Prupe.5G243800_v2.0.a1

DNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
18284899 .. 18290514
5616 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G243800.3

Sequence Viewer

Length: 1371 bp
ATGGCGCGAACCTCGTCATCGAAGAAGAAGCGCAAAGACGAAGAGGATCCAAACCCAGAGGTGACGCAGCGCAAGAGGCTCAAAGCCCTCGCCTTCTGCAACAACCTACTCTCAGAGGTCCCTGCTAAGACCCACGAGCCTCTCACCCCCTCAAACACTGTTGTTAAGCACCATGGCAAAGACATTCTCAAGAAATCTCAGCGAAAGAACAGGTTCCTCTTCTCCTTCCCTGGCCTCCTTGCCCCCATTGGAGGCGGTAAGATCGGTGAGCTCAAGGATTTGGGCACCAAGAACCCCGTGTTATACCTCGATTTCCCTCAGGGTCGGATGAAATTGTTTGGGACTATTGTGTTCCCCAAGAACAGGTATCTGACTATGCAGTTCCCTAGGGGTGGGAAGAGTGTCATGTGCGAGGACTACTTCGATAATATGATCATATTTTCCAATGCTTGGTGGATTGGGACACAAGCTGAGAACCCCGAAGAAGCCCAACTTGATTTCCCTAAGGAACTTACTGAGGGACAACACGCAGAATATGACTTTAAAGGTGGTGCAGGTTCAACATCTGCAAACAAGCAAAGTGATTGTAAAAATGAAACTACATCTGTAGAACATTCCCCAAATGTTAAGGTTGAAGATAATGTATCAGATTATGGAAACAAGGATTTGATGAAAGCAACACCTGTTCGACATTCAGCAAGAACTGCTGGAAAACGATTCAATTTTGGAAATGCTTCTTCTGGAGATGATTCTTTTGAAAGCGATACTTACTTAAGTGAAGGAGAAGATGGAAAAATTGGGGGACTTGATTCATCATCCGGGAAGCATGCTAGTGGGAAGACTGAAAATCTCAGCTTTGGAGACGTTGACATTGATAATGAGGATTCTGTGAAAGGAGCTCAAATTCCCAAACAAAATCAGGAGTCCTCTGTGTCAGAAGCTAAATCAAAGAAACAATCGCATTCTACCTTTGCAGTGACTACATCTGTGGAGGACTCTCATAGAAATCATAGTTCGCTTATTCAGGCTACTATATCTACATTGTTTAAGAAAGTGGAGAAAAAGAAAGTGGACTCCATTATGCAAAGTCAAGTACAGCTTCCTTCTTCAAAGGTTCATGAAACACCAAAAAATCCAAAGAAACCTGCATCCCCAAAAGTTTCTGGCCAGAAGTCACGCCAAACTGATTCAAAGAAGAAGGTTAATCAGGATGGACGACCTAAGGAAAAGGCAAAAACTATCGAGGAAAAGGATTCAGGAGGCAAAAGCTTGGCAAAGAAGAAACAAGATGAGGTTGAAGAGGATGATATTGAAGAATTCTCAAGTAGCTCACGGGACACTGATCTTAGTGATGAGGATTGGGCTGCTTGA

Protein Analysis

457

Amino Acids

50.39

Weight (kDa)

