Rh7BG016300

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009974
Physical Location & Seq
Forward (+)
1037184 .. 1040208
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG016300.1

Sequence Viewer

Length: 1527 bp
ATGGACCCACCACCTCCTCCCAATCCCAATCCTTATCCACCGCCGCCCATCCCCACCTCCACCGCCACCATCTCCGCCGTCCCAACCGCCGTGGAGCCTGACAACAACAACAACAACAACACCGCCGCCGCTGCTCATGTAGCTGCCAACCCCACTCATGCTCCTGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATATACACAGCTATTGCAGCGTTGAAGGAGAGAGACGGGTCGAGCAGGAGAGCTATAGCTAAGTACATCGAGCAGGTCTACCCGAGTCTCCCACCAACTCACTCGGCCTTGTTGACTCGCCATCTCAAACGACTCAAGAACTCTGGTCATCTTGAGATGGTCAAGAAGTCCTACAAGATCCCAGGTCCTCCCAGATCTGACGCTCCGCCTCCTCCTGCAGCCGACTCTCCTGCTCCTATCTCTGTTGCCTCTCCCGGTCAGCCCCGTGGCCGCGGCCGTCCTCCCAAGCCCAAGCCGGAACAGCAGCAGCAGCAGCAGCAGCTTATGCAGCAGCAGCCGCAGTTGCCACAGTTGATTGTTTCCCAACCGCAGCAGCATCCGCATCAGCATCAGCATCCGCATCAGCATCAGCATCAGCAGCACATTTTACAACAGCCCATTCCGATTCCGCAGCAGCCAATTCCCATTCCTCAGCAGCCAATTCCCATTTCTCACCCGCCATTTCCCATTTCTCAACAGTCATTTCCCATTTCTCAACAGCCGATTCCCTTTTCTCAACAGCCATTTTCCATTTCTCAACAGCCGATTTCGGTTTCAATTCCAATTCCAATTCCAATTCCGCAACAGCCAATTCCCATTCCCCAACAACACCCCATTGTCCAGCCCAATTTTCAATCTTTTCCACAGCCCACCCTGCCGCAGCAGAGCTTTCCCGAGCCCAATGTTCAGCAGCAGCCCAATTCTCAGCCCATGCCTGTGGATGAGCCTAAGAAGCGACCCGGCCGGCCACGCAAAGCTCCGGCAGCCCTTGCCATAGGGCAGAATAGTCCGGTTGTGTCAGCCAAGAGGGGCAGGGGTCGTCCACCGGGGTCTAGGATGTCGAAGAAGAGACCAGGCCGTCCTCCCAAACCCAAGACCGTTTCGAGTGTTTCGGGTTCTAATGGGCTGGTGAAGAGGAGGCCAGGACGTCCCTCCAAAGCTGAGCCCAGGACTGTGTTTATTCCATATGCTACTAATGTGCCTATAATTGGAGCATTTGAACAGACCAATGGGCCGGGTGCAGTAGTGCCACAACCAGCACCAAGGCCCAGAGGTCGGCCCAAGAAGGATAAGTCGGCTGCCGCCTCTTCTGGTGTGGCGACCGGCAGTGGTAAGCCACGGGGTAGACCGCCTCTGGTTCCGGGGGTGGAGCGGCCCAAGTTAAGTAGGAGTGGGAGGCCTGTGGGCAGGCCCAAGAAGGTAGTCCTCTTCTTTCTAATAATCTTCCAAGTTGTTAATTTTGTAATTGTTTTGTCCCATATTCCCATAATGAGTAAAGTTTTTTGA

Protein Analysis

508

Amino Acids

55.23

Weight (kDa)

11.41

Isoelectric Point (pI)

