FvH4_5g17210

Domain in histone families 1 and 5

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
9822937 .. 9826404
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17210.t1

Sequence Viewer

Length: 1545 bp
ATGGACCCACCTCCTCCTCCTCCCAATCTTTATCCACCGCCGCCCATCTCCGCCGTCCCAACCACCGTGGAACCTGTTAACAACAACATCGCCCCCATCACTTATGCAGCTGCCAACCCAACTCACGCTCCCGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATATACACAGCTATAGCAGCGTTGAAGGAGAGAGACGGGTCGAGCAGGAGAGCTATAGCTAAGTACATCGAGCAGGTCTACCCGAGCCTCCCACCTACTCACTCAGCCTTGTTGACTCACCATCTCAAGCGCCTCAAGAACTCAGGTCATCTTGAGATGGTCAAGAAGTCCTACAAGATCCCTGGTCCTCCCAGATCTGACGCTGCTGCTCCTCCTCCTTTTCCTATTGACTCTCCTGCTCCTGCCTCAGCTGCCTCTCCTGCACAGCCACGTGGCCGAGGCCGTCCTCCCAAGCCCAAGCCGGACCACCAGCAGCTGATGCAGCAACAGTTGCCACAGCTGATTGCTCCCCAACAACACCAGCACATTTTACAACAACCCATTCCCATTCCGCAACAGCCGATTCCAATTCCGCTTCCTCAGCAGCCAATTTCATTTCCGATTCCTCAGCAGCCAATTTCAATTTCATATCCTCAACAACCGATTCCGATTCCGATGCCCATTCCGATTCCGCAAATGCCGATTCCCATTCCCCAGCACCCCATTGTCCCGCCCAATTTCCAATCTTTTCCACAGCCCACACTGCCGCAGACCTTTCCGGAGCCCATTCCTCAGCAGCAGCCCAATTCTCTGCCCATGGTGGTTTCTCCGGGGCCGGCAGATGTGCCCAAGAAGCGACCTGGCCGGCCACGTAAAGCTCCGGCAGCCCTTGCGATCGTGCAGAATAATAGTCCGGTAGTGAAGAGGGGCAGGGGCCGTCCTCCGGGGTCTAGGATGTCAAAGAAGAGACCAGGACGTCCTCCCAAACCCAAGACGGTGAGTGTTTCGGGTCCTAATGGACTTGTGAAGAGGAGACCAGGGCGTCCCTCCAAAGCTGAGCCGAGGAGTGTGTTTATTCCATATGCTACTAATGTGCCTATTATTGGGGCATTTGAGCAGAGCAACGGGCCCAATTCAGTAGTGCCACTGCCTGCACCGAGGCCCAGAGGTCGGCCCAAGAAGGATAAGTCGGCTGCTGCGTCTTCTGGTGTGGCTGCGGGCACTGGTAAGCCGCGGGGCAGACCACCTCTGGTTCCGGGGGTGGACCGCCCCAAGTTAAGTAGGAGTGGAAGGCCTGTGGGCAGGCCCAAGAAGGATGCAACACTGGCAATAACTGCAGCACCTGATCCAAATATAGCTGCAAACGCAGAATTGAAGAGGAAACTGGAATACTTTCAATCAAGAGTGGGTCAAGCTGTTGGTGTGCTAAAACCTTTCTTGAATAATGAAAGCGCAGTTGATGCCGCTGCTGCAATCCAAGAATTAGAAGGACTAGCAACCATGGACATGAGTGCCCCGTTAATTATTGCAACTGAACAGCCAGCACTCCAAAGTTGA

Protein Analysis

515

Amino Acids

55.06

Weight (kDa)

10.7

Isoelectric Point (pI)

