DNA-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48380 AT1G48380 |
| fragaria_vesca | FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 |
| malus_domestica | MD14G1245900.v1.1 |
| prunus_persica | Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 |
| pyrus_communis | pycom14g20680 |
| rosa_chinensis | RchiOBHm_Chr7g0177071 |
| rosa_laevigata | RLG00000005559 |
| rosa_multiflora | Rmu_sc0005310.1_g000026 |
| rosa_roxburghii | Rroxscaffold_3G00276120 |
| rosa_rugosa | Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500 |
| rosa_samantha | Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000 |
| rosa_wichuraiana | Rw7G000240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 545, 1153 |
| AccB1I | GGYRCC | 1 cut(s) | 284 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 450 |
| AccII | CGCG | 1 cut(s) | 7 |
| AciI | CCGC | 1 cut(s) | 255 |
| AclWI | GGATC | 2 cut(s) | 41, 54 |
| AcoI | YGGCCR | 1 cut(s) | 1165 |
| AcsI | RAATTY | 2 cut(s) | 903, 1316 |
| AfaI | GTAC | 1 cut(s) | 1095 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 251, 363, 392, 450 |
| AflII | CTTAAG | 1 cut(s) | 772 |
| AgsI | TTSAA | 8 cut(s) | 561, 635, 721, 758, 1110, 1191, 1298, 1313 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 8 cut(s) | 271, 470, 855, 899, 941, 1099, 1269, 1329 |
| AluI | AGCT | 8 cut(s) | 271, 470, 855, 899, 941, 1099, 1269, 1329 |
| Alw21I | GWGCWC | 2 cut(s) | 273, 901 |
| Alw26I | GTCTC | 1 cut(s) | 855 |
| AlwI | GGATC | 2 cut(s) | 41, 54 |
| AoxI | GGCC | 2 cut(s) | 232, 1165 |
| ApeKI | GCWGC | 2 cut(s) | 67, 1364 |
| ApoI | RAATTY | 2 cut(s) | 903, 1316 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 212, 733 |
| AspA2I | CCTAGG | 1 cut(s) | 386 |
| AspLEI | GCGC | 3 cut(s) | 7, 33, 72 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuC2I | CCSGG | 1 cut(s) | 820 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 136, 278 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| AvrII | CCTAGG | 1 cut(s) | 386 |
| AxyI | CCTNAGG | 3 cut(s) | 318, 504, 1221 |
| BaeGI | GKGCMC | 1 cut(s) | 287 |
| BalI | TGGCCA | 1 cut(s) | 1167 |
| BamHI | GGATCC | 1 cut(s) | 46 |
| BanI | GGYRCC | 1 cut(s) | 284 |
| BanII | GRGCYC | 2 cut(s) | 273, 901 |
| BauI | CACGAG | 1 cut(s) | 134 |
| BbsI | GAAGAC | 1 cut(s) | 845 |
| Bbv12I | GWGCWC | 2 cut(s) | 273, 901 |
| BbvI | GCAGC | 2 cut(s) | 79, 1351 |
| BccI | CCATC | 2 cut(s) | 782, 1205 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BclI | TGATCA | 1 cut(s) | 432 |
| BcnI | CCSGG | 1 cut(s) | 820 |
| BcoDI | GTCTC | 1 cut(s) | 855 |
| BfaI | CTAG | 2 cut(s) | 387, 831 |
| BfmI | CTRYAG | 1 cut(s) | 606 |
| BfrI | CTTAAG | 1 cut(s) | 772 |
| BfuAI | ACCTGC | 2 cut(s) | 545, 1153 |
