AT3G18035

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009974
Physical Location & Seq
Reverse (-)
6168963 .. 6172005
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18035.2

Sequence Viewer

Length: 1443 bp
ATGGATCCATCTCTTGGTGATCCTCATCATCCTCCTCAGTTCACCCCTTTTCCTCATTTTCCCACCTCCAATCATCATCCTTTAGGACCAAATCCGTACAATAACCATGTCGTCTTCCAACCGCAGCCGCAAACGCAAACGCAAATCCCGCAACCGCAGATGTTTCAGTTATCTCCACATGTTTCAATGCCCCACCCTCCTTACTCCGAAATGATTTGCGCTGCGATTGCGGCGTTAAACGAACCGGATGGTTCGAGCAAGATGGCAATTTCGAGATACATCGAGAGATGTTACACCGGTTTAACTTCTGCTCATGCTGCTTTGTTGACTCACCATCTCAAGACTTTGAAGACCAGTGGTGTTCTTTCTATGGTTAAGAAATCTTACAAAATTGCTGGTTCTTCTACTCCTCCTGCTAGTGTAGCTGTTGCTGCTGCTGCCGCCGCTCAAGGTCTCGATGTTCCCAGATCTGAGATTCTCCATTCAAGTAACAACGATCCCATGGCTTCTGGCTCTGCTTCTCAGCCTCTGAAACGAGGTCGTGGTCGTCCTCCTAAGCCTAAACCTGAATCTCAACCACAACCACTACAGCAACTTCCACCGACCAATCAAGTCCAGGCTAACGGACAGCCAATCTGGGAACAGCAGCAAGTTCAATCACCTGTTCCGGTTCCGACTCCGGTTACAGAGTCGGCGAAGAGAGGACCTGGTCGTCCAAGGAAGAACGGTTCTGCTGCTCCTGCTACTGCACCAATCGTTCAAGCTTCGGTTATGGCTGGAATTATGAAACGTAGAGGTAGACCACCGGGTCGTCGAGCTGCTGGGAGACAGAGGAAGCCCAAATCCGTTTCTTCTACTGCCTCTGTGTATCCTTATGTTGCTAATGGTGCTAGACGCAGAGGAAGGCCTAGGAGAGTTGTTGACCCTAGCAGTATTGTTAGTGTTGCTCCAGTAGGTGGTGAAAATGTGGCAGCGGTTGCGCCAGGGATGAAGCGTGGACGTGGACGACCACCTAAGATTGGTGGTGTTATCAGTAGGCTTATTATGAAGCCTAAGAGAGGACGAGGACGTCCTGTAGGTAGACCCAGAAAGATTGGAACATCAGTCACGACTGGGACACAAGATTCTGGAGAACTCAAGAAGAAGTTTGATATTTTTCAAGAGAAAGTGAAAGAAATTGTGAAGGTGTTGAAGGATGGAGTTACAAGTGAGAATCAAGCAGTGGTGCAAGCCATAAAAGATCTGGAAGCACTAACAGTGACGGAGACCGTTGAGCCACAAGTTATGGAAGAAGTGCAGCCAGAGGAGACTGCAGCACCACAGACTGAAGCTCAACAAACTGAAGCTGCTGAGACACAAGGAGGACAAGAAGAAGGACAAGAAAGAGAAGGAGAAACACAGACCCAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTGA

Protein Analysis

480

Amino Acids

51.52

Weight (kDa)

