RchiOBHm_Chr7g0177071

DNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
188023 .. 194305
6283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15772

Sequence Viewer

Length: 1380 bp
ATGGCGCGAGGGTCGAAGCACAAAAAGGAAGAAGAAGACGAAGAAGATCCAGAGCGGAAGAGGCTGAAATCGCTGGGGTTTTCGAACAAGTTAGTATCGGAGATCCCAGCCAGGCCTCAAGCGCCTCTCCGGCCTTCAAACGCCGTCGTTAAGCACCACGGCAAAGACATCATCAAGAAATCTCAGCGCAAGAACAGGTTCCTCTTCTCCTTCCCCGGCCTCTTTGCTCCCATCGCTGGCGGTAAGATCGGCGACCTCCAGGATTTGGGCACCAAGACCCCTCTCCTCTACCTCGATTTCCCTCAGGGTCGGATCAAGTTGTTTGGGACCATTGTGTTCCCCAAGAACAAGTATTTGACTCTTCAGTTTCCTAGAGGTGGAAAGAGTGTCATGTGTGAGGACTACTTCGATAATATGATTGTATTTTCTGATGCTTGGTGGATTGGGACAAAGGACGAGAACCCAGACGAAACCCAACTTGATTTCCCTAAAGAACTGAATAAGGGACACAACACAGATTATGAATTTAAAGGTGGTGCAGGTTCAGCATCTGTGGTTAACAACCAAAGTGATTATAAAAATGAAATTACATATGTAGACGAACATTCTCCAGATACTAAGCTTGAGCATAATTTATCTGATGATGGAAACAAAGATTTGATTGAAGTAACACCAGTTCGTCATTCAGCAAGAACTGCTGGAAAACGATTCAATTTTGGAGAAGCTTCTTCTGGAGATGATTCTGTTGAAAGCAATACTGACTTATGTGAAGGAGAAGATAACCAAATTGGGGGACTCGATTCATTATCCAGGAAGCATGCTAGTGGAAATATCCTTTTCTTCTGTCTAAATCCCACTGAAAATCTCAGCATTGGAGATTTCAACATTGTTAATGAGGATGCTGTGAAAGGAGCTCAAATTCCTGAACAAAATCAGGAGTCCTCTATGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTTCAGTGACTATACCTAAGGAGGACTCTTGTAGTAATCATGGTCCTCTCGTTCAGACTACTATATCTACCTTATTCAAGAAAGTGGAGAAGAAGAAAGTGGGATCCAGTTTGCCAAGTCAAGTACAAACTCCTTCTCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCCAAAAGTTTCTGGCCAGAAGTTGCTGCAAGCTCCTTCAAAGAGGAAGTTTAATCAGGATGGAAGACCTAGTAAAAAGGGCAAAAGTATCAAGGAAAACGATGCTGTGGGCAAAAGGTTGGCAAAGAAGAAAGAATACGAGGTTGAAGATGATATTGAAGAATTCTCAAGTAGCTCACAGGATACTGATTGTAGTGATGAAGAGTGGGCTGCTTGA

Protein Analysis

459

Amino Acids

50.96

Weight (kDa)