| BisI | GCNGC | 2 cut(s) | 68, 1365 |
| BlnI | CCTAGG | 1 cut(s) | 386 |
| BlsI | GCNGC | 2 cut(s) | 69, 1366 |
| Bme1390I | CCNGG | 2 cut(s) | 231, 820 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmiI | GGNNCC | 4 cut(s) | 48, 120, 215, 286 |
| BmrFI | CCNGG | 2 cut(s) | 231, 820 |
| BmsI | GCATC | 1 cut(s) | 1157 |
| BpiI | GAAGAC | 1 cut(s) | 845 |
| BpmI | CTGGAG | 1 cut(s) | 762 |
| BpuEI | CTTGAG | 3 cut(s) | 173, 257, 1306 |
| BpuMI | CCSGG | 1 cut(s) | 820 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 229, 386 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 251, 363, 392, 450 |
| Bse21I | CCTNAGG | 3 cut(s) | 318, 504, 1221 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 3 cut(s) | 172, 229, 386 |
| BseGI | GGATG | 5 cut(s) | 333, 815, 1148, 1216, 1309 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 251, 363, 392, 450 |
| BseMII | CTCAG | 6 cut(s) | 126, 212, 332, 462, 507, 865 |
| BseSI | GKGCMC | 1 cut(s) | 287 |
| BseXI | GCAGC | 2 cut(s) | 79, 1351 |
| BsgI | GTGCAG | 1 cut(s) | 573 |
| Bsh1236I | CGCG | 1 cut(s) | 7 |
| BshFI | GGCC | 2 cut(s) | 234, 1167 |
| BshNI | GGYRCC | 1 cut(s) | 284 |
| BsiHKAI | GWGCWC | 2 cut(s) | 273, 901 |
| BsiSI | CCGG | 1 cut(s) | 819 |
| BslFI | GGGAC | 6 cut(s) | 104, 355, 475, 534, 816, 1349 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 251, 363, 392, 450 |
| BsmAI | GTCTC | 1 cut(s) | 855 |
| BsmBI | CGTCTC | 1 cut(s) | 855 |
| BsmFI | GGGAC | 6 cut(s) | 104, 355, 475, 534, 816, 1349 |
| BsmI | GAATGC | 1 cut(s) | 961 |
| BsnI | GGCC | 2 cut(s) | 234, 1167 |
| Bsp1286I | GDGCHC | 3 cut(s) | 273, 287, 901 |
| Bsp143I | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| Bsp19I | CCATGG | 1 cut(s) | 172 |
| BspACI | CCGC | 1 cut(s) | 255 |
| BspANI | GGCC | 2 cut(s) | 234, 1167 |
| BspCNI | CTCAG | 6 cut(s) | 125, 211, 331, 463, 508, 864 |
| BspFNI | CGCG | 1 cut(s) | 7 |
| BspHI | TCATGA | 1 cut(s) | 1117 |
| BspLI | GGNNCC | 4 cut(s) | 48, 120, 215, 286 |
| BspMI | ACCTGC | 2 cut(s) | 545, 1153 |
| BspPI | GGATC | 2 cut(s) | 41, 54 |
| BspT107I | GGYRCC | 1 cut(s) | 284 |
| BspTI | CTTAAG | 1 cut(s) | 772 |
| BssECI | CCNNGG | 3 cut(s) | 172, 229, 386 |
| BssMI | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| BssSI | CACGAG | 1 cut(s) | 134 |
| BssT1I | CCWWGG | 2 cut(s) | 172, 386 |
| Bst2BI | CACGAG | 1 cut(s) | 134 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 4 cut(s) | 36, 224, 392, 1293 |
| BstAFI | CTTAAG | 1 cut(s) | 772 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 704 |
| BstC8I | GCNNGC | 1 cut(s) | 828 |
| BstDSI | CCRYGG | 1 cut(s) | 172 |
| BstF5I | GGATG | 5 cut(s) | 333, 815, 1148, 1216, 1309 |
| BstFNI | CGCG | 1 cut(s) | 7 |