9.95

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 65 - 126 1.8e-13 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 711, 807, 1068
AatII GACGTC 1 cut(s) 1072
AccB7I CCANNNNNTGG 2 cut(s) 14, 956
AccBSI CCGCTC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 799, 1081
AciI CCGC 8 cut(s) 122, 128, 149, 155, 230, 441, 444, 974
AclWI GGATC 3 cut(s) 12, 14, 491
AcuI CTGAAG 2 cut(s) 1347, 1362
AcyI GRCGYC 1 cut(s) 1069
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 14, 956, 1019, 1058
AflIII ACRYGT 1 cut(s) 178
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 7 cut(s) 186, 349, 486, 656, 761, 1160, 1192
AjiI CACGTC 1 cut(s) 1001
AjnI CCWGG 3 cut(s) 615, 706, 982
AloI GAACNNNNNNTCC 2 cut(s) 712, 744
AluBI AGCT 6 cut(s) 425, 764, 818, 1331, 1346, 1433
AluI AGCT 6 cut(s) 425, 764, 818, 1331, 1346, 1433
Alw26I GTCTC 5 cut(s) 458, 820, 1259, 1301, 1346
AlwI GGATC 3 cut(s) 12, 14, 491
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 1 cut(s) 905
AsiGI ACCGGT 1 cut(s) 296
AspA2I CCTAGG 1 cut(s) 908
AspLEI GCGC 2 cut(s) 221, 982
AspS9I GGNCC 2 cut(s) 86, 704
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 5 cut(s) 29, 34, 323, 651, 971
AvaII GGWCC 2 cut(s) 86, 704
AvrII CCTAGG 1 cut(s) 908
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 106, 356
BccI CCATC 5 cut(s) 16, 242, 256, 342, 1190
BciT130I CCWGG 3 cut(s) 617, 708, 984
BciVI GTATCC 1 cut(s) 879
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 5 cut(s) 458, 820, 1259, 1301, 1346
BfaI CTAG 4 cut(s) 417, 891, 909, 927
BfmI CTRYAG 3 cut(s) 587, 1074, 1311
BfuI GTATCC 1 cut(s) 879
BglII AGATCT 2 cut(s) 467, 1240
BlnI CCTAGG 1 cut(s) 908
Bme1390I CCNGG 4 cut(s) 617, 708, 807, 984
Bme18I GGWCC 2 cut(s) 86, 704
BmgBI CACGTC 1 cut(s) 1001
BmgT120I GGNCC 2 cut(s) 86, 704
BmiI GGNNCC 2 cut(s) 6, 672
BmrFI CCNGG 4 cut(s) 617, 708, 807, 984
BmrI ACTGGG 1 cut(s) 1122
BmuI ACTGGG 1 cut(s) 1122
BpiI GAAGAC 2 cut(s) 106, 356
BpmI CTGGAG 2 cut(s) 933, 1149
Bpu10I CCTNAGC 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 323, 432, 1121
BpuMI CCSGG 1 cut(s) 807
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 1069
BsaI GGTCTC 2 cut(s) 458, 1259
BsaJI CCNNGG 4 cut(s) 501, 716, 908, 983
BsaWI WCCGGW 4 cut(s) 244, 296, 667, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 956, 1019, 1058
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 354, 950, 1117
Bse3DI GCAATG 1 cut(s) 1428
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 3 cut(s) 617, 708, 984
BseDI CCNNGG 4 cut(s) 501, 716, 908, 983
BseGI GGATG 5 cut(s) 28, 76, 253, 993, 1201