71.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 50 - 111 3.7e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009974)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 963, 1029
AatII GACGTC 1 cut(s) 967
Acc36I ACCTGC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 1222
AccIII TCCGGA 1 cut(s) 766
AclWI GGATC 2 cut(s) 340, 1328
AcoI YGGCCR 3 cut(s) 442, 850, 854
AcvI CACGTG 1 cut(s) 440
AcyI GRCGYC 2 cut(s) 964, 1030
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 931, 1091, 1158
AgsI TTSAA 6 cut(s) 145, 193, 630, 1363, 1385, 1429
AjnI CCWGG 4 cut(s) 349, 847, 958, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
Alw26I GTCTC 3 cut(s) 195, 949, 1015
AlwI GGATC 2 cut(s) 340, 1328
AlwNI CAGNNNCTG 2 cut(s) 484, 1331
Ama87I CYCGRG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 766
ApaI GGGCCC 1 cut(s) 1119
Asp700I GAANNNNTTC 1 cut(s) 1380
AspLEI GCGC 2 cut(s) 300, 1442
AsuC2I CCSGG 3 cut(s) 819, 933, 1245
AsuHPI GGTGA 2 cut(s) 278, 997
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 5 cut(s) 4, 353, 472, 998, 1252
BaeGI GKGCMC 4 cut(s) 837, 1119, 1211, 1504
BanII GRGCYC 2 cut(s) 774, 1119
BbrPI CACGTG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 1182
BbvCI CCTCAGC 4 cut(s) 415, 588, 615, 780
BccI CCATC 4 cut(s) 53, 104, 297, 319
BceAI ACGGC 3 cut(s) 38, 435, 909
BcgI CGANNNNNNTGC 2 cut(s) 646, 680
BciT130I CCWGG 4 cut(s) 351, 849, 960, 1026
BcnI CCSGG 3 cut(s) 819, 933, 1245
BcoDI GTCTC 3 cut(s) 195, 949, 1015
BfaI CTAG 2 cut(s) 939, 1481
BfmI CTRYAG 3 cut(s) 180, 222, 1323
BfoI RGCGCY 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 1044
Bme1390I CCNGG 7 cut(s) 351, 819, 849, 933, 960, 1026, 1245
Bme18I GGWCC 5 cut(s) 4, 353, 472, 998, 1252
BmeT110I CYCGRG 1 cut(s) 250
BmiI GGNNCC 8 cut(s) 6, 72, 771, 822, 923, 999, 1117, 1242
BmrFI CCNGG 7 cut(s) 351, 819, 849, 933, 960, 1026, 1245
BmsI GCATC 4 cut(s) 477, 654, 1294, 1438
BpiI GAAGAC 1 cut(s) 1182
Bpu10I CCTNAGC 4 cut(s) 415, 588, 615, 780
Bpu1102I GCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 3 cut(s) 278, 287, 341
BpuMI CCSGG 3 cut(s) 819, 933, 1245
BsaAI YACGTR 2 cut(s) 440, 860
BsaHI GRCGYC 2 cut(s) 964, 1030
BsaI GGTCTC 2 cut(s) 949, 1015
BsaWI WCCGGW 2 cut(s) 766, 901
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 3 cut(s) 931, 1091, 1158
Bse118I RCCGGY 2 cut(s) 823, 852
Bse1I ACTGG 3 cut(s) 1216, 1317, 1377
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 4 cut(s) 351, 849, 960, 1026
BseGI GGATG 2 cut(s) 948, 1309
BseLI CCNNNNNNNGG 3 cut(s) 931, 1091, 1158
BseMII CTCAG 8 cut(s) 153, 285, 324, 429, 602, 629, 794, 1035
BseNI ACTGG 3 cut(s) 1216, 1317, 1377
BseRI GAGGAG 6 cut(s) 6, 9, 369, 372, 1033, 1066
BseSI GKGCMC 4 cut(s) 837, 1119, 1211, 1504
BseYI CCCAGC 1 cut(s) 702
BsgI GTGCAG 3 cut(s) 414, 908, 1125
