Rw7G000240

DNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
227938 .. 233491
5554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000240.1

Sequence Viewer

Length: 1371 bp
ATGGCGCGAGGGTCGAAGCACAGAAAGGAAGAAGAAGACGAAGAAGATCCAGAGCGGAAGAGGCTGAAATCGCTGGGGTTTTCGAACAAGTTAGTATCGGAGATCCCAGCCAGGCCTCAAGCGCCTCTCCGGCCTTCAAACGCCGTCGTTAAGCACCACGGCAAAGACATTATCAAGAAATCTCAGCGCAAGAACAGGTTCCTCTTCTCCTTCCCCGGCCTCTTTGCTCCCATCGCTGGCGGTAAGATCGGCGACCTCAAGGATTTGGGCACCAAGACCCCTCTCCTCTACCTCGATTTCCCTCAGGGTCGGATCAAGTTGTTTGGGACCATTGTGTTCCCCAAGAACAAGTATTTGACTCTTCAGTTTCCTAGAGGTGGAAAGAGTGTCATGTGTGAGGACTACTTCGATAATATGATTGTATTTTCTGATGCTTGGTGGATTGGGACAAAGGAAGAGAACCCAGAAGAAACCCAACTTGATTTCCCTAAAGAACTGAATAAGGGACACAACACAGATTATGAATTTAAAGGTGGTGCAGGTTCAGCATCTGTGGTTAACAACCAAAGTGATTATAAAAATGAAATTACATATGTAGACGAACATTCTCCAGATGCTAAGCTTGAACATAATTTATCTGATGATGGAAACAAGGATTTGATTGAAGTAACACCAGTTCGTCATTCAGCAAGAACTGCTGGAAAACGATTCAATTTTGGAGAAGCTTCTTCTGGAGATGATTCTGTTGAAAGCAATACTGACTTATGTGAAGGAGAAGATAACCAAATTGGGGGACTCAATTCATTATCCAGGAAGCATGCTAGTGGAAATATCCTTTTCTTTTCTACTGAAGATCTCAGCATTGGAGATTTCAACATTGTTAATGAGGATGCTGTGAAAGGAGCTCAAATTCCTGAACAAAATCAGGAGTCCTCTATGTCAGAGGCTAAATCAAAGAAACAATCTCATTCTGCCTTTTCAGTGACTATACCTAAGGAGGACTCTTGTAGTAATCATGGTCCTCTCGTTCAGACTACTATATCTACCTTATTCAAGAAAGTGGAGAAGAAGAAAGTGGGATCCAGTTTGCCGAGTCAAGTACAAACTCCTTCTCAGGCTCATAAAACACCAAGAAATCCAAGGAAACCAGCATCTCCAAAAGTTTCTGGCCAGAAGTTGCTGCAAGCTCCTTCAAAGAGGAAGTTTAATCAGGATGGAAGACCTAGTAAAAAGGGCAAAAGTATCAAGGAAAACGATGCTGTGGGCAAAAGGTTGGCAAAGAAGAAAGAATACGAGGTTGAAGATGATATTGAAGAATTCTCAAGTAGCTCACAGGATACTGATTGTAGTGATGAAGAATGGGCTGCTTGA

Protein Analysis

456

Amino Acids

50.65

Weight (kDa)