69.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 61 - 122 1.6e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1098
AatII GACGTC 1 cut(s) 1171
Acc36I ACCTGC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 1393
AccI GTMKAC 2 cut(s) 279, 1366
AccII CGCG 1 cut(s) 474
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 4 cut(s) 469, 475, 982, 986
AcyI GRCGYC 1 cut(s) 1168
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 1229, 1296
AgsI TTSAA 5 cut(s) 178, 226, 798, 875, 1241
AjnI CCWGG 4 cut(s) 382, 1093, 1162, 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 8 cut(s) 143, 212, 254, 260, 523, 909, 998, 1181
AluI AGCT 8 cut(s) 143, 212, 254, 260, 523, 909, 998, 1181
Alw26I GTCTC 3 cut(s) 228, 293, 1084
AlwI GGATC 1 cut(s) 373
Ama87I CYCGRG 2 cut(s) 283, 914
AspS9I GGNCC 7 cut(s) 4, 386, 1253, 1287, 1299, 1395, 1431
AsuC2I CCSGG 5 cut(s) 456, 981, 1068, 1257, 1383
AsuHPI GGTGA 2 cut(s) 686, 1162
AvaI CYCGRG 2 cut(s) 283, 914
AvaII GGWCC 2 cut(s) 4, 386
BanII GRGCYC 2 cut(s) 921, 1188
BbvCI CCTCAGC 1 cut(s) 672
BccI CCATC 4 cut(s) 56, 77, 330, 352
BceAI ACGGC 4 cut(s) 62, 74, 462, 1083
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 4 cut(s) 384, 1095, 1164, 1189
BcnI CCSGG 5 cut(s) 456, 981, 1068, 1257, 1383
BcoDI GTCTC 3 cut(s) 228, 293, 1084
BfaI CTAG 1 cut(s) 1074
BfmI CTRYAG 2 cut(s) 255, 417
BfuAI ACCTGC 1 cut(s) 265
BglII AGATCT 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 1182
Bme1390I CCNGG 9 cut(s) 384, 456, 981, 1068, 1095, 1164, 1189, 1257, 1383
Bme18I GGWCC 2 cut(s) 4, 386
BmeT110I CYCGRG 2 cut(s) 283, 914
BmgT120I GGNCC 7 cut(s) 4, 386, 1253, 1287, 1299, 1395, 1431
BmiI GGNNCC 3 cut(s) 6, 96, 1380
BmrFI CCNGG 9 cut(s) 384, 456, 981, 1068, 1095, 1164, 1189, 1257, 1383
BmsI GCATC 7 cut(s) 586, 592, 598, 604, 610, 616, 622
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 320, 374
BpuMI CCSGG 5 cut(s) 456, 981, 1068, 1257, 1383
BsaHI GRCGYC 1 cut(s) 1168
BsaI GGTCTC 1 cut(s) 1084
BsaJI CCNNGG 9 cut(s) 90, 382, 466, 472, 1067, 1187, 1283, 1358, 1382
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 1229, 1296
Bse118I RCCGGY 2 cut(s) 984, 1343
BseBI CCWGG 4 cut(s) 384, 1095, 1164, 1189
BseDI CCNNGG 9 cut(s) 90, 382, 466, 472, 1067, 1187, 1283, 1358, 1382
BseGI GGATG 5 cut(s) 48, 577, 595, 967, 1083
BseLI CCNNNNNNNGG 2 cut(s) 1229, 1296
BseMII CTCAG 4 cut(s) 186, 686, 959, 1173
BseRI GAGGAG 3 cut(s) 6, 402, 1171
BseX3I CGGCCG 2 cut(s) 475, 982
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 3 cut(s) 478, 985, 1344
BsiEI CGRYCG 3 cut(s) 478, 985, 1344
BsiHKCI CYCGRG 2 cut(s) 283, 914
BslFI GGGAC 3 cut(s) 65, 1155, 1480
BslI CCNNNNNNNGG 2 cut(s) 1229, 1296
BsmAI GTCTC 3 cut(s) 228, 293, 1084
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 65, 1155, 1480
Bso31I GGTCTC 1 cut(s) 1084
BsoBI CYCGRG 2 cut(s) 283, 914
Bsp1286I GDGCHC 2 cut(s) 921, 1188
Bsp143I GATC 2 cut(s) 378, 395
Bsp1720I GCTNAGC 1 cut(s) 1182
BspCNI CTCAG 4 cut(s) 187, 685, 958, 1174
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 6, 96, 1380
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 1084