8.39

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 545, 1153
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 450
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 41, 54
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 2 cut(s) 903, 1316
AfaI GTAC 1 cut(s) 1095
AfiI CCNNNNNNNGG 4 cut(s) 251, 363, 392, 450
AflII CTTAAG 1 cut(s) 772
AgsI TTSAA 8 cut(s) 561, 635, 721, 758, 1110, 1191, 1298, 1313
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 8 cut(s) 271, 470, 855, 899, 941, 1099, 1269, 1329
AluI AGCT 8 cut(s) 271, 470, 855, 899, 941, 1099, 1269, 1329
Alw21I GWGCWC 2 cut(s) 273, 901
Alw26I GTCTC 1 cut(s) 855
AlwI GGATC 2 cut(s) 41, 54
AoxI GGCC 2 cut(s) 232, 1165
ApeKI GCWGC 2 cut(s) 67, 1364
ApoI RAATTY 2 cut(s) 903, 1316
Asp700I GAANNNNTTC 2 cut(s) 212, 733
AspA2I CCTAGG 1 cut(s) 386
AspLEI GCGC 3 cut(s) 7, 33, 72
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 3 cut(s) 73, 136, 278
AvaII GGWCC 1 cut(s) 118
AvrII CCTAGG 1 cut(s) 386
AxyI CCTNAGG 3 cut(s) 318, 504, 1221
BaeGI GKGCMC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 273, 901
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 2 cut(s) 273, 901
BbvI GCAGC 2 cut(s) 79, 1351
BccI CCATC 2 cut(s) 782, 1205
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 1 cut(s) 855
BfaI CTAG 2 cut(s) 387, 831
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 772
BfuAI ACCTGC 2 cut(s) 545, 1153
BisI GCNGC 2 cut(s) 68, 1365
BlnI CCTAGG 1 cut(s) 386
BlsI GCNGC 2 cut(s) 69, 1366
Bme1390I CCNGG 2 cut(s) 231, 820
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 4 cut(s) 48, 120, 215, 286
BmrFI CCNGG 2 cut(s) 231, 820
BmsI GCATC 1 cut(s) 1157
BpiI GAAGAC 1 cut(s) 845
BpmI CTGGAG 1 cut(s) 762
BpuEI CTTGAG 3 cut(s) 173, 257, 1306
BpuMI CCSGG 1 cut(s) 820
BsaJI CCNNGG 3 cut(s) 172, 229, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 363, 392, 450
Bse21I CCTNAGG 3 cut(s) 318, 504, 1221
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 172, 229, 386
BseGI GGATG 5 cut(s) 333, 815, 1148, 1216, 1309
BseLI CCNNNNNNNGG 4 cut(s) 251, 363, 392, 450
BseMII CTCAG 6 cut(s) 126, 212, 332, 462, 507, 865
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 2 cut(s) 79, 1351
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 234, 1167
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 2 cut(s) 273, 901
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 6 cut(s) 104, 355, 475, 534, 816, 1349
BslI CCNNNNNNNGG 4 cut(s) 251, 363, 392, 450
BsmAI GTCTC 1 cut(s) 855
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 6 cut(s) 104, 355, 475, 534, 816, 1349
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 2 cut(s) 234, 1167
Bsp1286I GDGCHC 3 cut(s) 273, 287, 901
Bsp143I GATC 4 cut(s) 46, 261, 432, 1342
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 234, 1167
BspCNI CTCAG 6 cut(s) 125, 211, 331, 463, 508, 864
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 4 cut(s) 48, 120, 215, 286
BspMI ACCTGC 2 cut(s) 545, 1153
BspPI GGATC 2 cut(s) 41, 54
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 772
BssECI CCNNGG 3 cut(s) 172, 229, 386
BssMI GATC 4 cut(s) 46, 261, 432, 1342
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 172, 386
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 4 cut(s) 36, 224, 392, 1293