Bsh1236I CGCG 1 cut(s) 1222
Bsh1285I CGRYCG 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 9 cut(s) 470, 767, 818, 824, 853, 869, 902, 932, 1244
BslFI GGGAC 3 cut(s) 41, 701, 1017
BslI CCNNNNNNNGG 3 cut(s) 931, 1091, 1158
BsmAI GTCTC 3 cut(s) 195, 949, 1015
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 41, 701, 1017
Bso31I GGTCTC 2 cut(s) 949, 1015
BsoBI CYCGRG 1 cut(s) 250
Bsp120I GGGCCC 1 cut(s) 1115
Bsp1286I GDGCHC 5 cut(s) 774, 837, 1119, 1211, 1504
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 4 cut(s) 345, 362, 882, 1333
Bsp1720I GCTNAGC 1 cut(s) 1044
Bsp19I CCATGG 2 cut(s) 804, 1488
BspCNI CTCAG 8 cut(s) 154, 284, 323, 428, 601, 628, 793, 1036
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 8 cut(s) 6, 72, 771, 822, 923, 999, 1117, 1242
BspMAI CTGCAG 1 cut(s) 1327
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 340, 1328
BspTNI GGTCTC 2 cut(s) 949, 1015
BsrFI RCCGGY 2 cut(s) 823, 852
BsrI ACTGG 3 cut(s) 1216, 1317, 1377
BssAI RCCGGY 2 cut(s) 823, 852
BssMI GATC 4 cut(s) 345, 362, 882, 1333
BssNI GRCGYC 2 cut(s) 964, 1030
BssT1I CCWWGG 2 cut(s) 804, 1488
Bst2UI CCWGG 4 cut(s) 351, 849, 960, 1026
Bst4CI ACNGT 3 cut(s) 67, 498, 985
Bst6I CTCTTC 4 cut(s) 905, 947, 1010, 1358
BstACI GRCGYC 2 cut(s) 964, 1030
BstAPI GCANNNNNTGC 5 cut(s) 487, 499, 878, 1322, 1448
BstBAI YACGTR 2 cut(s) 440, 860
BstC8I GCNNGC 6 cut(s) 825, 854, 1140, 1207, 1292, 1530
BstDEI CTNAG 9 cut(s) 162, 228, 271, 310, 415, 588, 615, 780, 1044
BstDSI CCRYGG 4 cut(s) 66, 804, 1220, 1488
BstF5I GGATG 2 cut(s) 948, 1309
BstFNI CGCG 1 cut(s) 1222
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 1442
BstKTI GATC 4 cut(s) 348, 365, 885, 1336
BstMAI GTCTC 3 cut(s) 195, 949, 1015
BstMBI GATC 4 cut(s) 345, 362, 882, 1333
BstMCI CGRYCG 1 cut(s) 885
BstNI CCWGG 4 cut(s) 351, 849, 960, 1026
BstSCI CCNGG 7 cut(s) 349, 817, 847, 931, 958, 1024, 1243
BstSFI CTRYAG 3 cut(s) 180, 222, 1323
BstSLI GKGCMC 4 cut(s) 837, 1119, 1211, 1504
BstUI CGCG 1 cut(s) 1222
BstV2I GAAGAC 1 cut(s) 1182
BstX2I RGATCY 2 cut(s) 345, 362
BstYI RGATCY 2 cut(s) 345, 362
BtgI CCRYGG 4 cut(s) 66, 804, 1220, 1488
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 948, 1309
BtsI GCAGTG 2 cut(s) 749, 1133
BtsIMutI CAGTG 4 cut(s) 749, 1133, 1209, 1310
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 6 cut(s) 825, 854, 1140, 1207, 1292, 1530
CaiI CAGNNNCTG 2 cut(s) 484, 1331
CfoI GCGC 2 cut(s) 300, 1442
Cfr10I RCCGGY 2 cut(s) 823, 852
Cfr42I CCGCGG 1 cut(s) 1223
CseI GACGC 3 cut(s) 377, 1019, 1176
Csp6I GTAC 1 cut(s) 232
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 3 cut(s) 805, 1489, 1495
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 9 cut(s) 162, 228, 271, 310, 415, 588, 615, 780, 1044
DpnI GATC 4 cut(s) 347, 364, 884, 1335
