Domain in histone families 1 and 5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48620 AT3G18035 AT3G18035 |
| fragaria_vesca | FvH4_5g17210 |
| malus_domestica | MD06G1230400.v1.1 MD14G1235000.v1.1 |
| prunus_persica | Prupe.5G231600_v2.0.a1 |
| pyrus_communis | pycom06g20160 pycom14g19600 |
| rosa_chinensis | RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581 |
| rosa_laevigata | RLG00000005435 |
| rosa_multiflora | Rmu_sc0002320.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00274790 |
| rosa_rugosa | Rorug06G0418100 |
| rosa_samantha | Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800 |
| rosa_wichuraiana | Rw7G001340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AatII | GACGTC | 1 cut(s) | 622 |
| AccBSI | CCGCTC | 1 cut(s) | 844 |
| AccI | GTMKAC | 1 cut(s) | 817 |
| AciI | CCGC | 9 cut(s) | 14, 44, 101, 149, 272, 350, 774, 821, 844 |
| AclWI | GGATC | 1 cut(s) | 917 |
| AcoI | YGGCCR | 2 cut(s) | 433, 437 |
| AcsI | RAATTY | 1 cut(s) | 928 |
| AcyI | GRCGYC | 1 cut(s) | 619 |
| AfeI | AGCGCT | 1 cut(s) | 1122 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 680, 747, 879 |
| AgsI | TTSAA | 6 cut(s) | 249, 326, 692, 952, 974, 1018 |
| AjnI | CCWGG | 3 cut(s) | 544, 613, 638 |
| AluBI | AGCT | 6 cut(s) | 360, 449, 632, 935, 992, 1034 |
| AluI | AGCT | 6 cut(s) | 360, 449, 632, 935, 992, 1034 |
| Alw26I | GTCTC | 1 cut(s) | 535 |
| AlwI | GGATC | 1 cut(s) | 917 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 920 |
| Ama87I | CYCGRG | 1 cut(s) | 365 |
| Aor51HI | AGCGCT | 1 cut(s) | 1122 |
| ApoI | RAATTY | 1 cut(s) | 928 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 969 |
| AspLEI | GCGC | 1 cut(s) | 1123 |
| AspS9I | GGNCC | 6 cut(s) | 704, 738, 750, 846, 870, 882 |
| AsuC2I | CCSGG | 4 cut(s) | 432, 519, 708, 834 |
| AsuHPI | GGTGA | 2 cut(s) | 137, 613 |
| AvaI | CYCGRG | 1 cut(s) | 365 |
| BanII | GRGCYC | 2 cut(s) | 372, 639 |
| BccI | CCATC | 1 cut(s) | 146 |
| BceAI | ACGGC | 1 cut(s) | 534 |
| BciT130I | CCWGG | 3 cut(s) | 546, 615, 640 |
| BcnI | CCSGG | 4 cut(s) | 432, 519, 708, 834 |
| BcoDI | GTCTC | 1 cut(s) | 535 |
| BfaI | CTAG | 1 cut(s) | 525 |
| BfmI | CTRYAG | 1 cut(s) | 912 |
| BfoI | RGCGCY | 1 cut(s) | 1124 |
| BlpI | GCTNAGC | 1 cut(s) | 633 |
| Bme1390I | CCNGG | 7 cut(s) | 432, 519, 546, 615, 640, 708, 834 |
| BmeT110I | CYCGRG | 1 cut(s) | 365 |
| BmgT120I | GGNCC | 6 cut(s) | 704, 738, 750, 846, 870, 882 |
| BmiI | GGNNCC | 1 cut(s) | 831 |
| BmrFI | CCNGG | 7 cut(s) | 432, 519, 546, 615, 640, 708, 834 |
| BmrI | ACTGGG | 1 cut(s) | 366 |
| BmsI | GCATC | 5 cut(s) | 61, 67, 73, 883, 905 |
| BmuI | ACTGGG | 1 cut(s) | 366 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 633 |
| BpuMI | CCSGG | 4 cut(s) | 432, 519, 708, 834 |
| BsaHI | GRCGYC | 1 cut(s) | 619 |
| BsaI | GGTCTC | 1 cut(s) | 535 |