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 4 cut(s) 14, 956, 1019, 1058
BseMI GCAATG 1 cut(s) 1428
BseMII CTCAG 4 cut(s) 50, 462, 536, 1341
BseNI ACTGG 3 cut(s) 354, 950, 1117
BseRI GAGGAG 3 cut(s) 24, 399, 1319
BseYI CCCAGC 1 cut(s) 821
BsgI GTGCAG 2 cut(s) 732, 1316
BshFI GGCC 1 cut(s) 907
BshTI ACCGGT 1 cut(s) 296
BsiSI CCGG 5 cut(s) 245, 297, 668, 680, 806
BslFI GGGAC 1 cut(s) 1129
BslI CCNNNNNNNGG 4 cut(s) 14, 956, 1019, 1058
BsmAI GTCTC 5 cut(s) 458, 820, 1259, 1301, 1346
BsmFI GGGAC 1 cut(s) 1129
BsnI GGCC 1 cut(s) 907
Bso31I GGTCTC 2 cut(s) 458, 1259
Bsp143I GATC 5 cut(s) 4, 19, 467, 496, 1240
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 8 cut(s) 122, 128, 149, 155, 230, 441, 444, 974
BspANI GGCC 1 cut(s) 907
BspCNI CTCAG 4 cut(s) 49, 463, 535, 1342
BspLI GGNNCC 2 cut(s) 6, 672
BspMAI CTGCAG 1 cut(s) 1315
BspPI GGATC 3 cut(s) 12, 14, 491
BspTNI GGTCTC 2 cut(s) 458, 1259
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 1428
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 3 cut(s) 354, 950, 1117
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 501, 716, 908, 983
BssMI GATC 5 cut(s) 4, 19, 467, 496, 1240
BssNI GRCGYC 1 cut(s) 1069
BssT1I CCWWGG 3 cut(s) 501, 716, 908
Bst2UI CCWGG 3 cut(s) 617, 708, 984
Bst4CI ACNGT 3 cut(s) 728, 1258, 1270
Bst6I CTCTTC 1 cut(s) 692
BstACI GRCGYC 1 cut(s) 1069
BstAPI GCANNNNNTGC 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 1230
BstDEI CTNAG 7 cut(s) 36, 471, 522, 555, 1014, 1053, 1350
BstDSI CCRYGG 1 cut(s) 501
BstENI CCTNNNNNAGG 1 cut(s) 1056
BstF5I GGATG 5 cut(s) 28, 76, 253, 993, 1201
BstHHI GCGC 2 cut(s) 221, 982
BstKTI GATC 5 cut(s) 7, 22, 470, 499, 1243
BstMAI GTCTC 5 cut(s) 458, 820, 1259, 1301, 1346
BstMBI GATC 5 cut(s) 4, 19, 467, 496, 1240
BstNI CCWGG 3 cut(s) 617, 708, 984
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 4 cut(s) 615, 706, 805, 982
BstSFI CTRYAG 3 cut(s) 587, 1074, 1311
BstV2I GAAGAC 2 cut(s) 106, 356
BstX2I RGATCY 3 cut(s) 4, 467, 1240
BstYI RGATCY 3 cut(s) 4, 467, 1240
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 1 cut(s) 907
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 1001
BtsCI GGATG 5 cut(s) 28, 76, 253, 993, 1201
BtsI GCAGTG 1 cut(s) 1227
BtsIMutI CAGTG 3 cut(s) 361, 1227, 1263
Cac8I GCNNGC 1 cut(s) 1230
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 2 cut(s) 221, 982
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 86, 704
CseI GACGC 1 cut(s) 903
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 1 cut(s) 97
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 4 cut(s) 107, 179, 314, 502
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 7 cut(s) 36, 471, 522, 555, 1014, 1053, 1350