6.85

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 269
AccB7I CCANNNNNTGG 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 55, 240
AclWI GGATC 5 cut(s) 41, 97, 320, 1083, 1096
AcoI YGGCCR 1 cut(s) 1177
AcsI RAATTY 3 cut(s) 524, 918, 1325
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 1 cut(s) 1110
AfiI CCNNNNNNNGG 4 cut(s) 236, 265, 377, 790
AgsI TTSAA 9 cut(s) 138, 665, 712, 749, 883, 1063, 1203, 1310, 1322
AjnI CCWGG 3 cut(s) 110, 258, 809
AluBI AGCT 5 cut(s) 622, 725, 914, 1196, 1338
AluI AGCT 5 cut(s) 622, 725, 914, 1196, 1338
Alw21I GWGCWC 1 cut(s) 916
AlwI GGATC 5 cut(s) 41, 97, 320, 1083, 1096
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 4 cut(s) 113, 131, 217, 1177
ApeKI GCWGC 2 cut(s) 1189, 1373
ApoI RAATTY 3 cut(s) 524, 918, 1325
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 7, 124, 189
AspS9I GGNCC 2 cut(s) 327, 1028
AsuC2I CCSGG 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 327, 1028
AxyI CCTNAGG 2 cut(s) 303, 1002
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 1179
BamHI GGATCC 1 cut(s) 1088
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 916
BarI GAAGNNNNNNTAC 2 cut(s) 1283, 1315
BbsI GAAGAC 2 cut(s) 42, 1234
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 2 cut(s) 1176, 1360
BccI CCATC 3 cut(s) 239, 638, 1217
BceAI ACGGC 2 cut(s) 128, 175
BciT130I CCWGG 3 cut(s) 112, 260, 811
BciVI GTATCC 1 cut(s) 1339
BcnI CCSGG 1 cut(s) 216
BfaI CTAG 3 cut(s) 372, 822, 1233
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 1339
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 2 cut(s) 1190, 1374
BlsI GCNGC 2 cut(s) 1191, 1375
Bme1390I CCNGG 4 cut(s) 112, 216, 260, 811
Bme18I GGWCC 2 cut(s) 327, 1028
BmgT120I GGNCC 2 cut(s) 327, 1028
BmiI GGNNCC 4 cut(s) 200, 271, 328, 1090
BmrFI CCNGG 4 cut(s) 112, 216, 260, 811
BmsI GCATC 5 cut(s) 421, 557, 889, 1169, 1255
BpiI GAAGAC 2 cut(s) 42, 1234
BpmI CTGGAG 3 cut(s) 242, 594, 753
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 102, 644, 1315
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 157, 214, 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 265, 377, 790
Bse1I ACTGG 2 cut(s) 674, 1092
Bse21I CCTNAGG 2 cut(s) 303, 1002
BseBI CCWGG 3 cut(s) 112, 260, 811
BseDI CCNNGG 3 cut(s) 157, 214, 1148
BseGI GGATG 2 cut(s) 904, 1228
BseLI CCNNNNNNNGG 4 cut(s) 236, 265, 377, 790
BseMII CTCAG 4 cut(s) 197, 317, 880, 1136
BseNI ACTGG 2 cut(s) 674, 1092
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 1176, 1360
BseYI CCCAGC 2 cut(s) 73, 106
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 115, 133, 219, 1179
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 916
BsiSI CCGG 2 cut(s) 130, 216
BslFI GGGAC 4 cut(s) 340, 460, 519, 807
BslI CCNNNNNNNGG 4 cut(s) 236, 265, 377, 790
BsmFI GGGAC 4 cut(s) 340, 460, 519, 807
BsnI GGCC 4 cut(s) 115, 133, 219, 1179
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 272, 916
Bsp143I GATC 5 cut(s) 46, 102, 246, 312, 1088
BspACI CCGC 2 cut(s) 55, 240
BspANI GGCC 4 cut(s) 115, 133, 219, 1179
BspCNI CTCAG 4 cut(s) 196, 316, 879, 1135
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 200, 271, 328, 1090
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 5 cut(s) 41, 97, 320, 1083, 1096
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 674, 1092
BssECI CCNNGG 3 cut(s) 157, 214, 1148