| BsaJI | CCNNGG | 8 cut(s) | 408, 518, 638, 734, 809, 833, 873, 1077 |
| BsaWI | WCCGGW | 1 cut(s) | 481 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 680, 747, 879 |
| Bse118I | RCCGGY | 2 cut(s) | 435, 794 |
| Bse1I | ACTGG | 3 cut(s) | 372, 906, 966 |
| BseBI | CCWGG | 3 cut(s) | 546, 615, 640 |
| BseDI | CCNNGG | 8 cut(s) | 408, 518, 638, 734, 809, 833, 873, 1077 |
| BseGI | GGATG | 3 cut(s) | 418, 534, 898 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 680, 747, 879 |
| BseMII | CTCAG | 2 cut(s) | 410, 624 |
| BseNI | ACTGG | 3 cut(s) | 372, 906, 966 |
| BseRI | GAGGAG | 1 cut(s) | 622 |
| BseX3I | CGGCCG | 1 cut(s) | 433 |
| BsgI | GTGCAG | 1 cut(s) | 732 |
| Bsh1285I | CGRYCG | 1 cut(s) | 436 |
| BsiEI | CGRYCG | 1 cut(s) | 436 |
| BsiHKCI | CYCGRG | 1 cut(s) | 365 |
| BsiSI | CCGG | 8 cut(s) | 432, 436, 452, 482, 518, 707, 795, 833 |
| BslFI | GGGAC | 2 cut(s) | 606, 704 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 680, 747, 879 |
| BsmAI | GTCTC | 1 cut(s) | 535 |
| BsmFI | GGGAC | 2 cut(s) | 606, 704 |
| Bso31I | GGTCTC | 1 cut(s) | 535 |
| BsoBI | CYCGRG | 1 cut(s) | 365 |
| Bsp1286I | GDGCHC | 2 cut(s) | 372, 639 |
| Bsp143I | GATC | 1 cut(s) | 922 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 633 |
| BspACI | CCGC | 9 cut(s) | 14, 44, 101, 149, 272, 350, 774, 821, 844 |
| BspCNI | CTCAG | 2 cut(s) | 409, 625 |
| BspLI | GGNNCC | 1 cut(s) | 831 |
| BspMAI | CTGCAG | 1 cut(s) | 916 |
| BspPI | GGATC | 1 cut(s) | 917 |
| BspTNI | GGTCTC | 1 cut(s) | 535 |
| BsrBI | CCGCTC | 1 cut(s) | 844 |
| BsrFI | RCCGGY | 2 cut(s) | 435, 794 |
| BsrI | ACTGG | 3 cut(s) | 372, 906, 966 |
| BssAI | RCCGGY | 2 cut(s) | 435, 794 |
| BssECI | CCNNGG | 8 cut(s) | 408, 518, 638, 734, 809, 833, 873, 1077 |
| BssMI | GATC | 1 cut(s) | 922 |
| BssNI | GRCGYC | 1 cut(s) | 619 |
| BssT1I | CCWWGG | 2 cut(s) | 734, 1077 |
| Bst2UI | CCWGG | 3 cut(s) | 546, 615, 640 |
| Bst4CI | ACNGT | 4 cut(s) | 27, 171, 571, 646 |
| Bst6I | CTCTTC | 4 cut(s) | 533, 599, 784, 947 |
| BstACI | GRCGYC | 1 cut(s) | 619 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 461, 911 |
| BstC8I | GCNNGC | 6 cut(s) | 437, 796, 881, 1001, 1071, 1119 |
| BstDEI | CTNAG | 3 cut(s) | 396, 420, 633 |
| BstDSI | CCRYGG | 3 cut(s) | 408, 809, 873 |
| BstF5I | GGATG | 3 cut(s) | 418, 534, 898 |
| BstH2I | RGCGCY | 1 cut(s) | 1124 |
| BstHHI | GCGC | 1 cut(s) | 1123 |
| BstKTI | GATC | 1 cut(s) | 925 |
| BstMAI | GTCTC | 1 cut(s) | 535 |
| BstMBI | GATC | 1 cut(s) | 922 |
| BstMCI | CGRYCG | 1 cut(s) | 436 |
| BstNI | CCWGG | 3 cut(s) | 546, 615, 640 |
| BstSCI | CCNGG | 7 cut(s) | 430, 517, 544, 613, 638, 706, 832 |
| BstSFI | CTRYAG | 1 cut(s) | 912 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 409 |
| BstZI | CGGCCG | 1 cut(s) | 433 |
| BtgI | CCRYGG | 3 cut(s) | 408, 809, 873 |
| BtsCI | GGATG | 3 cut(s) | 418, 534, 898 |