DpnI GATC 5 cut(s) 6, 21, 469, 498, 1242
DpnII GATC 5 cut(s) 4, 19, 467, 496, 1240
DrdI GACNNNNNNGTC 3 cut(s) 711, 807, 1068
DseDI GACNNNNNNGTC 3 cut(s) 711, 807, 1068
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 3 cut(s) 501, 716, 908
Eco147I AGGCCT 1 cut(s) 907
Eco31I GGTCTC 2 cut(s) 458, 1259
Eco47I GGWCC 2 cut(s) 86, 704
Eco57I CTGAAG 2 cut(s) 1347, 1362
EcoNI CCTNNNNNAGG 1 cut(s) 1056
EcoO109I RGGNCCY 1 cut(s) 704
EcoRII CCWGG 3 cut(s) 615, 706, 982
EcoT14I CCWWGG 3 cut(s) 501, 716, 908
ErhI CCWWGG 3 cut(s) 501, 716, 908
FaeI CATG 4 cut(s) 110, 182, 317, 505
FaqI GGGAC 1 cut(s) 1129
FatI CATG 4 cut(s) 106, 178, 313, 501
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 799, 1081
FokI GGATG 5 cut(s) 15, 63, 260, 1000, 1208
FspBI CTAG 4 cut(s) 417, 891, 909, 927
GlaI GCGC 2 cut(s) 220, 981
GsaI CCCAGC 1 cut(s) 825
GsuI CTGGAG 2 cut(s) 933, 1149
HaeIII GGCC 1 cut(s) 907
HapII CCGG 5 cut(s) 245, 297, 668, 680, 806
HgaI GACGC 1 cut(s) 903
HhaI GCGC 2 cut(s) 221, 982
Hin1I GRCGYC 1 cut(s) 1069
Hin1II CATG 4 cut(s) 110, 182, 317, 505
Hin6I GCGC 2 cut(s) 219, 980
HinP1I GCGC 2 cut(s) 219, 980
HincII GTYRAC 2 cut(s) 327, 922
HindII GTYRAC 2 cut(s) 327, 922
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 7 cut(s) 328, 475, 569, 676, 689, 1124, 1213
HpaII CCGG 5 cut(s) 245, 297, 668, 680, 806
HphI GGTGA 5 cut(s) 29, 34, 323, 651, 971
Hpy166II GTNNAC 7 cut(s) 42, 327, 800, 922, 998, 1004, 1082
Hpy188I TCNGA 5 cut(s) 208, 472, 531, 675, 1442
Hpy188III TCNNGA 9 cut(s) 273, 283, 340, 455, 1108, 1128, 1138, 1160, 1244
Hpy8I GTNNAC 7 cut(s) 42, 327, 800, 922, 998, 1004, 1082
Hpy99I CGWCG 1 cut(s) 816
HpyAV CCTTC 5 cut(s) 897, 1177, 1186, 1367, 1382
HpyCH4III ACNGT 3 cut(s) 728, 1258, 1270
HpyCH4IV ACGT 3 cut(s) 790, 1000, 1069
HpyCH4V TGCA 5 cut(s) 749, 1228, 1297, 1313, 1426
HpyF3I CTNAG 7 cut(s) 36, 471, 522, 555, 1014, 1053, 1350
HpySE526I ACGT 3 cut(s) 790, 1000, 1069
Hsp92I GRCGYC 1 cut(s) 1069
Hsp92II CATG 4 cut(s) 110, 182, 317, 505
HspAI GCGC 2 cut(s) 219, 980
Kzo9I GATC 5 cut(s) 4, 19, 467, 496, 1240
LmnI GCTCC 2 cut(s) 742, 952
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 4 cut(s) 417, 891, 909, 927
MaeII ACGT 3 cut(s) 790, 1000, 1069
MaeIII GTNAC 6 cut(s) 290, 488, 682, 1105, 1201, 1258
MalI GATC 5 cut(s) 6, 21, 469, 498, 1242
MbiI CCGCTC 1 cut(s) 446
MboI GATC 5 cut(s) 4, 19, 467, 496, 1240
MboII GAAGA 9 cut(s) 106, 361, 393, 709, 733, 843, 1153, 1301, 1382
MflI RGATCY 3 cut(s) 4, 467, 1240
MluCI AATT 4 cut(s) 267, 390, 780, 1176
MlyI GAGTC 3 cut(s) 322, 670, 698
MmeI TCCRAC 2 cut(s) 142, 698