BstAFI CTTAAG 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 704
BstC8I GCNNGC 1 cut(s) 828
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 5 cut(s) 333, 815, 1148, 1216, 1309
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 3 cut(s) 7, 33, 72
BstKTI GATC 4 cut(s) 49, 264, 435, 1345
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 4 cut(s) 46, 261, 432, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 76, 704
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 2 cut(s) 229, 818
BstSFI CTRYAG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 79, 1351
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 3 cut(s) 318, 504, 1221
BsuRI GGCC 2 cut(s) 234, 1167
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 5 cut(s) 333, 815, 1148, 1216, 1309
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 3 cut(s) 156, 981, 1338
BveI ACCTGC 2 cut(s) 545, 1153
Cac8I GCNNGC 1 cut(s) 828
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 3 cut(s) 7, 33, 72
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 1094
CviAII CATG 4 cut(s) 173, 406, 827, 1118
CviQI GTAC 1 cut(s) 1094
DpnI GATC 4 cut(s) 48, 263, 434, 1344
DpnII GATC 4 cut(s) 46, 261, 432, 1342
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 4 cut(s) 36, 224, 392, 1293
EarI CTCTTC 4 cut(s) 36, 224, 392, 1293
Ecl136II GAGCTC 2 cut(s) 271, 899
Eco130I CCWWGG 2 cut(s) 172, 386
Eco24I GRGCYC 2 cut(s) 273, 901
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 2 cut(s) 271, 899
Eco81I CCTNAGG 3 cut(s) 318, 504, 1221
EcoICRI GAGCTC 2 cut(s) 271, 899
EcoO109I RGGNCCY 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 1316
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 172, 386
EcoT38I GRGCYC 2 cut(s) 273, 901
ErhI CCWWGG 2 cut(s) 172, 386
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 4 cut(s) 176, 409, 830, 1121
FalI AAGNNNNNCTT 6 cut(s) 477, 509, 751, 783, 1083, 1115
FaqI GGGAC 6 cut(s) 104, 355, 475, 534, 816, 1349
FatI CATG 4 cut(s) 172, 405, 826, 1117
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 68, 1365
FokI GGATG 5 cut(s) 340, 802, 1135, 1223, 1316
FriOI GRGCYC 2 cut(s) 273, 901
Fsp4HI GCNGC 2 cut(s) 68, 1365
FspBI CTAG 2 cut(s) 387, 831
GlaI GCGC 3 cut(s) 6, 32, 71
GluI GCNGC 2 cut(s) 68, 1365
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 2 cut(s) 234, 1167
HapII CCGG 1 cut(s) 819
HgaI GACGC 1 cut(s) 73
HhaI GCGC 3 cut(s) 7, 33, 72
Hin1II CATG 4 cut(s) 176, 409, 830, 1121
Hin6I GCGC 3 cut(s) 5, 31, 70
HinP1I GCGC 3 cut(s) 5, 31, 70
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 1267
HinfI GANTC 9 cut(s) 717, 749, 809, 884, 923, 995, 1073, 1187, 1253
HpaII CCGG 1 cut(s) 819
HphI GGTGA 3 cut(s) 73, 136, 278
Hpy166II GTNNAC 2 cut(s) 868, 1072
Hpy188I TCNGA 5 cut(s) 115, 327, 372, 649, 937
Hpy188III TCNNGA 6 cut(s) 190, 741, 920, 1118, 1208, 1257
Hpy8I GTNNAC 2 cut(s) 868, 1072
HpyAV CCTTC 5 cut(s) 103, 235, 773, 1113, 1192
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 7 cut(s) 99, 379, 554, 569, 974, 1084, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 704
HpySE526I ACGT 1 cut(s) 864
Hsp92II CATG 4 cut(s) 176, 409, 830, 1121
HspAI GCGC 3 cut(s) 5, 31, 70
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 46, 261, 432, 1342