DpnII GATC 4 cut(s) 345, 362, 882, 1333
DrdI GACNNNNNNGTC 2 cut(s) 963, 1029
DseDI GACNNNNNNGTC 2 cut(s) 963, 1029
EaeI YGGCCR 3 cut(s) 442, 850, 854
Eam1104I CTCTTC 4 cut(s) 905, 947, 1010, 1358
EarI CTCTTC 4 cut(s) 905, 947, 1010, 1358
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 804, 1488
Eco147I AGGCCT 1 cut(s) 1282
Eco24I GRGCYC 2 cut(s) 774, 1119
Eco31I GGTCTC 2 cut(s) 949, 1015
Eco47I GGWCC 5 cut(s) 4, 353, 472, 998, 1252
Eco72I CACGTG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 998
EcoRII CCWGG 4 cut(s) 349, 847, 958, 1024
EcoT14I CCWWGG 2 cut(s) 804, 1488
EcoT38I GRGCYC 2 cut(s) 774, 1119
ErhI CCWWGG 2 cut(s) 804, 1488
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 3 cut(s) 808, 1492, 1498
FaqI GGGAC 3 cut(s) 41, 701, 1017
FatI CATG 3 cut(s) 804, 1488, 1494
FauI CCCGC 4 cut(s) 139, 726, 1198, 1215
FauNDI CATATG 1 cut(s) 1069
FblI GTMKAC 1 cut(s) 246
FokI GGATG 2 cut(s) 955, 1316
FriOI GRGCYC 2 cut(s) 774, 1119
FseI GGCCGGCC 1 cut(s) 856
FspBI CTAG 2 cut(s) 939, 1481
GlaI GCGC 2 cut(s) 299, 1441
GsaI CCCAGC 1 cut(s) 706
HaeII RGCGCY 1 cut(s) 301
HapII CCGG 9 cut(s) 470, 767, 818, 824, 853, 869, 902, 932, 1244
HgaI GACGC 3 cut(s) 377, 1019, 1176
HhaI GCGC 2 cut(s) 300, 1442
Hin1I GRCGYC 2 cut(s) 964, 1030
Hin1II CATG 3 cut(s) 808, 1492, 1498
Hin6I GCGC 2 cut(s) 298, 1440
HinP1I GCGC 2 cut(s) 298, 1440
HincII GTYRAC 2 cut(s) 79, 282
HindII GTYRAC 2 cut(s) 79, 282
HinfI GANTC 8 cut(s) 283, 398, 571, 610, 652, 658, 676, 691
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 9 cut(s) 470, 767, 818, 824, 853, 869, 902, 932, 1244
HphI GGTGA 2 cut(s) 278, 997
Hpy166II GTNNAC 4 cut(s) 79, 247, 282, 1252
Hpy188I TCNGA 5 cut(s) 367, 609, 657, 663, 675
Hpy188III TCNNGA 6 cut(s) 304, 320, 331, 767, 1389, 1426
Hpy8I GTNNAC 4 cut(s) 79, 247, 282, 1252
HpyAV CCTTC 5 cut(s) 187, 1162, 1272, 1294, 1469
HpyCH4III ACNGT 3 cut(s) 67, 498, 985
HpyCH4IV ACGT 3 cut(s) 439, 859, 964
HpyF3I CTNAG 9 cut(s) 162, 228, 271, 310, 415, 588, 615, 780, 1044
HpySE526I ACGT 3 cut(s) 439, 859, 964
Hsp92I GRCGYC 2 cut(s) 964, 1030
Hsp92II CATG 3 cut(s) 808, 1492, 1498
HspAI GCGC 2 cut(s) 298, 1440
Kpn2I TCCGGA 1 cut(s) 766
KroI GCCGGC 2 cut(s) 823, 852
KroNI GCCGGC 2 cut(s) 825, 854
KspAI GTTAAC 1 cut(s) 79
KspI CCGCGG 1 cut(s) 1223
Kzo9I GATC 4 cut(s) 345, 362, 882, 1333
LmnI GCTCC 6 cut(s) 133, 382, 412, 520, 769, 871
LweI GCATC 4 cut(s) 477, 654, 1294, 1438
MaeI CTAG 2 cut(s) 939, 1481
MaeII ACGT 3 cut(s) 439, 859, 964
MalI GATC 4 cut(s) 347, 364, 884, 1335
MboI GATC 4 cut(s) 345, 362, 882, 1333
MboII GAAGA 5 cut(s) 922, 964, 1027, 1182, 1375
MflI RGATCY 2 cut(s) 345, 362
MhlI GDGCHC 5 cut(s) 774, 837, 1119, 1211, 1504
MlyI GAGTC 2 cut(s) 277, 392
MroI TCCGGA 1 cut(s) 766
MroNI GCCGGC 2 cut(s) 823, 852
MroXI GAANNNNTTC 1 cut(s) 1380