MseI TTAA 3 cut(s) 236, 302, 375
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 5 cut(s) 245, 297, 668, 680, 806
MspR9I CCNGG 4 cut(s) 617, 708, 807, 984
MvaI CCWGG 3 cut(s) 617, 708, 984
NciI CCSGG 1 cut(s) 807
NcoI CCATGG 1 cut(s) 501
NdeII GATC 5 cut(s) 4, 19, 467, 496, 1240
NlaIII CATG 4 cut(s) 110, 182, 317, 505
NlaIV GGNNCC 2 cut(s) 6, 672
NmuCI GTSAC 2 cut(s) 1105, 1258
NspI RCATGY 1 cut(s) 182
PceI AGGCCT 1 cut(s) 907
PciI ACATGT 1 cut(s) 178
PfeI GAWTC 4 cut(s) 475, 569, 1124, 1213
PflFI GACNNNGTC 1 cut(s) 708
PflMI CCANNNNNTGG 2 cut(s) 14, 956
PinAI ACCGGT 1 cut(s) 296
PleI GAGTC 3 cut(s) 322, 670, 697
PpsI GAGTC 3 cut(s) 322, 670, 697
PpuMI RGGWCCY 1 cut(s) 704
PscI ACATGT 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 3 cut(s) 615, 706, 982
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 3 cut(s) 615, 706, 982
PspN4I GGNNCC 2 cut(s) 6, 672
PspPI GGNCC 2 cut(s) 86, 704
PspPPI RGGWCCY 1 cut(s) 704
PstI CTGCAG 1 cut(s) 1315
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 3 cut(s) 4, 467, 1240
PsyI GACNNNGTC 1 cut(s) 708
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 236, 302, 375
Sau3AI GATC 5 cut(s) 4, 19, 467, 496, 1240
Sau96I GGNCC 2 cut(s) 86, 704
SchI GAGTC 3 cut(s) 322, 670, 698
ScrFI CCNGG 4 cut(s) 617, 708, 807, 984
SexAI ACCWGGT 1 cut(s) 706
SfcI CTRYAG 3 cut(s) 587, 1074, 1311
SinI GGWCC 2 cut(s) 86, 704
SmlI CTYRAG 3 cut(s) 338, 447, 1136
SmoI CTYRAG 3 cut(s) 338, 447, 1136
Sse9I AATT 4 cut(s) 267, 390, 780, 1176
SseBI AGGCCT 1 cut(s) 907
SsiI CCGC 8 cut(s) 122, 128, 149, 155, 230, 441, 444, 974
SspMI CTAG 4 cut(s) 417, 891, 909, 927
StuI AGGCCT 1 cut(s) 907
StyD4I CCNGG 4 cut(s) 615, 706, 805, 982
StyI CCWWGG 3 cut(s) 501, 716, 908
TaaI ACNGT 3 cut(s) 728, 1258, 1270
TaiI ACGT 3 cut(s) 793, 1003, 1072
TaqI TCGA 5 cut(s) 254, 272, 282, 456, 814
TasI AATT 4 cut(s) 267, 390, 780, 1176
TauI GCSGC 4 cut(s) 130, 233, 443, 446
TfiI GAWTC 4 cut(s) 475, 569, 1124, 1213
Tru1I TTAA 3 cut(s) 236, 302, 375
Tru9I TTAA 3 cut(s) 236, 302, 375
TscAI CASTG 3 cut(s) 361, 1227, 1263
TseFI GTSAC 2 cut(s) 1105, 1258
Tsp45I GTSAC 2 cut(s) 1105, 1258
TspDTI ATGAA 3 cut(s) 800, 1004, 1061
TspGWI ACGGA 4 cut(s) 84, 639, 835, 1277
TspRI CASTG 3 cut(s) 361, 1227, 1263
Tth111I GACNNNGTC 1 cut(s) 708
Van91I CCANNNNNTGG 2 cut(s) 14, 956
VpaK11BI GGWCC 2 cut(s) 86, 704
XagI CCTNNNNNAGG 1 cut(s) 1056
XceI RCATGY 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1240
XmaJI CCTAGG 1 cut(s) 908
XmiI GTMKAC 2 cut(s) 799, 1081
XspI CTAG 4 cut(s) 417, 891, 909, 927
ZraI GACGTC 1 cut(s) 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.