210, 1252
BpiI GAAGAC 1 cut(s) 826
BpmI CTGGAG 2 cut(s) 780, 1078
Bpu10I CCTNAGC 1 cut(s) 790
BpuEI CTTGAG 1 cut(s) 272
BsaBI GATNNNNATC 2 cut(s) 489, 1350
BsaJI CCNNGG 6 cut(s) 244, 402, 495, 1154, 1229, 1251
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 266, 378, 407, 465, 993
Bse1I ACTGG 1 cut(s) 701
Bse21I CCTNAGG 2 cut(s) 72, 519
Bse8I GATNNNNATC 2 cut(s) 489, 1350
BseBI CCWGG 3 cut(s) 246, 1231, 1280
BseDI CCNNGG 6 cut(s) 244, 402, 495, 1154, 1229, 1251
BseGI GGATG 3 cut(s) 1225, 1267, 1318
BseJI GATNNNNATC 2 cut(s) 489, 1350
BseLI CCNNNNNNNGG 6 cut(s) 170, 266, 378, 407, 465, 993
BseMII CTCAG 8 cut(s) 63, 141, 227, 522, 537, 804, 883, 1347
BseNI ACTGG 1 cut(s) 701
BsePI GCGCGC 1 cut(s) 150
BseXI GCAGC 3 cut(s) 94, 196, 1360
BseYI CCCAGC 1 cut(s) 992
Bsh1236I CGCG 4 cut(s) 7, 80, 150, 152
BshFI GGCC 3 cut(s) 249, 1152, 1185
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 494
BslFI GGGAC 4 cut(s) 370, 490, 549, 1009
BslI CCNNNNNNNGG 6 cut(s) 170, 266, 378, 407, 465, 993
BsmFI GGGAC 4 cut(s) 370, 490, 549, 1009
BsnI GGCC 3 cut(s) 249, 1152, 1185
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 4 cut(s) 132, 276, 901, 1351
BspACI CCGC 7 cut(s) 7, 28, 85, 148, 217, 1193, 1265
BspANI GGCC 3 cut(s) 249, 1152, 1185
BspCNI CTCAG 8 cut(s) 64, 140, 226, 523, 538, 803, 882, 1346
BspFNI CGCG 4 cut(s) 7, 80, 150, 152
BspLI GGNNCC 1 cut(s) 1228
BspMAI CTGCAG 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 3 cut(s) 127, 909, 1359
BspTI CTTAAG 1 cut(s) 179
BsrI ACTGG 1 cut(s) 701
BssECI CCNNGG 6 cut(s) 244, 402, 495, 1154, 1229, 1251
BssHII GCGCGC 1 cut(s) 150
BssMI GATC 4 cut(s) 132, 276, 901, 1351
BssT1I CCWWGG 3 cut(s) 402, 1154, 1251
Bst2UI CCWGG 3 cut(s) 246, 1231, 1280
Bst4CI ACNGT 2 cut(s) 173, 848
Bst6I CTCTTC 5 cut(s) 83, 239, 621, 1129, 1302
BstAFI CTTAAG 1 cut(s) 179
BstAPI GCANNNNNTGC 2 cut(s) 722, 1247
BstC8I GCNNGC 2 cut(s) 152, 1100
BstF5I GGATG 3 cut(s) 1225, 1267, 1318
BstFNI CGCG 4 cut(s) 7, 80, 150, 152
BstHHI GCGC 5 cut(s) 7, 82, 152, 154, 569
BstKTI GATC 4 cut(s) 135, 279, 904, 1354
BstMBI GATC 4 cut(s) 132, 276, 901, 1351
BstMWI GCNNNNNNNGC 4 cut(s) 91, 151, 722, 1247
BstNI CCWGG 3 cut(s) 246, 1231, 1280
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 3 cut(s) 244, 1229, 1278
BstSFI CTRYAG 1 cut(s) 723
BstUI CGCG 4 cut(s) 7, 80, 150, 152
BstV1I GCAGC 3 cut(s) 94, 196, 1360
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 2 cut(s) 132, 1351
BstYI RGATCY 2 cut(s) 132, 1351
Bsu36I CCTNAGG 2 cut(s) 72, 519
BsuI GTATCC 1 cut(s) 1339
BsuRI GGCC 3 cut(s) 249, 1152, 1185
BtsCI GGATG 3 cut(s) 1225, 1267, 1318
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 152, 1100
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 5 cut(s) 7, 82, 152, 154, 569