| BtsI | GCAGTG | 2 cut(s) | 805, 1086 |
| BtsIMutI | CAGTG | 4 cut(s) | 379, 805, 899, 1086 |
| Cac8I | GCNNGC | 6 cut(s) | 437, 796, 881, 1001, 1071, 1119 |
| CaiI | CAGNNNCTG | 1 cut(s) | 920 |
| CfoI | GCGC | 1 cut(s) | 1123 |
| Cfr10I | RCCGGY | 2 cut(s) | 435, 794 |
| Cfr13I | GGNCC | 6 cut(s) | 704, 738, 750, 846, 870, 882 |
| CviAII | CATG | 1 cut(s) | 403 |
| DdeI | CTNAG | 3 cut(s) | 396, 420, 633 |
| DpnI | GATC | 1 cut(s) | 924 |
| DpnII | GATC | 1 cut(s) | 922 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| EaeI | YGGCCR | 2 cut(s) | 433, 437 |
| EagI | CGGCCG | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 4 cut(s) | 533, 599, 784, 947 |
| EarI | CTCTTC | 4 cut(s) | 533, 599, 784, 947 |
| EclXI | CGGCCG | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 2 cut(s) | 734, 1077 |
| Eco24I | GRGCYC | 2 cut(s) | 372, 639 |
| Eco31I | GGTCTC | 1 cut(s) | 535 |
| Eco47III | AGCGCT | 1 cut(s) | 1122 |
| Eco52I | CGGCCG | 1 cut(s) | 433 |
| Eco88I | CYCGRG | 1 cut(s) | 365 |
| EcoRII | CCWGG | 3 cut(s) | 544, 613, 638 |
| EcoT14I | CCWWGG | 2 cut(s) | 734, 1077 |
| EcoT22I | ATGCAT | 1 cut(s) | 898 |
| EcoT38I | GRGCYC | 2 cut(s) | 372, 639 |
| ErhI | CCWWGG | 2 cut(s) | 734, 1077 |
| FaeI | CATG | 1 cut(s) | 406 |
| FaiI | YATR | 5 cut(s) | 404, 467, 658, 660, 677 |
| FaqI | GGGAC | 2 cut(s) | 606, 704 |
| FatI | CATG | 1 cut(s) | 402 |
| FauI | CCCGC | 1 cut(s) | 156 |
| FauNDI | CATATG | 1 cut(s) | 658 |
| FblI | GTMKAC | 1 cut(s) | 817 |
| FokI | GGATG | 3 cut(s) | 425, 541, 905 |
| FriOI | GRGCYC | 2 cut(s) | 372, 639 |
| FseI | GGCCGGCC | 1 cut(s) | 439 |
| FspBI | CTAG | 1 cut(s) | 525 |
| GlaI | GCGC | 1 cut(s) | 1122 |
| HaeII | RGCGCY | 1 cut(s) | 1124 |
| HapII | CCGG | 8 cut(s) | 432, 436, 452, 482, 518, 707, 795, 833 |
| HhaI | GCGC | 1 cut(s) | 1123 |
| Hin1I | GRCGYC | 1 cut(s) | 619 |
| Hin1II | CATG | 1 cut(s) | 406 |
| Hin6I | GCGC | 1 cut(s) | 1121 |
| HinP1I | GCGC | 1 cut(s) | 1121 |
| HinfI | GANTC | 2 cut(s) | 97, 196 |
| HpaII | CCGG | 8 cut(s) | 432, 436, 452, 482, 518, 707, 795, 833 |
| HphI | GGTGA | 2 cut(s) | 137, 613 |
| Hpy166II | GTNNAC | 2 cut(s) | 515, 818 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 2 cut(s) | 365, 1015 |
| Hpy8I | GTNNAC | 2 cut(s) | 515, 818 |
| HpyAV | CCTTC | 3 cut(s) | 751, 883, 1058 |
| HpyCH4III | ACNGT | 4 cut(s) | 27, 171, 571, 646 |
| HpyCH4IV | ACGT | 1 cut(s) | 619 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 713, 896, 914, 1073, 1106 |
| HpyF3I | CTNAG | 3 cut(s) | 396, 420, 633 |
| HpySE526I | ACGT | 1 cut(s) | 619 |
| Hsp92I | GRCGYC | 1 cut(s) | 619 |
| Hsp92II | CATG | 1 cut(s) | 406 |
| HspAI | GCGC | 1 cut(s) | 1121 |
| KroI | GCCGGC | 2 cut(s) | 435, 794 |
| KroNI | GCCGGC | 2 cut(s) | 437, 796 |
| Kzo9I | GATC | 1 cut(s) | 922 |
| LmnI | GCTCC | 4 cut(s) | 454, 683, 841, 1128 |
