AT1G48620

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009974
Physical Location & Seq
Reverse (-)
17973642 .. 17976663
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48620.1

Sequence Viewer

Length: 1440 bp
ATGGATCCTTCTCTCTCTGCAACCAATGATCCTCATCATCCTCCTCCTCCTCAGTTCACATCTTTCCCTCCTTTCACCAACACCAACCCCTTCGCCTCTCCAAACCACCCCTTCTTCACCGGACCCACCGCCGTCGCGCCGCCAAACAACATCCATCTCTATCAAGCAGCTCCTCCGCAGCAGCCACAAACATCTCCAGTTCCTCCTCATCCATCTATTTCCCACCCTCCTTACTCTGACATGATTTGCACGGCGATTGCAGCGTTAAACGAACCAGATGGGTCAAGCAAGCAAGCTATTTCGAGGTACATAGAGAGAATTTACACTGGGATTCCTACTGCTCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGGGATTCTTGTCATGGTTAAGAAATCTTACAAGCTTGCTTCTACTCCTCCTCCTCCTCCTCCTACTAGTGTAGCTCCTAGTCTTGAACCTCCCAGATCTGATTTCATAGTCAACGAGAACCAACCTTTACCTGATCCGGTTTTGGCTTCTTCTACTCCTCAGACTATTAAACGTGGTCGTGGTCGACCTCCAAAAGCTAAACCAGATGTTGTTCAACCTCAACCTCTGACTAATGGAAAACTCACCTGGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGAGATACAGATACAGCCGCCACAGTTACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGGAACTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACGAAGAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAGTAGTCTCAGCTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGACCAAAGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTCCACCACCACCACCACCAACTAACGTAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTAAGATTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAAAACCCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATGGTGACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTGTAATTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATACAGGACCTGGAAGGGATAGCAGAGACAACAAACGAGCCAAAGCACATGGAAGAAGTGCAGCTGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAGGACAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTAA

Protein Analysis

479

Amino Acids

51.39

Weight (kDa)