BsrBI CCGCTC 1 cut(s) 1393
BsrFI RCCGGY 2 cut(s) 984, 1343
BssAI RCCGGY 2 cut(s) 984, 1343
BssECI CCNNGG 9 cut(s) 90, 382, 466, 472, 1067, 1187, 1283, 1358, 1382
BssMI GATC 2 cut(s) 378, 395
BssNI GRCGYC 1 cut(s) 1168
BssT1I CCWWGG 1 cut(s) 1283
Bst2UI CCWGG 4 cut(s) 384, 1095, 1164, 1189
Bst4CI ACNGT 4 cut(s) 552, 720, 1120, 1195
Bst6I CTCTTC 4 cut(s) 1082, 1148, 1333, 1454
BstACI GRCGYC 1 cut(s) 1168
BstAPI GCANNNNNTGC 2 cut(s) 526, 1010
BstC8I GCNNGC 2 cut(s) 986, 1430
BstDEI CTNAG 6 cut(s) 195, 261, 672, 945, 969, 1182
BstDSI CCRYGG 4 cut(s) 90, 466, 472, 1358
BstF5I GGATG 5 cut(s) 48, 577, 595, 967, 1083
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 2 cut(s) 381, 398
BstMAI GTCTC 3 cut(s) 228, 293, 1084
BstMBI GATC 2 cut(s) 378, 395
BstMCI CGRYCG 3 cut(s) 478, 985, 1344
BstNI CCWGG 4 cut(s) 384, 1095, 1164, 1189
BstSCI CCNGG 9 cut(s) 382, 454, 979, 1066, 1093, 1162, 1187, 1255, 1381
BstSFI CTRYAG 2 cut(s) 255, 417
BstUI CGCG 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 378, 395
BstXI CCANNNNNNTGG 1 cut(s) 958
BstYI RGATCY 2 cut(s) 378, 395
BstZI CGGCCG 2 cut(s) 475, 982
BtgI CCRYGG 4 cut(s) 90, 466, 472, 1358
BtsCI GGATG 5 cut(s) 48, 577, 595, 967, 1083
BtsI GCAGTG 1 cut(s) 1354
BtsIMutI CAGTG 1 cut(s) 1354
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 986, 1430
Cfr10I RCCGGY 2 cut(s) 984, 1343
Cfr13I GGNCC 7 cut(s) 4, 386, 1253, 1287, 1299, 1395, 1431
Cfr42I CCGCGG 1 cut(s) 475
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 137, 158, 952
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 6 cut(s) 195, 261, 672, 945, 969, 1182
DpnI GATC 2 cut(s) 380, 397
DpnII GATC 2 cut(s) 378, 395
DrdI GACNNNNNNGTC 1 cut(s) 1098
DseDI GACNNNNNNGTC 1 cut(s) 1098
EaeI YGGCCR 4 cut(s) 469, 475, 982, 986
EagI CGGCCG 2 cut(s) 475, 982
Eam1104I CTCTTC 4 cut(s) 1082, 1148, 1333, 1454
EarI CTCTTC 4 cut(s) 1082, 1148, 1333, 1454
EciI GGCGGA 2 cut(s) 64, 396
EclXI CGGCCG 2 cut(s) 475, 982
Eco130I CCWWGG 1 cut(s) 1283
Eco147I AGGCCT 1 cut(s) 1420
Eco24I GRGCYC 2 cut(s) 921, 1188
Eco31I GGTCTC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 4, 386
Eco52I CGGCCG 2 cut(s) 475, 982
Eco88I CYCGRG 2 cut(s) 283, 914
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 4 cut(s) 382, 1093, 1162, 1187
EcoT14I CCWWGG 1 cut(s) 1283
EcoT38I GRGCYC 2 cut(s) 921, 1188
ErhI CCWWGG 1 cut(s) 1283
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 3 cut(s) 140, 161, 955
FaqI GGGAC 3 cut(s) 65, 1155, 1480
FatI CATG 3 cut(s) 136, 157, 951
FauI CCCGC 1 cut(s) 705
FauNDI CATATG 1 cut(s) 1207
FblI GTMKAC 2 cut(s) 279, 1366
FokI GGATG 5 cut(s) 35, 564, 582, 974, 1090
FriOI GRGCYC 2 cut(s) 921, 1188
FseI GGCCGGCC 1 cut(s) 988
FspBI CTAG 1 cut(s) 1074
HgaI GACGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 1168
Hin1II CATG 3 cut(s) 140, 161, 955
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 6 cut(s) 286, 316, 333, 425, 646, 745
HphI GGTGA 2 cut(s) 686, 1162
Hpy166II GTNNAC 4 cut(s) 280, 315, 1064, 1367
Hpy188I TCNGA 2 cut(s) 400, 645
Hpy188III TCNNGA 4 cut(s) 337, 353, 364, 914
Hpy8I GTNNAC 4 cut(s) 280, 315, 1064, 1367