| BstHHI | GCGC | 3 cut(s) | 7, 33, 72 |
| BstKTI | GATC | 4 cut(s) | 49, 264, 435, 1345 |
| BstMAI | GTCTC | 1 cut(s) | 855 |
| BstMBI | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 704 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstNSI | RCATGY | 1 cut(s) | 830 |
| BstSCI | CCNGG | 2 cut(s) | 229, 818 |
| BstSFI | CTRYAG | 1 cut(s) | 606 |
| BstSLI | GKGCMC | 1 cut(s) | 287 |
| BstUI | CGCG | 1 cut(s) | 7 |
| BstV1I | GCAGC | 2 cut(s) | 79, 1351 |
| BstV2I | GAAGAC | 1 cut(s) | 845 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| Bsu36I | CCTNAGG | 3 cut(s) | 318, 504, 1221 |
| BsuRI | GGCC | 2 cut(s) | 234, 1167 |
| BtgI | CCRYGG | 1 cut(s) | 172 |
| BtsCI | GGATG | 5 cut(s) | 333, 815, 1148, 1216, 1309 |
| BtsI | GCAGTG | 1 cut(s) | 981 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 981, 1338 |
| BveI | ACCTGC | 2 cut(s) | 545, 1153 |
| Cac8I | GCNNGC | 1 cut(s) | 828 |
| CciI | TCATGA | 1 cut(s) | 1117 |
| CfoI | GCGC | 3 cut(s) | 7, 33, 72 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| CseI | GACGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 1094 |
| CviAII | CATG | 4 cut(s) | 173, 406, 827, 1118 |
| CviQI | GTAC | 1 cut(s) | 1094 |
| DpnI | GATC | 4 cut(s) | 48, 263, 434, 1344 |
| DpnII | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| DraI | TTTAAA | 1 cut(s) | 544 |
| EaeI | YGGCCR | 1 cut(s) | 1165 |
| Eam1104I | CTCTTC | 4 cut(s) | 36, 224, 392, 1293 |
| EarI | CTCTTC | 4 cut(s) | 36, 224, 392, 1293 |
| Ecl136II | GAGCTC | 2 cut(s) | 271, 899 |
| Eco130I | CCWWGG | 2 cut(s) | 172, 386 |
| Eco24I | GRGCYC | 2 cut(s) | 273, 901 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco53kI | GAGCTC | 2 cut(s) | 271, 899 |
| Eco81I | CCTNAGG | 3 cut(s) | 318, 504, 1221 |
| EcoICRI | GAGCTC | 2 cut(s) | 271, 899 |
| EcoO109I | RGGNCCY | 1 cut(s) | 118 |
| EcoRI | GAATTC | 1 cut(s) | 1316 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoT14I | CCWWGG | 2 cut(s) | 172, 386 |
| EcoT38I | GRGCYC | 2 cut(s) | 273, 901 |
| ErhI | CCWWGG | 2 cut(s) | 172, 386 |
| Esp3I | CGTCTC | 1 cut(s) | 855 |
| FaeI | CATG | 4 cut(s) | 176, 409, 830, 1121 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 477, 509, 751, 783, 1083, 1115 |
| FaqI | GGGAC | 6 cut(s) | 104, 355, 475, 534, 816, 1349 |
| FatI | CATG | 4 cut(s) | 172, 405, 826, 1117 |
| FbaI | TGATCA | 1 cut(s) | 432 |
| Fnu4HI | GCNGC | 2 cut(s) | 68, 1365 |
| FokI | GGATG | 5 cut(s) | 340, 802, 1135, 1223, 1316 |
| FriOI | GRGCYC | 2 cut(s) | 273, 901 |
| Fsp4HI | GCNGC | 2 cut(s) | 68, 1365 |
| FspBI | CTAG | 2 cut(s) | 387, 831 |
| GlaI | GCGC | 3 cut(s) | 6, 32, 71 |
| GluI | GCNGC | 2 cut(s) | 68, 1365 |
| GsuI | CTGGAG | 1 cut(s) | 762 |
| HaeIII | GGCC | 2 cut(s) | 234, 1167 |