BssMI GATC 5 cut(s) 46, 102, 246, 312, 1088
BssT1I CCWWGG 1 cut(s) 1148
Bst2UI CCWGG 3 cut(s) 112, 260, 811
Bst6I CTCTTC 4 cut(s) 53, 209, 366, 1359
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 238, 819, 1194
BstDEI CTNAG 6 cut(s) 183, 303, 618, 866, 1002, 1122
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 904, 1228
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 7, 124, 189
BstKTI GATC 5 cut(s) 49, 105, 249, 315, 1091
BstMBI GATC 5 cut(s) 46, 102, 246, 312, 1088
BstMWI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
BstNI CCWGG 3 cut(s) 112, 260, 811
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 4 cut(s) 110, 214, 258, 809
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 1176, 1360
BstV2I GAAGAC 2 cut(s) 42, 1234
BstX2I RGATCY 3 cut(s) 46, 102, 1088
BstYI RGATCY 3 cut(s) 46, 102, 1088
Bsu36I CCTNAGG 2 cut(s) 303, 1002
BsuI GTATCC 1 cut(s) 1339
BsuRI GGCC 4 cut(s) 115, 133, 219, 1179
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 904, 1228
BtsIMutI CAGTG 2 cut(s) 855, 996
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 238, 819, 1194
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 3 cut(s) 7, 124, 189
Cfr13I GGNCC 2 cut(s) 327, 1028
Csp6I GTAC 1 cut(s) 1109
CviAII CATG 3 cut(s) 391, 818, 1025
CviQI GTAC 1 cut(s) 1109
DdeI CTNAG 6 cut(s) 183, 303, 618, 866, 1002, 1122
DpnI GATC 5 cut(s) 48, 104, 248, 314, 1090
DpnII GATC 5 cut(s) 46, 102, 246, 312, 1088
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 1177
Eam1104I CTCTTC 4 cut(s) 53, 209, 366, 1359
EarI CTCTTC 4 cut(s) 53, 209, 366, 1359
Ecl136II GAGCTC 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 1148
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 327, 1028
Eco53kI GAGCTC 1 cut(s) 914
Eco57I CTGAAG 1 cut(s) 347
Eco81I CCTNAGG 2 cut(s) 303, 1002
EcoICRI GAGCTC 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 1325
EcoRII CCWGG 3 cut(s) 110, 258, 809
EcoT14I CCWWGG 1 cut(s) 1148
EcoT38I GRGCYC 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 1148
FaeI CATG 3 cut(s) 394, 821, 1028
FaqI GGGAC 4 cut(s) 340, 460, 519, 807
FatI CATG 3 cut(s) 390, 817, 1024
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 1190, 1374
FokI GGATG 2 cut(s) 911, 1235
FriOI GRGCYC 1 cut(s) 916
Fsp4HI GCNGC 2 cut(s) 1190, 1374
FspBI CTAG 3 cut(s) 372, 822, 1233
GlaI GCGC 3 cut(s) 6, 123, 188
GluI GCNGC 2 cut(s) 1190, 1374
GsaI CCCAGC 2 cut(s) 77, 110
GsuI CTGGAG 3 cut(s) 242, 594, 753
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 115, 133, 219, 1179
HapII CCGG 2 cut(s) 130, 216
HhaI GCGC 3 cut(s) 7, 124, 189
Hin1II CATG 3 cut(s) 394, 821, 1028
Hin6I GCGC 3 cut(s) 5, 122, 187
HinP1I GCGC 3 cut(s) 5, 122, 187
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 620, 723
HinfI GANTC 7 cut(s) 358, 708, 740, 795, 800, 938, 1010
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 130, 216
Hpy166II GTNNAC 2 cut(s) 559, 598
Hpy188I TCNGA 6 cut(s) 100, 312, 430, 640, 952, 1041
Hpy188III TCNNGA 8 cut(s) 50, 175, 611, 732, 923, 935, 1063, 1220
Hpy8I GTNNAC 2 cut(s) 559, 598
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 144, 220, 764, 1128, 1209
HpyCH4V TGCA 2 cut(s) 539, 1192
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
HpyF3I CTNAG 6 cut(s) 183, 303, 618, 866, 1002, 1122
Hsp92II CATG 3 cut(s) 394, 821, 1028
