Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Forward (+)

29640837 .. 29642490

Gene Structure 1654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACGAAGAGGATCCAAACCCAACGCCTTCTCCAACAACCTACTCTCAGAGACATTCTCAAGAAATCTGAGCGAAAGAACAGGTTCCTCTTCTCCTTCCCTGGCCTCTTTGCCCCCATCGGAGGCGGTAAGATCGGTGAGCTCAAGGATTTGGGCACCAAGAACTCCGTCTTATACCTCGATTTCCCTCTGATCGTATTTTCCGATGCTTGGTGGATTGGGACACAAGCTGAGAACCGTGAAGAAGCCCAACTTGATTTCCCTAAGGAACTTACTGAGGGACAACACACAGAATATGACTTTAAAGGTGGTGCAGAACGTTCCCCAAATGTTAAGGTTGAAGATAATGTATCAGATGATGGAAACAAAGATTTGATGAGAGCAACACCTGTTCGACTTTCAGCAAGAACTGCCGGAAAACGGTTCTATTGGTACAGTTTTGGAAATGCTTCTTCTGGAGATGATTCTTTTGGAAGCGATACTTACTTAAGTGAAGGAGAAGATGAAAACATTGGGAGACTTGATTCATCATCCGGGCAAGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.4

Weight (kDa)

5.17

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	1 cut(s)	126
AclI	AACGTT	1 cut(s)	319
AclWI	GGATC	2 cut(s)	7, 20
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	122, 210, 420
AflII	CTTAAG	1 cut(s)	487
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	142, 230
AluI	AGCT	2 cut(s)	142, 230
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	45, 511
AlwI	GGATC	2 cut(s)	7, 20
AoxI	GGCC	1 cut(s)	103
Asp700I	GAANNNNTTC	2 cut(s)	83, 448
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	2 cut(s)	125, 353
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	45, 511
BfaI	CTAG	1 cut(s)	547
BfrI	CTTAAG	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	102, 535
BmiI	GGNNCC	3 cut(s)	14, 86, 157
BmrFI	CCNGG	2 cut(s)	102, 535
BmsI	GCATC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	44, 128
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 210, 420
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	3 cut(s)	122, 210, 420
BseMII	CTCAG	4 cut(s)	60, 61, 222, 267
BseSI	GKGCMC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	414, 534
BslFI	GGGAC	2 cut(s)	235, 294
BslI	CCNNNNNNNGG	3 cut(s)	122, 210, 420
BsmAI	GTCTC	2 cut(s)	45, 511
BsmFI	GGGAC	2 cut(s)	235, 294
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	144, 158
Bsp143I	GATC	3 cut(s)	12, 132, 192
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	4 cut(s)	60, 61, 223, 268
BspLI	GGNNCC	3 cut(s)	14, 86, 157
BspPI	GGATC	2 cut(s)	7, 20
BspT107I	GGYRCC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	12, 132, 192
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	239, 423, 437
Bst6I	CTCTTC	2 cut(s)	2, 95
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	540, 544
BstDEI	CTNAG	5 cut(s)	47, 69, 231, 264, 276
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	3 cut(s)	15, 135, 195
BstMAI	GTCTC	2 cut(s)	45, 511
BstMBI	GATC	3 cut(s)	12, 132, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	100, 533
BstSLI	GKGCMC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	540, 544
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	1 cut(s)	543
CviJI	RGCY	4 cut(s)	105, 142, 230, 248
CviKI_1	RGCY	4 cut(s)	105, 142, 230, 248
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	47, 69, 231, 264, 276
DpnI	GATC	3 cut(s)	14, 134, 194
DpnII	GATC	3 cut(s)	12, 132, 192
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	2, 95
EarI	CTCTTC	2 cut(s)	2, 95
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	546
FaiI	YATR	3 cut(s)	175, 297, 544
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 466, 498
FaqI	GGGAC	2 cut(s)	235, 294
FatI	CATG	1 cut(s)	542
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	414, 534
Hin1II	CATG	1 cut(s)	546
HinfI	GANTC	2 cut(s)	464, 524
HpaII	CCGG	2 cut(s)	414, 534
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	6 cut(s)	50, 70, 122, 192, 205, 355
Hpy188III	TCNNGA	2 cut(s)	61, 456
HpyAV	CCTTC	3 cut(s)	38, 106, 488
HpyCH4III	ACNGT	3 cut(s)	239, 423, 437
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	5 cut(s)	47, 69, 231, 264, 276
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	12, 132, 192
LpnPI	CCDG	6 cut(s)	67, 87, 114, 402, 427, 441
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	547
MaeII	ACGT	1 cut(s)	319
MalI	GATC	3 cut(s)	14, 134, 194
MboI	GATC	3 cut(s)	12, 132, 192
MboII	GAAGA	6 cut(s)	19, 82, 254, 353, 444, 512
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	144, 158
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	3, 98, 116, 116, 188, 198, 271
MroXI	GAANNNNTTC	2 cut(s)	83, 448
MseI	TTAA	3 cut(s)	303, 333, 488
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	2 cut(s)	414, 534
MspR9I	CCNGG	2 cut(s)	102, 535
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	3 cut(s)	12, 132, 192
NlaIII	CATG	1 cut(s)	546
NlaIV	GGNNCC	3 cut(s)	14, 86, 157
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	2 cut(s)	83, 448
PfeI	GAWTC	2 cut(s)	464, 524
Psp124BI	GAGCTC	1 cut(s)	144
Psp1406I	AACGTT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	14, 86, 157
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	303, 333, 488
Sau3AI	GATC	3 cut(s)	12, 132, 192
ScrFI	CCNGG	2 cut(s)	102, 535
SduI	GDGCHC	2 cut(s)	144, 158
SetI	ASST	9 cut(s)	43, 86, 144, 180, 232, 310, 322, 339, 391
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	3 cut(s)	59, 143, 487
SmoI	CTYRAG	3 cut(s)	59, 143, 487
SphI	GCATGC	1 cut(s)	546
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	547
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	100, 533
TaaI	ACNGT	3 cut(s)	239, 423, 437
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	180, 394
TfiI	GAWTC	2 cut(s)	464, 524
Tru1I	TTAA	3 cut(s)	303, 333, 488
Tru9I	TTAA	3 cut(s)	303, 333, 488
TspDTI	ATGAA	2 cut(s)	516, 519
TspGWI	ACGGA	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	487
XceI	RCATGY	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	83, 448
XspI	CTAG	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.