| HapII | CCGG | 1 cut(s) | 819 |
| HgaI | GACGC | 1 cut(s) | 73 |
| HhaI | GCGC | 3 cut(s) | 7, 33, 72 |
| Hin1II | CATG | 4 cut(s) | 176, 409, 830, 1121 |
| Hin6I | GCGC | 3 cut(s) | 5, 31, 70 |
| HinP1I | GCGC | 3 cut(s) | 5, 31, 70 |
| HincII | GTYRAC | 1 cut(s) | 868 |
| HindII | GTYRAC | 1 cut(s) | 868 |
| HindIII | AAGCTT | 1 cut(s) | 1267 |
| HinfI | GANTC | 9 cut(s) | 717, 749, 809, 884, 923, 995, 1073, 1187, 1253 |
| HpaII | CCGG | 1 cut(s) | 819 |
| HphI | GGTGA | 3 cut(s) | 73, 136, 278 |
| Hpy166II | GTNNAC | 2 cut(s) | 868, 1072 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 327, 372, 649, 937 |
| Hpy188III | TCNNGA | 6 cut(s) | 190, 741, 920, 1118, 1208, 1257 |
| Hpy8I | GTNNAC | 2 cut(s) | 868, 1072 |
| HpyAV | CCTTC | 5 cut(s) | 103, 235, 773, 1113, 1192 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 864 |
| HpyCH4V | TGCA | 7 cut(s) | 99, 379, 554, 569, 974, 1084, 1148 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 704 |
| HpySE526I | ACGT | 1 cut(s) | 864 |
| Hsp92II | CATG | 4 cut(s) | 176, 409, 830, 1121 |
| HspAI | GCGC | 3 cut(s) | 5, 31, 70 |
| Ksp22I | TGATCA | 1 cut(s) | 432 |
| Kzo9I | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| LmnI | GCTCC | 1 cut(s) | 896 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 1351 |
| LweI | GCATC | 1 cut(s) | 1157 |
| MaeI | CTAG | 2 cut(s) | 387, 831 |
| MaeII | ACGT | 1 cut(s) | 864 |
| MaeIII | GTNAC | 3 cut(s) | 61, 976, 1173 |
| MalI | GATC | 4 cut(s) | 48, 263, 434, 1344 |
| MboI | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MhlI | GDGCHC | 3 cut(s) | 273, 287, 901 |
| MlsI | TGGCCA | 1 cut(s) | 1167 |
| MluCI | AATT | 5 cut(s) | 332, 721, 795, 903, 1316 |
| MluNI | TGGCCA | 1 cut(s) | 1167 |
| MlyI | GAGTC | 3 cut(s) | 932, 989, 1067 |
| MmeI | TCCRAC | 1 cut(s) | 305 |
| Mox20I | TGGCCA | 1 cut(s) | 1167 |
| MroXI | GAANNNNTTC | 2 cut(s) | 212, 733 |
| MscI | TGGCCA | 1 cut(s) | 1167 |
| MseI | TTAA | 6 cut(s) | 165, 543, 627, 773, 1047, 1203 |
| MslI | CAYNNNNRTG | 1 cut(s) | 831 |
| Msp20I | TGGCCA | 1 cut(s) | 1167 |
| MspCI | CTTAAG | 1 cut(s) | 772 |
| MspI | CCGG | 1 cut(s) | 819 |
| MspR9I | CCNGG | 2 cut(s) | 231, 820 |
| Mva1269I | GAATGC | 1 cut(s) | 961 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MvnI | CGCG | 1 cut(s) | 7 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 704 |
| NciI | CCSGG | 1 cut(s) | 820 |
| NcoI | CCATGG | 1 cut(s) | 172 |
| NdeII | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| NlaIII | CATG | 4 cut(s) | 176, 409, 830, 1121 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 120, 215, 286 |
| NmuCI | GTSAC | 3 cut(s) | 61, 976, 1173 |
| NspI | RCATGY | 1 cut(s) | 830 |
| PaeI | GCATGC | 1 cut(s) | 830 |