LmnI GCTCC 1 cut(s) 896
Lsp1109I GCAGC 2 cut(s) 79, 1351
LweI GCATC 1 cut(s) 1157
MaeI CTAG 2 cut(s) 387, 831
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 3 cut(s) 61, 976, 1173
MalI GATC 4 cut(s) 48, 263, 434, 1344
MboI GATC 4 cut(s) 46, 261, 432, 1342
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 273, 287, 901
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 5 cut(s) 332, 721, 795, 903, 1316
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 3 cut(s) 932, 989, 1067
MmeI TCCRAC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 1167
MroXI GAANNNNTTC 2 cut(s) 212, 733
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 6 cut(s) 165, 543, 627, 773, 1047, 1203
MslI CAYNNNNRTG 1 cut(s) 831
Msp20I TGGCCA 1 cut(s) 1167
MspCI CTTAAG 1 cut(s) 772
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 2 cut(s) 231, 820
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 76, 704
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 172
NdeII GATC 4 cut(s) 46, 261, 432, 1342
NlaIII CATG 4 cut(s) 176, 409, 830, 1121
NlaIV GGNNCC 4 cut(s) 48, 120, 215, 286
NmuCI GTSAC 3 cut(s) 61, 976, 1173
NspI RCATGY 1 cut(s) 830
PaeI GCATGC 1 cut(s) 830
PagI TCATGA 1 cut(s) 1117
PctI GAATGC 1 cut(s) 961
PdmI GAANNNNTTC 2 cut(s) 212, 733
PfeI GAWTC 6 cut(s) 717, 749, 809, 884, 1187, 1253
PflMI CCANNNNNTGG 1 cut(s) 450
PfoI TCCNGGA 1 cut(s) 818
PkrI GCNGC 2 cut(s) 69, 1366
PleI GAGTC 3 cut(s) 931, 989, 1067
PpsI GAGTC 3 cut(s) 931, 989, 1067
PpuMI RGGWCCY 1 cut(s) 118
Psp124BI GAGCTC 2 cut(s) 273, 901
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 4 cut(s) 48, 120, 215, 286
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 1095
RsaNI GTAC 1 cut(s) 1094
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 2 cut(s) 273, 901
SaqAI TTAA 6 cut(s) 165, 543, 627, 773, 1047, 1203
SatI GCNGC 2 cut(s) 68, 1365
Sau3AI GATC 4 cut(s) 46, 261, 432, 1342
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 3 cut(s) 932, 989, 1067
ScrFI CCNGG 2 cut(s) 231, 820
SduI GDGCHC 3 cut(s) 273, 287, 901
SfaNI GCATC 1 cut(s) 1157
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 4 cut(s) 188, 272, 772, 1321
SmoI CTYRAG 4 cut(s) 188, 272, 772, 1321
SphI GCATGC 1 cut(s) 830
Sse9I AATT 5 cut(s) 332, 721, 795, 903, 1316
SsiI CCGC 1 cut(s) 255
SspMI CTAG 2 cut(s) 387, 831
SstI GAGCTC 2 cut(s) 273, 901
StyD4I CCNGG 2 cut(s) 229, 818
StyI CCWWGG 2 cut(s) 172, 386
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 867
TaqI TCGA 5 cut(s) 20, 309, 423, 688, 1242
TasI AATT 5 cut(s) 332, 721, 795, 903, 1316
TatI WGTACW 1 cut(s) 1093
TfiI GAWTC 6 cut(s) 717, 749, 809, 884, 1187, 1253
Tru1I TTAA 6 cut(s) 165, 543, 627, 773, 1047, 1203
Tru9I TTAA 6 cut(s) 165, 543, 627, 773, 1047, 1203
TscAI CASTG 3 cut(s) 163, 981, 1345
TseFI GTSAC 3 cut(s) 61, 976, 1173
TseI GCWGC 2 cut(s) 67, 1364
Tsp45I GTSAC 3 cut(s) 61, 976, 1173
TspDTI ATGAA 6 cut(s) 344, 609, 686, 801, 1106, 1134
TspRI CASTG 3 cut(s) 163, 981, 1345
Van91I CCANNNNNTGG 1 cut(s) 450
Vha464I CTTAAG 1 cut(s) 772
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 2 cut(s) 903, 1316
XceI RCATGY 1 cut(s) 830
XmaJI CCTAGG 1 cut(s) 386
XmnI GAANNNNTTC 2 cut(s) 212, 733
XspI CTAG 2 cut(s) 387, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.