Cfr13I GGNCC 3 cut(s) 9, 1151, 1226
Csp6I GTAC 1 cut(s) 1112
CviAII CATG 4 cut(s) 188, 421, 1028, 1099
CviQI GTAC 1 cut(s) 1112
DpnI GATC 4 cut(s) 134, 278, 903, 1353
DpnII GATC 4 cut(s) 132, 276, 901, 1351
EaeI YGGCCR 1 cut(s) 1183
Eam1104I CTCTTC 5 cut(s) 83, 239, 621, 1129, 1302
EarI CTCTTC 5 cut(s) 83, 239, 621, 1129, 1302
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 3 cut(s) 402, 1154, 1251
Eco24I GRGCYC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 9, 1226
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 2 cut(s) 72, 519
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 1226
EcoRII CCWGG 3 cut(s) 244, 1229, 1278
EcoT14I CCWWGG 3 cut(s) 402, 1154, 1251
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 3 cut(s) 402, 1154, 1251
FaeI CATG 4 cut(s) 191, 424, 1031, 1102
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 492, 524, 1101, 1133
FaqI GGGAC 4 cut(s) 370, 490, 549, 1009
FatI CATG 4 cut(s) 187, 420, 1027, 1098
FauI CCCGC 2 cut(s) 155, 1258
FauNDI CATATG 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 83, 185, 1193, 1374
FokI GGATG 3 cut(s) 1232, 1274, 1325
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 4 cut(s) 83, 185, 1193, 1374
GlaI GCGC 5 cut(s) 6, 81, 151, 153, 568
GluI GCNGC 4 cut(s) 83, 185, 1193, 1374
GsaI CCCAGC 1 cut(s) 996
GsuI CTGGAG 2 cut(s) 780, 1078
HaeIII GGCC 3 cut(s) 249, 1152, 1185
HhaI GCGC 5 cut(s) 7, 82, 152, 154, 569
Hin1II CATG 4 cut(s) 191, 424, 1031, 1102
Hin6I GCGC 5 cut(s) 5, 80, 150, 152, 567
HinP1I GCGC 5 cut(s) 5, 80, 150, 152, 567
HindIII AAGCTT 1 cut(s) 750
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188I TCNGA 8 cut(s) 130, 342, 387, 460, 547, 667, 955, 1336
Hpy188III TCNNGA 2 cut(s) 494, 759
Hpy8I GTNNAC 1 cut(s) 1090
HpyAV CCTTC 7 cut(s) 41, 118, 174, 250, 685, 791, 1210
HpyCH4III ACNGT 2 cut(s) 173, 848
HpyCH4IV ACGT 1 cut(s) 1162
HpyCH4V TGCA 7 cut(s) 140, 394, 725, 884, 1102, 1166, 1223
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 151, 722, 1247
HpySE526I ACGT 1 cut(s) 1162
Hsp92II CATG 4 cut(s) 191, 424, 1031, 1102
HspAI GCGC 5 cut(s) 5, 80, 150, 152, 567
Kzo9I GATC 4 cut(s) 132, 276, 901, 1351
LmnI GCTCC 1 cut(s) 914
Lsp1109I GCAGC 3 cut(s) 94, 196, 1360
LweI GCATC 5 cut(s) 451, 871, 1175, 1210, 1252
MaeII ACGT 1 cut(s) 1162
MaeIII GTNAC 1 cut(s) 975
MalI GATC 4 cut(s) 134, 278, 903, 1353
MboI GATC 4 cut(s) 132, 276, 901, 1351
MflI RGATCY 2 cut(s) 132, 1351
MhlI GDGCHC 1 cut(s) 919
MlsI TGGCCA 1 cut(s) 1185
MluCI AATT 5 cut(s) 326, 524, 658, 683, 734
MluNI TGGCCA 1 cut(s) 1185
MlyI GAGTC 4 cut(s) 352, 983, 1007, 1085
MmeI TCCRAC 2 cut(s) 138, 796
Mox20I TGGCCA 1 cut(s) 1185
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 1185