9.8

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 75 - 136 9.7e-14 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 732
AccI GTMKAC 2 cut(s) 571, 820
AccII CGCG 1 cut(s) 137
AciI CCGC 6 cut(s) 129, 140, 176, 686, 728, 1139
AclWI GGATC 3 cut(s) 12, 23, 515
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 2 cut(s) 867, 1208
AcyI GRCGYC 1 cut(s) 919
AfaI GTAC 2 cut(s) 308, 1105
AfiI CCNNNNNNNGG 2 cut(s) 830, 1055
AgsI TTSAA 7 cut(s) 379, 473, 602, 1211, 1243, 1283, 1373
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 2 cut(s) 632, 1296
Alw26I GTCTC 6 cut(s) 661, 718, 794, 874, 922, 1307
AlwI GGATC 3 cut(s) 12, 23, 515
AlwNI CAGNNNCTG 1 cut(s) 1297
AoxI GGCC 1 cut(s) 1043
ApeKI GCWGC 9 cut(s) 167, 178, 181, 260, 712, 776, 839, 1348, 1351
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 122, 1294
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 5 cut(s) 67, 109, 622, 778, 1184
AvaII GGWCC 2 cut(s) 122, 1294
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 386, 1129
BbvI GCAGC 9 cut(s) 179, 190, 193, 272, 724, 763, 826, 1338, 1360
BccI CCATC 6 cut(s) 162, 220, 272, 372, 743, 1163
BceAI ACGGC 3 cut(s) 116, 267, 1058
BciT130I CCWGG 2 cut(s) 634, 1298
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 6 cut(s) 661, 718, 794, 874, 922, 1307
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 453, 465, 741
BfmI CTRYAG 1 cut(s) 861
BglII AGATCT 1 cut(s) 482
Bme1390I CCNGG 3 cut(s) 634, 732, 1298
Bme18I GGWCC 2 cut(s) 122, 1294
BmgT120I GGNCC 2 cut(s) 122, 1294
BmiI GGNNCC 2 cut(s) 6, 124
BmrFI CCNGG 3 cut(s) 634, 732, 1298
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 386, 1129
BpmI CTGGAG 2 cut(s) 180, 861
Bpu10I CCTNAGC 1 cut(s) 1221
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 919
BsaI GGTCTC 2 cut(s) 718, 922
BsaJI CCNNGG 2 cut(s) 633, 922
BsaWI WCCGGW 3 cut(s) 119, 523, 788
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 999, 1029
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 1055
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 4 cut(s) 197, 331, 384, 1111
Bse3DI GCAATG 1 cut(s) 1425
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 2 cut(s) 634, 1298
BseDI CCNNGG 2 cut(s) 633, 922
BseGI GGATG 3 cut(s) 37, 150, 208
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 830, 1055
BseMI GCAATG 1 cut(s) 1425
BseMII CTCAG 3 cut(s) 65, 560, 885
BseNI ACTGG 4 cut(s) 197, 331, 384, 1111
BseXI GCAGC 9 cut(s) 179, 190, 193, 272, 724, 763, 826, 1338, 1360
BseYI CCCAGC 1 cut(s) 842
BsgI GTGCAG 1 cut(s) 1367
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 1045
BsiSI CCGG 5 cut(s) 120, 524, 716, 731, 789
BslI CCNNNNNNNGG 2 cut(s) 830, 1055
BsmAI GTCTC 6 cut(s) 661, 718, 794, 874, 922, 1307
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 1 cut(s) 1045
Bso31I GGTCTC 2 cut(s) 718, 922
Bsp143I GATC 4 cut(s) 4, 28, 482, 520
BspACI CCGC 6 cut(s) 129, 140, 176, 686, 728, 1139
BspANI GGCC 1 cut(s) 1045
BspCNI CTCAG 3 cut(s) 64, 559, 884
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 6, 124
BspPI GGATC 3 cut(s) 12, 23, 515
BspQI GCTCTTC 1 cut(s) 829
BspTNI GGTCTC 2 cut(s) 718, 922
BsrDI GCAATG 1 cut(s) 1425
BsrFI RCCGGY 1 cut(s) 715
BsrI ACTGG 4 cut(s) 197, 331, 384, 1111
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 633, 922
BssMI GATC 4 cut(s) 4, 28, 482, 520
BssNI GRCGYC 1 cut(s) 919
Bst2UI CCWGG 2 cut(s) 634, 1298
Bst4CI ACNGT 4 cut(s) 693, 699, 766, 805
Bst6I CTCTTC 3 cut(s) 808, 829, 1030
BstACI GRCGYC 1 cut(s) 919
BstC8I GCNNGC 4 cut(s) 290, 294, 423, 774
BstDEI CTNAG 5 cut(s) 51, 546, 871, 1050, 1221
BstF5I GGATG 3 cut(s) 37, 150, 208
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 4 cut(s) 7, 31, 485, 523
BstMAI GTCTC 6 cut(s) 661, 718, 794, 874, 922, 1307
BstMBI GATC 4 cut(s) 4, 28, 482, 520
BstMWI GCNNNNNNNGC 5 cut(s) 260, 347, 712, 953, 1081
BstNI CCWGG 2 cut(s) 634, 1298
BstSCI CCNGG 3 cut(s) 632, 730, 1296
BstSFI CTRYAG 1 cut(s) 861
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 9 cut(s) 179, 190, 193, 272, 724, 763, 826, 1338, 1360
BstV2I GAAGAC 2 cut(s) 386, 1129
BstX2I RGATCY 2 cut(s) 4, 482
BstYI RGATCY 2 cut(s) 4, 482
BsuRI GGCC 1 cut(s) 1045
BtsCI GGATG 3 cut(s) 37, 150, 208
BtsI GCAGTG 1 cut(s) 1281
BtsIMutI CAGTG 5 cut(s) 324, 391, 891, 1152, 1281
Cac8I GCNNGC 4 cut(s) 290, 294, 423, 774
CaiI CAGNNNCTG 1 cut(s) 1297
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 715
Cfr13I GGNCC 2 cut(s) 122, 1294
CseI GACGC 2 cut(s) 927, 953
Csp6I GTAC 2 cut(s) 307, 1104
CviAII CATG 4 cut(s) 241, 344, 400, 1336