HspAI GCGC 3 cut(s) 5, 122, 187
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 5 cut(s) 46, 102, 246, 312, 1088
LmnI GCTCC 3 cut(s) 232, 911, 1201
Lsp1109I GCAGC 2 cut(s) 1176, 1360
LweI GCATC 5 cut(s) 421, 557, 889, 1169, 1255
MaeI CTAG 3 cut(s) 372, 822, 1233
MaeIII GTNAC 2 cut(s) 667, 991
MalI GATC 5 cut(s) 48, 104, 248, 314, 1090
MbiI CCGCTC 1 cut(s) 55
MboI GATC 5 cut(s) 46, 102, 246, 312, 1088
MflI RGATCY 3 cut(s) 46, 102, 1088
MhlI GDGCHC 2 cut(s) 272, 916
MlsI TGGCCA 1 cut(s) 1179
MluCI AATT 7 cut(s) 524, 585, 631, 712, 786, 918, 1325
MluNI TGGCCA 1 cut(s) 1179
MlyI GAGTC 4 cut(s) 352, 789, 947, 1004
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 1179
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 1179
MseI TTAA 5 cut(s) 150, 528, 558, 891, 1215
MslI CAYNNNNRTG 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 1179
MspI CCGG 2 cut(s) 130, 216
MspR9I CCNGG 4 cut(s) 112, 216, 260, 811
MvaI CCWGG 3 cut(s) 112, 260, 811
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 592
NdeII GATC 5 cut(s) 46, 102, 246, 312, 1088
NlaIII CATG 3 cut(s) 394, 821, 1028
NlaIV GGNNCC 4 cut(s) 200, 271, 328, 1090
NmuCI GTSAC 1 cut(s) 991
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 708, 740, 800
PflMI CCANNNNNTGG 1 cut(s) 265
PfoI TCCNGGA 2 cut(s) 258, 809
PkrI GCNGC 2 cut(s) 1191, 1375
PleI GAGTC 4 cut(s) 352, 789, 946, 1004
PpsI GAGTC 4 cut(s) 352, 789, 946, 1004
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 916
Psp6I CCWGG 3 cut(s) 110, 258, 809
PspFI CCCAGC 2 cut(s) 73, 106
PspGI CCWGG 3 cut(s) 110, 258, 809
PspN4I GGNNCC 4 cut(s) 200, 271, 328, 1090
PspPI GGNCC 2 cut(s) 327, 1028
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 3 cut(s) 46, 102, 1088
RsaI GTAC 1 cut(s) 1110
RsaNI GTAC 1 cut(s) 1109
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 916
SaqAI TTAA 5 cut(s) 150, 528, 558, 891, 1215
SatI GCNGC 2 cut(s) 1190, 1374
Sau3AI GATC 5 cut(s) 46, 102, 246, 312, 1088
Sau96I GGNCC 2 cut(s) 327, 1028
SchI GAGTC 4 cut(s) 352, 789, 947, 1004
ScrFI CCNGG 4 cut(s) 112, 216, 260, 811
SduI GDGCHC 2 cut(s) 272, 916
SfaNI GCATC 5 cut(s) 421, 557, 889, 1169, 1255
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 327, 1028
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 3 cut(s) 117, 623, 1330
SmoI CTYRAG 3 cut(s) 117, 623, 1330
SphI GCATGC 1 cut(s) 821
Sse9I AATT 7 cut(s) 524, 585, 631, 712, 786, 918, 1325
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 2 cut(s) 55, 240
SspMI CTAG 3 cut(s) 372, 822, 1233
SstI GAGCTC 1 cut(s) 916
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 4 cut(s) 110, 214, 258, 809
StyI CCWWGG 1 cut(s) 1148
TaqI TCGA 5 cut(s) 14, 83, 294, 408, 798
TasI AATT 7 cut(s) 524, 585, 631, 712, 786, 918, 1325
TatI WGTACW 1 cut(s) 1108
TfiI GAWTC 3 cut(s) 708, 740, 800
Tru1I TTAA 5 cut(s) 150, 528, 558, 891, 1215
Tru9I TTAA 5 cut(s) 150, 528, 558, 891, 1215
TscAI CASTG 2 cut(s) 862, 996
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 2 cut(s) 1189, 1373
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 537, 597, 792, 1377
TspRI CASTG 2 cut(s) 862, 996
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 327, 1028
XapI RAATTY 3 cut(s) 524, 918, 1325
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 3 cut(s) 372, 822, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.