| LweI | GCATC | 5 cut(s) | 61, 67, 73, 883, 905 |
| MaeI | CTAG | 1 cut(s) | 525 |
| MaeII | ACGT | 1 cut(s) | 619 |
| MalI | GATC | 1 cut(s) | 924 |
| MbiI | CCGCTC | 1 cut(s) | 844 |
| MboI | GATC | 1 cut(s) | 922 |
| MboII | GAAGA | 5 cut(s) | 547, 550, 616, 771, 964 |
| MhlI | GDGCHC | 2 cut(s) | 372, 639 |
| Mph1103I | ATGCAT | 1 cut(s) | 898 |
| MroNI | GCCGGC | 2 cut(s) | 435, 794 |
| MroXI | GAANNNNTTC | 1 cut(s) | 969 |
| MseI | TTAA | 3 cut(s) | 854, 977, 1097 |
| MslI | CAYNNNNRTG | 1 cut(s) | 407 |
| MspA1I | CMGCKG | 1 cut(s) | 1034 |
| MspI | CCGG | 8 cut(s) | 432, 436, 452, 482, 518, 707, 795, 833 |
| MspR9I | CCNGG | 7 cut(s) | 432, 519, 546, 615, 640, 708, 834 |
| MvaI | CCWGG | 3 cut(s) | 546, 615, 640 |
| NaeI | GCCGGC | 2 cut(s) | 437, 796 |
| NciI | CCSGG | 4 cut(s) | 432, 519, 708, 834 |
| NdeI | CATATG | 1 cut(s) | 658 |
| NdeII | GATC | 1 cut(s) | 922 |
| NgoMIV | GCCGGC | 2 cut(s) | 435, 794 |
| NlaIII | CATG | 1 cut(s) | 406 |
| NlaIV | GGNNCC | 1 cut(s) | 831 |
| NsiI | ATGCAT | 1 cut(s) | 898 |
| PdiI | GCCGGC | 2 cut(s) | 437, 796 |
| PdmI | GAANNNNTTC | 1 cut(s) | 969 |
| PfeI | GAWTC | 2 cut(s) | 97, 196 |
| Psp6I | CCWGG | 3 cut(s) | 544, 613, 638 |
| PspGI | CCWGG | 3 cut(s) | 544, 613, 638 |
| PspN4I | GGNNCC | 1 cut(s) | 831 |
| PspPI | GGNCC | 6 cut(s) | 704, 738, 750, 846, 870, 882 |
| PstI | CTGCAG | 1 cut(s) | 916 |
| PstNI | CAGNNNCTG | 1 cut(s) | 920 |
| PvuII | CAGCTG | 1 cut(s) | 1034 |
| RigI | GGCCGGCC | 1 cut(s) | 439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 407 |
| SaqAI | TTAA | 3 cut(s) | 854, 977, 1097 |
| Sau3AI | GATC | 1 cut(s) | 922 |
| Sau96I | GGNCC | 6 cut(s) | 704, 738, 750, 846, 870, 882 |
| ScrFI | CCNGG | 7 cut(s) | 432, 519, 546, 615, 640, 708, 834 |
| SduI | GDGCHC | 2 cut(s) | 372, 639 |
| SfaNI | GCATC | 5 cut(s) | 61, 67, 73, 883, 905 |
| SfcI | CTRYAG | 1 cut(s) | 912 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 407 |
| SsiI | CCGC | 9 cut(s) | 14, 44, 101, 149, 272, 350, 774, 821, 844 |
| SspI | AATATT | 1 cut(s) | 1102 |
| SspMI | CTAG | 1 cut(s) | 525 |
| StyD4I | CCNGG | 7 cut(s) | 430, 517, 544, 613, 638, 706, 832 |
| StyI | CCWWGG | 2 cut(s) | 734, 1077 |
| TaaI | ACNGT | 4 cut(s) | 27, 171, 571, 646 |
| TaiI | ACGT | 1 cut(s) | 622 |
| TaqI | TCGA | 2 cut(s) | 533, 575 |
| TauI | GCSGC | 4 cut(s) | 16, 352, 776, 847 |
| TfiI | GAWTC | 2 cut(s) | 97, 196 |
| Tru1I | TTAA | 3 cut(s) | 854, 977, 1097 |
| Tru9I | TTAA | 3 cut(s) | 854, 977, 1097 |
| TscAI | CASTG | 4 cut(s) | 379, 805, 906, 1093 |
| TspDTI | ATGAA | 1 cut(s) | 1038 |
| TspRI | CASTG | 4 cut(s) | 379, 805, 906, 1093 |
| XapI | RAATTY | 1 cut(s) | 928 |
| XmiI | GTMKAC | 1 cut(s) | 817 |
| XmnI | GAANNNNTTC | 1 cut(s) | 969 |
| XspI | CTAG | 1 cut(s) | 525 |
| ZraI | GACGTC | 1 cut(s) | 620 |
| Zsp2I | ATGCAT | 1 cut(s) | 898 |