MseI TTAA 3 cut(s) 78, 1265, 1508
MslI CAYNNNNRTG 1 cut(s) 1493
MspA1I CMGCKG 6 cut(s) 110, 419, 484, 508, 1222, 1454
MspI CCGG 9 cut(s) 470, 767, 818, 824, 853, 869, 902, 932, 1244
MspR9I CCNGG 7 cut(s) 351, 819, 849, 933, 960, 1026, 1245
MvaI CCWGG 4 cut(s) 351, 849, 960, 1026
MvnI CGCG 1 cut(s) 1222
NaeI GCCGGC 2 cut(s) 825, 854
NciI CCSGG 3 cut(s) 819, 933, 1245
NcoI CCATGG 2 cut(s) 804, 1488
NdeI CATATG 1 cut(s) 1069
NdeII GATC 4 cut(s) 345, 362, 882, 1333
NgoMIV GCCGGC 2 cut(s) 823, 852
NlaIII CATG 3 cut(s) 808, 1492, 1498
NlaIV GGNNCC 8 cut(s) 6, 72, 771, 822, 923, 999, 1117, 1242
NmeAIII GCCGAG 2 cut(s) 470, 1074
PceI AGGCCT 1 cut(s) 1282
PcsI WCGNNNNNNNCGW 1 cut(s) 1184
PdiI GCCGGC 2 cut(s) 825, 854
PdmI GAANNNNTTC 1 cut(s) 1380
PfeI GAWTC 6 cut(s) 571, 610, 652, 658, 676, 691
Ple19I CGATCG 1 cut(s) 885
PleI GAGTC 2 cut(s) 277, 392
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 2 cut(s) 277, 392
Ppu21I YACGTR 2 cut(s) 440, 860
PpuMI RGGWCCY 1 cut(s) 998
Psp5II RGGWCCY 1 cut(s) 998
Psp6I CCWGG 4 cut(s) 349, 847, 958, 1024
PspCI CACGTG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 4 cut(s) 349, 847, 958, 1024
PspN4I GGNNCC 8 cut(s) 6, 72, 771, 822, 923, 999, 1117, 1242
PspOMI GGGCCC 1 cut(s) 1115
PspPPI RGGWCCY 1 cut(s) 998
PstI CTGCAG 1 cut(s) 1327
PstNI CAGNNNCTG 2 cut(s) 484, 1331
PsuI RGATCY 2 cut(s) 345, 362
PvuI CGATCG 1 cut(s) 885
PvuII CAGCTG 4 cut(s) 110, 419, 484, 508
RigI GGCCGGCC 1 cut(s) 856
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 1493
SacII CCGCGG 1 cut(s) 1223
SaqAI TTAA 3 cut(s) 78, 1265, 1508
Sau3AI GATC 4 cut(s) 345, 362, 882, 1333
SchI GAGTC 2 cut(s) 277, 392
ScrFI CCNGG 7 cut(s) 351, 819, 849, 933, 960, 1026, 1245
SduI GDGCHC 5 cut(s) 774, 837, 1119, 1211, 1504
SfaNI GCATC 4 cut(s) 477, 654, 1294, 1438
SfcI CTRYAG 3 cut(s) 180, 222, 1323
Sfr303I CCGCGG 1 cut(s) 1223
SgrBI CCGCGG 1 cut(s) 1223
SinI GGWCC 5 cut(s) 4, 353, 472, 998, 1252
SmiMI CAYNNNNRTG 1 cut(s) 1493
SmlI CTYRAG 3 cut(s) 293, 302, 320
SmoI CTYRAG 3 cut(s) 293, 302, 320
SseBI AGGCCT 1 cut(s) 1282
SspMI CTAG 2 cut(s) 939, 1481
StuI AGGCCT 1 cut(s) 1282
StyD4I CCNGG 7 cut(s) 349, 817, 847, 931, 958, 1024, 1243
StyI CCWWGG 2 cut(s) 804, 1488
TaaI ACNGT 3 cut(s) 67, 498, 985
TaiI ACGT 3 cut(s) 442, 862, 967
TaqI TCGA 2 cut(s) 209, 237
TatI WGTACW 1 cut(s) 231
TauI GCSGC 4 cut(s) 43, 757, 1222, 1454
TfiI GAWTC 6 cut(s) 571, 610, 652, 658, 676, 691
Tru1I TTAA 3 cut(s) 78, 1265, 1508
Tru9I TTAA 3 cut(s) 78, 1265, 1508
TscAI CASTG 4 cut(s) 756, 1140, 1216, 1317
TspDTI ATGAA 3 cut(s) 591, 624, 1449
TspRI CASTG 4 cut(s) 756, 1140, 1216, 1317
VpaK11BI GGWCC 5 cut(s) 4, 353, 472, 998, 1252
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 1380
XspI CTAG 2 cut(s) 939, 1481
ZraI GACGTC 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.