7.18

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 55, 240
AclWI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 3 cut(s) 524, 909, 1316
AcuI CTGAAG 2 cut(s) 347, 870
AfaI GTAC 1 cut(s) 1101
AfiI CCNNNNNNNGG 3 cut(s) 236, 377, 790
AjnI CCWGG 2 cut(s) 110, 809
AluBI AGCT 5 cut(s) 622, 725, 905, 1187, 1329
AluI AGCT 5 cut(s) 622, 725, 905, 1187, 1329
Alw21I GWGCWC 1 cut(s) 907
AlwI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 4 cut(s) 113, 131, 217, 1168
ApeKI GCWGC 2 cut(s) 1180, 1364
ApoI RAATTY 3 cut(s) 524, 909, 1316
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 7, 124, 189
AspS9I GGNCC 2 cut(s) 327, 1019
AsuC2I CCSGG 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 327, 1019
AxyI CCTNAGG 2 cut(s) 303, 993
BaeGI GKGCMC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 1170
BamHI GGATCC 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 907
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbsI GAAGAC 2 cut(s) 42, 1225
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 2 cut(s) 1167, 1351
BccI CCATC 3 cut(s) 239, 638, 1208
BceAI ACGGC 2 cut(s) 128, 175
BciT130I CCWGG 2 cut(s) 112, 811
BciVI GTATCC 1 cut(s) 1330
BcnI CCSGG 1 cut(s) 216
BfaI CTAG 3 cut(s) 372, 822, 1224
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 1330
BglI GCCNNNNNGGC 1 cut(s) 130
BglII AGATCT 1 cut(s) 853
BisI GCNGC 2 cut(s) 1181, 1365
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 2 cut(s) 1182, 1366
Bme1390I CCNGG 3 cut(s) 112, 216, 811
Bme18I GGWCC 2 cut(s) 327, 1019
BmgT120I GGNCC 2 cut(s) 327, 1019
BmiI GGNNCC 4 cut(s) 200, 271, 328, 1081
BmrFI CCNGG 3 cut(s) 112, 216, 811
BmsI GCATC 6 cut(s) 421, 557, 604, 880, 1160, 1246
BpiI GAAGAC 2 cut(s) 42, 1225
BpmI CTGGAG 2 cut(s) 594, 753
Bpu1102I GCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 102, 242, 1306
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 157, 214, 1139
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 377, 790
Bse1I ACTGG 2 cut(s) 674, 1083
Bse21I CCTNAGG 2 cut(s) 303, 993
BseBI CCWGG 2 cut(s) 112, 811
BseDI CCNNGG 3 cut(s) 157, 214, 1139
BseGI GGATG 2 cut(s) 895, 1219
BseLI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BseMII CTCAG 4 cut(s) 197, 317, 871, 1127
BseNI ACTGG 2 cut(s) 674, 1083
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 1167, 1351
BseYI CCCAGC 2 cut(s) 73, 106
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 115, 133, 219, 1170
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 2 cut(s) 130, 216
BslFI GGGAC 4 cut(s) 340, 460, 519, 807
BslI CCNNNNNNNGG 3 cut(s) 236, 377, 790
BsmFI GGGAC 4 cut(s) 340, 460, 519, 807
BsnI GGCC 4 cut(s) 115, 133, 219, 1170
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 272, 907
Bsp143I GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
Bsp1720I GCTNAGC 1 cut(s) 618
BspACI CCGC 2 cut(s) 55, 240
BspANI GGCC 4 cut(s) 115, 133, 219, 1170
BspCNI CTCAG 4 cut(s) 196, 316, 870, 1126
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 200, 271, 328, 1081
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 5 cut(s) 41, 97, 320, 1074, 1087
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 674, 1083
BssECI CCNNGG 3 cut(s) 157, 214, 1139
BssMI GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
BssT1I CCWWGG 1 cut(s) 1139
Bst2UI CCWGG 2 cut(s) 112, 811
Bst6I CTCTTC 4 cut(s) 53, 209, 366, 450
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 238, 819, 1185
BstDEI CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 895, 1219
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 7, 124, 189
BstKTI GATC 6 cut(s) 49, 105, 249, 315, 856, 1082
BstMBI GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
BstMWI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
BstNI CCWGG 2 cut(s) 112, 811
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 110, 214, 809
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 1167, 1351
BstV2I GAAGAC 2 cut(s) 42, 1225
BstX2I RGATCY 4 cut(s) 46, 102, 853, 1079
BstYI RGATCY 4 cut(s) 46, 102, 853, 1079
Bsu36I CCTNAGG 2 cut(s) 303, 993
BsuI GTATCC 1 cut(s) 1330
BsuRI GGCC 4 cut(s) 115, 133, 219, 1170
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 895, 1219
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 238, 819, 1185
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 3 cut(s) 7, 124, 189
Cfr13I GGNCC 2 cut(s) 327, 1019
Csp6I GTAC 1 cut(s) 1100
CviAII CATG 3 cut(s) 391, 818, 1016
CviQI GTAC 1 cut(s) 1100
DdeI CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
DpnI GATC 6 cut(s) 48, 104, 248, 314, 855, 1081
DpnII GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 4 cut(s) 53, 209, 366, 450
EarI CTCTTC 4 cut(s) 53, 209, 366, 450
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 1 cut(s) 1139
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 327, 1019