HpyAV CCTTC 3 cut(s) 220, 1300, 1432
HpyCH4III ACNGT 4 cut(s) 552, 720, 1120, 1195
HpyCH4IV ACGT 1 cut(s) 1168
HpyCH4V TGCA 4 cut(s) 218, 419, 529, 1262
HpyF3I CTNAG 6 cut(s) 195, 261, 672, 945, 969, 1182
HpySE526I ACGT 1 cut(s) 1168
Hsp92I GRCGYC 1 cut(s) 1168
Hsp92II CATG 3 cut(s) 140, 161, 955
KroI GCCGGC 1 cut(s) 984
KroNI GCCGGC 1 cut(s) 986
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 2 cut(s) 378, 395
LmnI GCTCC 7 cut(s) 94, 166, 409, 439, 1003, 1232, 1390
LweI GCATC 7 cut(s) 586, 592, 598, 604, 610, 616, 622
MaeI CTAG 1 cut(s) 1074
MaeII ACGT 1 cut(s) 1168
MalI GATC 2 cut(s) 380, 397
MbiI CCGCTC 1 cut(s) 1393
MboI GATC 2 cut(s) 378, 395
MboII GAAGA 6 cut(s) 1096, 1099, 1165, 1320, 1441, 1456
MflI RGATCY 2 cut(s) 378, 395
MhlI GDGCHC 2 cut(s) 921, 1188
MlyI GAGTC 4 cut(s) 295, 310, 327, 419
MroNI GCCGGC 1 cut(s) 984
MseI TTAA 2 cut(s) 1403, 1476
MslI CAYNNNNRTG 1 cut(s) 956
MspA1I CMGCKG 2 cut(s) 131, 474
MspR9I CCNGG 9 cut(s) 384, 456, 981, 1068, 1095, 1164, 1189, 1257, 1383
MvaI CCWGG 4 cut(s) 384, 1095, 1164, 1189
MvnI CGCG 1 cut(s) 474
NaeI GCCGGC 1 cut(s) 986
NciI CCSGG 5 cut(s) 456, 981, 1068, 1257, 1383
NdeI CATATG 1 cut(s) 1207
NdeII GATC 2 cut(s) 378, 395
NgoMIV GCCGGC 1 cut(s) 984
NlaIII CATG 3 cut(s) 140, 161, 955
NlaIV GGNNCC 3 cut(s) 6, 96, 1380
NmeAIII GCCGAG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 1420
PdiI GCCGGC 1 cut(s) 986
PfeI GAWTC 2 cut(s) 646, 745
PleI GAGTC 4 cut(s) 294, 310, 327, 419
PpsI GAGTC 4 cut(s) 294, 310, 327, 419
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 4 cut(s) 382, 1093, 1162, 1187
PspGI CCWGG 4 cut(s) 382, 1093, 1162, 1187
PspN4I GGNNCC 3 cut(s) 6, 96, 1380
PspPI GGNCC 7 cut(s) 4, 386, 1253, 1287, 1299, 1395, 1431
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 378, 395
RigI GGCCGGCC 1 cut(s) 988
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 956
SacII CCGCGG 1 cut(s) 475
SaqAI TTAA 2 cut(s) 1403, 1476
Sau3AI GATC 2 cut(s) 378, 395
Sau96I GGNCC 7 cut(s) 4, 386, 1253, 1287, 1299, 1395, 1431
SchI GAGTC 4 cut(s) 295, 310, 327, 419
ScrFI CCNGG 9 cut(s) 384, 456, 981, 1068, 1095, 1164, 1189, 1257, 1383
SduI GDGCHC 2 cut(s) 921, 1188
SfaNI GCATC 7 cut(s) 586, 592, 598, 604, 610, 616, 622
SfcI CTRYAG 2 cut(s) 255, 417
Sfr303I CCGCGG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 2 cut(s) 4, 386
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 335, 353
SmoI CTYRAG 2 cut(s) 335, 353
SseBI AGGCCT 1 cut(s) 1420
SspMI CTAG 1 cut(s) 1074
StuI AGGCCT 1 cut(s) 1420
StyD4I CCNGG 9 cut(s) 382, 454, 979, 1066, 1093, 1162, 1187, 1255, 1381
StyI CCWWGG 1 cut(s) 1283
TaaI ACNGT 4 cut(s) 552, 720, 1120, 1195
TaiI ACGT 1 cut(s) 1171
TaqI TCGA 4 cut(s) 242, 270, 1082, 1124
TatI WGTACW 1 cut(s) 264
TauI GCSGC 9 cut(s) 46, 128, 131, 474, 477, 541, 901, 1325, 1396
TfiI GAWTC 2 cut(s) 646, 745
Tru1I TTAA 2 cut(s) 1403, 1476
Tru9I TTAA 2 cut(s) 1403, 1476
TscAI CASTG 1 cut(s) 1354
TspRI CASTG 1 cut(s) 1354
VpaK11BI GGWCC 2 cut(s) 4, 386
XmiI GTMKAC 2 cut(s) 279, 1366
XspI CTAG 1 cut(s) 1074
ZraI GACGTC 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.