MseI TTAA 3 cut(s) 180, 686, 1065
MslI CAYNNNNRTG 2 cut(s) 39, 849
Msp20I TGGCCA 1 cut(s) 1185
MspA1I CMGCKG 3 cut(s) 85, 217, 794
MspCI CTTAAG 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 246, 1231, 1280
MvaI CCWGG 3 cut(s) 246, 1231, 1280
MvnI CGCG 4 cut(s) 7, 80, 150, 152
MwoI GCNNNNNNNGC 4 cut(s) 91, 151, 722, 1247
NdeI CATATG 1 cut(s) 619
NdeII GATC 4 cut(s) 132, 276, 901, 1351
NlaIII CATG 4 cut(s) 191, 424, 1031, 1102
NlaIV GGNNCC 1 cut(s) 1228
NmuCI GTSAC 1 cut(s) 975
NspI RCATGY 1 cut(s) 1102
OliI CACNNNNGTG 1 cut(s) 849
PaeI GCATGC 1 cut(s) 1102
PauI GCGCGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 7 cut(s) 490, 767, 827, 941, 1178, 1205, 1337
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 4 cut(s) 84, 186, 1194, 1375
PleI GAGTC 4 cut(s) 352, 982, 1007, 1085
PpsI GAGTC 4 cut(s) 352, 982, 1007, 1085
PpuMI RGGWCCY 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 1226
Psp6I CCWGG 3 cut(s) 244, 1229, 1278
PspFI CCCAGC 1 cut(s) 992
PspGI CCWGG 3 cut(s) 244, 1229, 1278
PspN4I GGNNCC 1 cut(s) 1228
PspPI GGNCC 3 cut(s) 9, 1151, 1226
PspPPI RGGWCCY 1 cut(s) 1226
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 132, 1351
PsyI GACNNNGTC 1 cut(s) 13
PteI GCGCGC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 1 cut(s) 1113
RsaNI GTAC 1 cut(s) 1112
RseI CAYNNNNRTG 2 cut(s) 39, 849
SacI GAGCTC 1 cut(s) 919
SaqAI TTAA 3 cut(s) 180, 686, 1065
SatI GCNGC 4 cut(s) 83, 185, 1193, 1374
Sau3AI GATC 4 cut(s) 132, 276, 901, 1351
Sau96I GGNCC 3 cut(s) 9, 1151, 1226
SchI GAGTC 4 cut(s) 352, 983, 1007, 1085
ScrFI CCNGG 3 cut(s) 246, 1231, 1280
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 5 cut(s) 451, 871, 1175, 1210, 1252
SfcI CTRYAG 1 cut(s) 723
SinI GGWCC 2 cut(s) 9, 1226
SmiMI CAYNNNNRTG 2 cut(s) 39, 849
SmlI CTYRAG 2 cut(s) 179, 287
SmoI CTYRAG 2 cut(s) 179, 287
SphI GCATGC 1 cut(s) 1102
Sse9I AATT 5 cut(s) 326, 524, 658, 683, 734
SsiI CCGC 7 cut(s) 7, 28, 85, 148, 217, 1193, 1265
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 3 cut(s) 244, 1229, 1278
StyI CCWWGG 3 cut(s) 402, 1154, 1251
TaaI ACNGT 2 cut(s) 173, 848
TaiI ACGT 1 cut(s) 1165
TaqI TCGA 4 cut(s) 20, 438, 552, 706
TasI AATT 5 cut(s) 326, 524, 658, 683, 734
TatI WGTACW 1 cut(s) 1111
TauI GCSGC 1 cut(s) 1195
TfiI GAWTC 7 cut(s) 490, 767, 827, 941, 1178, 1205, 1337
Tru1I TTAA 3 cut(s) 180, 686, 1065
Tru9I TTAA 3 cut(s) 180, 686, 1065
TseFI GTSAC 1 cut(s) 975
TseI GCWGC 3 cut(s) 82, 184, 1373
Tsp45I GTSAC 1 cut(s) 975
TspGWI ACGGA 1 cut(s) 1364
Tth111I GACNNNGTC 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 9, 1226
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 1102
XmnI GAANNNNTTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.