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 2 cut(s) 347, 870
Eco81I CCTNAGG 2 cut(s) 303, 993
EcoICRI GAGCTC 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 1316
EcoRII CCWGG 2 cut(s) 110, 809
EcoT14I CCWWGG 1 cut(s) 1139
EcoT38I GRGCYC 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 1139
FaeI CATG 3 cut(s) 394, 821, 1019
FaqI GGGAC 4 cut(s) 340, 460, 519, 807
FatI CATG 3 cut(s) 390, 817, 1015
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 1181, 1365
FokI GGATG 2 cut(s) 902, 1226
FriOI GRGCYC 1 cut(s) 907
Fsp4HI GCNGC 2 cut(s) 1181, 1365
FspBI CTAG 3 cut(s) 372, 822, 1224
GlaI GCGC 3 cut(s) 6, 123, 188
GluI GCNGC 2 cut(s) 1181, 1365
GsaI CCCAGC 2 cut(s) 77, 110
GsuI CTGGAG 2 cut(s) 594, 753
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 4 cut(s) 115, 133, 219, 1170
HapII CCGG 2 cut(s) 130, 216
HhaI GCGC 3 cut(s) 7, 124, 189
Hin1II CATG 3 cut(s) 394, 821, 1019
Hin6I GCGC 3 cut(s) 5, 122, 187
HinP1I GCGC 3 cut(s) 5, 122, 187
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 620, 723
HinfI GANTC 7 cut(s) 358, 708, 740, 795, 929, 1001, 1093
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 130, 216
Hpy166II GTNNAC 2 cut(s) 559, 598
Hpy188I TCNGA 6 cut(s) 100, 312, 430, 640, 943, 1032
Hpy188III TCNNGA 8 cut(s) 50, 175, 611, 732, 914, 926, 1054, 1211
Hpy8I GTNNAC 2 cut(s) 559, 598
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 144, 220, 764, 1119, 1200
HpyCH4V TGCA 2 cut(s) 539, 1183
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
HpyF3I CTNAG 6 cut(s) 183, 303, 618, 857, 993, 1113
Hsp92II CATG 3 cut(s) 394, 821, 1019
HspAI GCGC 3 cut(s) 5, 122, 187
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
LmnI GCTCC 3 cut(s) 232, 902, 1192
Lsp1109I GCAGC 2 cut(s) 1167, 1351
LweI GCATC 6 cut(s) 421, 557, 604, 880, 1160, 1246
MaeI CTAG 3 cut(s) 372, 822, 1224
MaeIII GTNAC 2 cut(s) 667, 982
MalI GATC 6 cut(s) 48, 104, 248, 314, 855, 1081
MbiI CCGCTC 1 cut(s) 55
MboI GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
MflI RGATCY 4 cut(s) 46, 102, 853, 1079
MhlI GDGCHC 2 cut(s) 272, 907
MlsI TGGCCA 1 cut(s) 1170
MluCI AATT 8 cut(s) 524, 585, 631, 712, 786, 799, 909, 1316
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 5 cut(s) 352, 789, 938, 995, 1102
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 5 cut(s) 150, 528, 558, 882, 1206
MslI CAYNNNNRTG 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 1170
MspI CCGG 2 cut(s) 130, 216
MspR9I CCNGG 3 cut(s) 112, 216, 811
MvaI CCWGG 2 cut(s) 112, 811
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 7 cut(s) 61, 70, 121, 130, 233, 545, 695
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
NlaIII CATG 3 cut(s) 394, 821, 1019
NlaIV GGNNCC 4 cut(s) 200, 271, 328, 1081
NmeAIII GCCGAG 1 cut(s) 1116
NmuCI GTSAC 1 cut(s) 982
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 708, 740
PfoI TCCNGGA 1 cut(s) 809
PkrI GCNGC 2 cut(s) 1182, 1366
PleI GAGTC 5 cut(s) 352, 789, 937, 995, 1101
PpsI GAGTC 5 cut(s) 352, 789, 937, 995, 1101
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 110, 809
PspFI CCCAGC 2 cut(s) 73, 106
PspGI CCWGG 2 cut(s) 110, 809
PspN4I GGNNCC 4 cut(s) 200, 271, 328, 1081
PspPI GGNCC 2 cut(s) 327, 1019
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 4 cut(s) 46, 102, 853, 1079
RsaI GTAC 1 cut(s) 1101
RsaNI GTAC 1 cut(s) 1100
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 907
SaqAI TTAA 5 cut(s) 150, 528, 558, 882, 1206
SatI GCNGC 2 cut(s) 1181, 1365
Sau3AI GATC 6 cut(s) 46, 102, 246, 312, 853, 1079
Sau96I GGNCC 2 cut(s) 327, 1019
SchI GAGTC 5 cut(s) 352, 789, 938, 995, 1102
ScrFI CCNGG 3 cut(s) 112, 216, 811
SduI GDGCHC 2 cut(s) 272, 907
SfaNI GCATC 6 cut(s) 421, 557, 604, 880, 1160, 1246
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 327, 1019
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 3 cut(s) 117, 257, 1321
SmoI CTYRAG 3 cut(s) 117, 257, 1321
SphI GCATGC 1 cut(s) 821
Sse9I AATT 8 cut(s) 524, 585, 631, 712, 786, 799, 909, 1316
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 2 cut(s) 55, 240
SspMI CTAG 3 cut(s) 372, 822, 1224
SstI GAGCTC 1 cut(s) 907
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 110, 214, 809
StyI CCWWGG 1 cut(s) 1139
TaqI TCGA 4 cut(s) 14, 83, 294, 408
TasI AATT 8 cut(s) 524, 585, 631, 712, 786, 799, 909, 1316
TatI WGTACW 1 cut(s) 1099
TfiI GAWTC 2 cut(s) 708, 740
Tru1I TTAA 5 cut(s) 150, 528, 558, 882, 1206
Tru9I TTAA 5 cut(s) 150, 528, 558, 882, 1206
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 2 cut(s) 1180, 1364
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 4 cut(s) 537, 597, 792, 1368
TspRI CASTG 1 cut(s) 987
VpaK11BI GGWCC 2 cut(s) 327, 1019
XapI RAATTY 3 cut(s) 524, 909, 1316
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 3 cut(s) 372, 822, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.