| PagI | TCATGA | 1 cut(s) | 1117 |
| PctI | GAATGC | 1 cut(s) | 961 |
| PdmI | GAANNNNTTC | 2 cut(s) | 212, 733 |
| PfeI | GAWTC | 6 cut(s) | 717, 749, 809, 884, 1187, 1253 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 450 |
| PfoI | TCCNGGA | 1 cut(s) | 818 |
| PkrI | GCNGC | 2 cut(s) | 69, 1366 |
| PleI | GAGTC | 3 cut(s) | 931, 989, 1067 |
| PpsI | GAGTC | 3 cut(s) | 931, 989, 1067 |
| PpuMI | RGGWCCY | 1 cut(s) | 118 |
| Psp124BI | GAGCTC | 2 cut(s) | 273, 901 |
| Psp5II | RGGWCCY | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 120, 215, 286 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PspPPI | RGGWCCY | 1 cut(s) | 118 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| RsaI | GTAC | 1 cut(s) | 1095 |
| RsaNI | GTAC | 1 cut(s) | 1094 |
| RseI | CAYNNNNRTG | 1 cut(s) | 831 |
| SacI | GAGCTC | 2 cut(s) | 273, 901 |
| SaqAI | TTAA | 6 cut(s) | 165, 543, 627, 773, 1047, 1203 |
| SatI | GCNGC | 2 cut(s) | 68, 1365 |
| Sau3AI | GATC | 4 cut(s) | 46, 261, 432, 1342 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| SchI | GAGTC | 3 cut(s) | 932, 989, 1067 |
| ScrFI | CCNGG | 2 cut(s) | 231, 820 |
| SduI | GDGCHC | 3 cut(s) | 273, 287, 901 |
| SfaNI | GCATC | 1 cut(s) | 1157 |
| SfcI | CTRYAG | 1 cut(s) | 606 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 831 |
| SmlI | CTYRAG | 4 cut(s) | 188, 272, 772, 1321 |
| SmoI | CTYRAG | 4 cut(s) | 188, 272, 772, 1321 |
| SphI | GCATGC | 1 cut(s) | 830 |
| Sse9I | AATT | 5 cut(s) | 332, 721, 795, 903, 1316 |
| SsiI | CCGC | 1 cut(s) | 255 |
| SspMI | CTAG | 2 cut(s) | 387, 831 |
| SstI | GAGCTC | 2 cut(s) | 273, 901 |
| StyD4I | CCNGG | 2 cut(s) | 229, 818 |
| StyI | CCWWGG | 2 cut(s) | 172, 386 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaiI | ACGT | 1 cut(s) | 867 |
| TaqI | TCGA | 5 cut(s) | 20, 309, 423, 688, 1242 |
| TasI | AATT | 5 cut(s) | 332, 721, 795, 903, 1316 |
| TatI | WGTACW | 1 cut(s) | 1093 |
| TfiI | GAWTC | 6 cut(s) | 717, 749, 809, 884, 1187, 1253 |
| Tru1I | TTAA | 6 cut(s) | 165, 543, 627, 773, 1047, 1203 |
| Tru9I | TTAA | 6 cut(s) | 165, 543, 627, 773, 1047, 1203 |
| TscAI | CASTG | 3 cut(s) | 163, 981, 1345 |
| TseFI | GTSAC | 3 cut(s) | 61, 976, 1173 |
| TseI | GCWGC | 2 cut(s) | 67, 1364 |
| Tsp45I | GTSAC | 3 cut(s) | 61, 976, 1173 |
| TspDTI | ATGAA | 6 cut(s) | 344, 609, 686, 801, 1106, 1134 |
| TspRI | CASTG | 3 cut(s) | 163, 981, 1345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 450 |
| Vha464I | CTTAAG | 1 cut(s) | 772 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 2 cut(s) | 903, 1316 |
| XceI | RCATGY | 1 cut(s) | 830 |
| XmaJI | CCTAGG | 1 cut(s) | 386 |
| XmnI | GAANNNNTTC | 2 cut(s) | 212, 733 |
| XspI | CTAG | 2 cut(s) | 387, 831 |