CviQI GTAC 2 cut(s) 307, 1104
DdeI CTNAG 5 cut(s) 51, 546, 871, 1050, 1221
DpnI GATC 4 cut(s) 6, 30, 484, 522
DpnII GATC 4 cut(s) 4, 28, 482, 520
DrdI GACNNNNNNGTC 1 cut(s) 732
DseDI GACNNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 808, 829, 1030
EarI CTCTTC 3 cut(s) 808, 829, 1030
Eco31I GGTCTC 2 cut(s) 718, 922
Eco47I GGWCC 2 cut(s) 122, 1294
Eco57I CTGAAG 2 cut(s) 867, 1208
EcoO109I RGGNCCY 1 cut(s) 1294
EcoRII CCWGG 2 cut(s) 632, 1296
FaeI CATG 4 cut(s) 244, 347, 403, 1339
FatI CATG 4 cut(s) 240, 343, 399, 1335
FblI GTMKAC 2 cut(s) 571, 820
FokI GGATG 3 cut(s) 24, 137, 195
FspBI CTAG 3 cut(s) 453, 465, 741
GlaI GCGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 846
GsuI CTGGAG 2 cut(s) 180, 861
HaeIII GGCC 1 cut(s) 1045
HapII CCGG 5 cut(s) 120, 524, 716, 731, 789
HgaI GACGC 2 cut(s) 927, 953
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 919
Hin1II CATG 4 cut(s) 244, 347, 403, 1339
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 4 cut(s) 357, 499, 572, 943
HindII GTYRAC 4 cut(s) 357, 499, 572, 943
HindIII AAGCTT 2 cut(s) 419, 1093
HinfI GANTC 2 cut(s) 331, 391
HpaII CCGG 5 cut(s) 120, 524, 716, 731, 789
HphI GGTGA 5 cut(s) 67, 109, 622, 778, 1184
Hpy166II GTNNAC 6 cut(s) 57, 357, 499, 572, 821, 943
Hpy188I TCNGA 6 cut(s) 238, 487, 549, 615, 828, 1249
Hpy188III TCNNGA 6 cut(s) 370, 470, 660, 1024, 1069, 1158
Hpy8I GTNNAC 6 cut(s) 57, 357, 499, 572, 821, 943
Hpy99I CGWCG 2 cut(s) 137, 766
HpyAV CCTTC 4 cut(s) 18, 100, 121, 1295
HpyCH4III ACNGT 4 cut(s) 693, 699, 766, 805
HpyCH4IV ACGT 2 cut(s) 559, 993
HpyCH4V TGCA 6 cut(s) 20, 249, 260, 1019, 1348, 1423
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 347, 712, 953, 1081
HpyF3I CTNAG 5 cut(s) 51, 546, 871, 1050, 1221
HpySE526I ACGT 2 cut(s) 559, 993
Hsp92I GRCGYC 1 cut(s) 919
Hsp92II CATG 4 cut(s) 244, 347, 403, 1339
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 4 cut(s) 4, 28, 482, 520
LguI GCTCTTC 1 cut(s) 829
LmnI GCTCC 6 cut(s) 175, 347, 466, 880, 973, 1151
Lsp1109I GCAGC 9 cut(s) 179, 190, 193, 272, 724, 763, 826, 1338, 1360
MaeI CTAG 3 cut(s) 453, 465, 741
MaeII ACGT 2 cut(s) 559, 993
MaeIII GTNAC 3 cut(s) 693, 699, 1172
MalI GATC 4 cut(s) 6, 30, 484, 522
MboI GATC 4 cut(s) 4, 28, 482, 520
MflI RGATCY 2 cut(s) 4, 482
MluCI AATT 3 cut(s) 318, 647, 1233
MseI TTAA 4 cut(s) 266, 405, 555, 720
MspA1I CMGCKG 2 cut(s) 776, 1351
MspI CCGG 5 cut(s) 120, 524, 716, 731, 789
MspR9I CCNGG 3 cut(s) 634, 732, 1298
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 2 cut(s) 634, 1298
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 5 cut(s) 260, 347, 712, 953, 1081
NciI CCSGG 1 cut(s) 732
NdeII GATC 4 cut(s) 4, 28, 482, 520
NlaIII CATG 4 cut(s) 244, 347, 403, 1339
NlaIV GGNNCC 2 cut(s) 6, 124
NmeAIII GCCGAG 1 cut(s) 947
NmuCI GTSAC 1 cut(s) 1172
PciSI GCTCTTC 1 cut(s) 829
PctI GAATGC 1 cut(s) 1141
PfeI GAWTC 2 cut(s) 331, 391
PpuMI RGGWCCY 1 cut(s) 1294
Psp5II RGGWCCY 1 cut(s) 1294
Psp6I CCWGG 2 cut(s) 632, 1296
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 632, 1296
PspN4I GGNNCC 2 cut(s) 6, 124
PspPI GGNCC 2 cut(s) 122, 1294
PspPPI RGGWCCY 1 cut(s) 1294
PstNI CAGNNNCTG 1 cut(s) 1297
PsuI RGATCY 2 cut(s) 4, 482
PvuII CAGCTG 2 cut(s) 776, 1351
RsaI GTAC 2 cut(s) 308, 1105
RsaNI GTAC 2 cut(s) 307, 1104
SalI GTCGAC 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 829
SaqAI TTAA 4 cut(s) 266, 405, 555, 720
Sau3AI GATC 4 cut(s) 4, 28, 482, 520
Sau96I GGNCC 2 cut(s) 122, 1294
ScrFI CCNGG 3 cut(s) 634, 732, 1298
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 122, 1294
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 3 cut(s) 318, 647, 1233
SsiI CCGC 6 cut(s) 129, 140, 176, 686, 728, 1139
SspMI CTAG 3 cut(s) 453, 465, 741
StyD4I CCNGG 3 cut(s) 632, 730, 1296
TaaI ACNGT 4 cut(s) 693, 699, 766, 805
TaiI ACGT 2 cut(s) 562, 996
TaqI TCGA 3 cut(s) 302, 571, 661
TasI AATT 3 cut(s) 318, 647, 1233
TauI GCSGC 2 cut(s) 142, 688
TfiI GAWTC 2 cut(s) 331, 391
Tru1I TTAA 4 cut(s) 266, 405, 555, 720
Tru9I TTAA 4 cut(s) 266, 405, 555, 720
TscAI CASTG 5 cut(s) 331, 391, 891, 1152, 1281
TseFI GTSAC 1 cut(s) 1172
TseI GCWGC 9 cut(s) 167, 178, 181, 260, 712, 776, 839, 1348, 1351
Tsp45I GTSAC 1 cut(s) 1172
TspDTI ATGAA 2 cut(s) 481, 1094
TspRI CASTG 5 cut(s) 331, 391, 891, 1152, 1281
VpaK11BI GGWCC 2 cut(s) 122, 1294
XapI RAATTY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 1294
XmiI GTMKAC 2 cut(s) 571, 820
XspI CTAG 3 cut(s) 453, 465, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.