Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009974

Physical Location & Seq

Genomic Coordinates Forward (+)

14395530 .. 14395841

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG161800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCAAAGCAAACTTAGCTGCCGAGAAGGGGGCGTGGAACCTGACAACAACAACAACACCGCCGCCACTGCTCATGTAGCTGCCAACCCCACTCATGCTCCTGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATACACACAGCTATTGCAGCGTTGATGGAGAGAGACAGGTCGAGTAGGAGAGCTATAGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

67

Amino Acids

7.21

Weight (kDa)

8.02

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	40 - 67	4.3e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48620 AT3G18035 AT3G18035
fragaria_vesca	FvH4_5g17210
malus_domestica	MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica	Prupe.5G231600_v2.0.a1
pyrus_communis	pycom06g20160 pycom14g19600
rosa_chinensis	RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata	RLG00000005435
rosa_multiflora	Rmu_sc0002320.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274790
rosa_rugosa	Rorug06G0418100
rosa_samantha	Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana	Rw7G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 63
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	5 cut(s)	18, 80, 149, 191, 197
AluI	AGCT	5 cut(s)	18, 80, 149, 191, 197
Alw26I	GTCTC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	18, 80, 155
BbvI	GCAGC	3 cut(s)	5, 67, 167
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	4 cut(s)	19, 63, 81, 156
BlsI	GCNGC	4 cut(s)	20, 64, 82, 157
BmiI	GGNNCC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	5, 67, 167
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	60, 63
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	14, 132, 198
BstMAI	GTCTC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 68, 77, 155
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	5, 67, 167
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
CviAII	CATG	2 cut(s)	74, 95
CviJI	RGCY	5 cut(s)	18, 80, 149, 191, 197
CviKI_1	RGCY	5 cut(s)	18, 80, 149, 191, 197
DdeI	CTNAG	3 cut(s)	14, 132, 198
FaeI	CATG	2 cut(s)	77, 98
FaiI	YATR	4 cut(s)	75, 96, 129, 194
FatI	CATG	2 cut(s)	73, 94
Fnu4HI	GCNGC	4 cut(s)	19, 63, 81, 156
Fsp4HI	GCNGC	4 cut(s)	19, 63, 81, 156
GluI	GCNGC	4 cut(s)	19, 63, 81, 156
Hin1II	CATG	2 cut(s)	77, 98
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	4, 155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 68, 77, 155
HpyF3I	CTNAG	3 cut(s)	14, 132, 198
Hsp92II	CATG	2 cut(s)	77, 98
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	54, 114, 160
Lsp1109I	GCAGC	3 cut(s)	5, 67, 167
MnlI	CCTC	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	15, 68, 77, 155
NlaIII	CATG	2 cut(s)	77, 98
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	20, 64, 82, 157
PspN4I	GGNNCC	1 cut(s)	39
SatI	GCNGC	4 cut(s)	19, 63, 81, 156
SetI	ASST	7 cut(s)	20, 43, 82, 151, 179, 193, 199
SfcI	CTRYAG	1 cut(s)	192
SgeI	CNNG	8 cut(s)	35, 46, 53, 86, 107, 113, 187, 192
SsiI	CCGC	2 cut(s)	60, 63
TaqI	TCGA	1 cut(s)	179
TauI	GCSGC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	3 cut(s)	18, 80, 155
TspRI	CASTG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.