Rh7CG017000

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009974
Physical Location & Seq
Forward (+)
1277152 .. 1279860
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG017000.1

Sequence Viewer

Length: 1617 bp
ATGGACCCACCACCTCCTCCCAATCCCAATCCTTATCCACCGCCGCCCATCCCCACCTCCACGGCCACCATCTCCGCCGTCCCAACCGCCGTGGAACCTGACAACAACGCCGCCGCCGCCGCTCATGTAGCTGCCAACCCCACTCATGCTCCTGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATATACACAGCTATTTCAGCGTTGAAGGAGAGAGACGGGTCGAGCAGGAGAGCTATAGCTAAGTACATCGAGCAGGTCTACCCGAGTCTCCCACCAACTCACTCGGCCTTGTTGACTCGCCATCTCAAACGACTCAAGAACTCTGGTCATCTTGAGATGGTCAAGAAGTCCTACAAGATCCCAGGCCCTCCCAGATCTGACGCTCCGCCTCCTCCTGCAACCGACTCTCCTGCTCCTACCTCTGTTGCCTCTCCCGGGCAGCCCCGTGGCCGCGGCCGTCCTCCCAAGCCCAAGCCGGAACAGCAGCTTATGCAGCCGCAGTTGCCACAGTTGATTGTTTCCCAACCGCACCAGCATCAGCATCAGCAGCACATTTTACAACAGCCCATTCCGATTCCGCAGCAGCCAATTCCCATTCCTCAACAGCCAATTCCCATTTCTCACCCGCCATTTCCCATTTCTCAACAGTCATTTCCCATTTCTCAACAGTCATTTCCCATTTCGCAACAGCCGATTCCCTTTTCTCAACAGCCATTTTCCATTTCTCAACAGCCGATTTCGGTTTCAATTCCAATTCCAATTCCGCAACAGCCAATTCCCATTCCCCAACAACACCCCATTGTCCAGCCCAATTTTCAATCTTTTCCACAGCCCACCCTGCTGCAGCAGAGCTTTCCCGAGCCCAATTCTCAGCCCATGCCCGTGGATGAGCCTAAGAAGCGACCCGGCCGGCCACGCAAAGCTCCGGCAGCCCTTGCCATAGGGCAGAATAGTCCGGTTGTGTCAGCCAAGAGGGGCAGGGGTCGTCCACCGGGGTCTAGGATGTCGAAGAAGAGACCAGGCCGTCCTCCCAAACCCAAGACTGTTTCCAGTGTTTCGGGTTCTAATGGGCTGGTGAAGAGGAGGCCAGGACGTCCCTCCAAAGCTGAGCCCAGGACTGTGTTTATTCCATATGCTACTAATGTGCCTATAATTGGAGCATTTGAACAGACCAATGGGCCGGGTGCAGTAGTCCCACAACCAGCACCAAGGCCCAGAGGTCGGCCCAAGAAGGATAAGTCGGCTGCCGCCTCTTCTGGTGTGGCCGCCGGCAGTGGTAAGCCACGGGGTAGACCGCCTCTGGTTCCGGGGGTGGAGCGGCCCAAGTTAAGTAGGAGTGGGAGGCCCGTGGGCAGGCCCAAGAAGGATGCATCACTGGCAATAACTGCAGCACCTGATCCAAATTTAGCTGCCAATGCTGAATTGAAGAGGAAACTGGAATACTTTCAATTAAGAGTGGGGGAAGCTGTTGGCGTGCTAAAACCTTTCTTGAACAATGAAAGCACAGCTGGTGTCGCTGCTGCAATCCAAGAATTAGAAGGGCTTGCAACCTTGGACATCACTGCCCCATTAAATATTGCAACTCAACAGCCAGCGCTCCAAAGTTGA

Protein Analysis

538

Amino Acids

57.56

Weight (kDa)

10.81

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 57 - 118 1.7e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1032
AatII GACGTC 1 cut(s) 1105
Acc36I ACCTGC 1 cut(s) 253
AccBSI CCGCTC 2 cut(s) 122, 1327
AccI GTMKAC 2 cut(s) 267, 1300
AccII CGCG 1 cut(s) 462
AclWI GGATC 2 cut(s) 361, 1400
AcoI YGGCCR 6 cut(s) 63, 457, 463, 916, 920, 1272
AcsI RAATTY 1 cut(s) 1411
AcyI GRCGYC 1 cut(s) 1102
AfaI GTAC 1 cut(s) 254
AfeI AGCGCT 1 cut(s) 1605
AfiI CCNNNNNNNGG 4 cut(s) 444, 1163, 1230, 1362
AgsI TTSAA 8 cut(s) 166, 214, 756, 827, 1175, 1435, 1457, 1501
AjnI CCWGG 4 cut(s) 370, 1027, 1096, 1121
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
Alw26I GTCTC 3 cut(s) 216, 281, 1018
AlwI GGATC 2 cut(s) 361, 1400
AlwNI CAGNNNCTG 1 cut(s) 1403
Ama87I CYCGRG 3 cut(s) 271, 443, 866
Aor51HI AGCGCT 1 cut(s) 1605
ApoI RAATTY 1 cut(s) 1411
Asp700I GAANNNNTTC 1 cut(s) 1452
AspLEI GCGC 1 cut(s) 1606
AspS9I GGNCC 8 cut(s) 4, 374, 1187, 1221, 1233, 1329, 1353, 1365
AsuC2I CCSGG 6 cut(s) 444, 445, 915, 1002, 1191, 1317
AsuHPI GGTGA 2 cut(s) 623, 1096
AvaI CYCGRG 3 cut(s) 271, 443, 866
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 873, 1122
BccI CCATC 4 cut(s) 56, 77, 318, 340
BceAI ACGGC 5 cut(s) 62, 74, 78, 450, 1017
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 4 cut(s) 372, 1029, 1098, 1123
BcnI CCSGG 6 cut(s) 444, 445, 915, 1002, 1191, 1317
BcoDI GTCTC 3 cut(s) 216, 281, 1018
BfaI CTAG 1 cut(s) 1008
BfmI CTRYAG 3 cut(s) 243, 851, 1395
BfoI RGCGCY 1 cut(s) 1607
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 1 cut(s) 383
BlpI GCTNAGC 1 cut(s) 1116
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 3 cut(s) 271, 443, 866
BmgT120I GGNCC 8 cut(s) 4, 374, 1187, 1221, 1233, 1329, 1353, 1365
BmiI GGNNCC 3 cut(s) 6, 96, 1314
BmsI GCATC 4 cut(s) 553, 559, 1366, 1388
Bpu1102I GCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 308, 362
BpuMI CCSGG 6 cut(s) 444, 445, 915, 1002, 1191, 1317
BsaHI GRCGYC 1 cut(s) 1102
BsaI GGTCTC 1 cut(s) 1018
BsaWI WCCGGW 1 cut(s) 964
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 400, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 444, 1163, 1230, 1362
Bse118I RCCGGY 2 cut(s) 918, 1277
Bse1I ACTGG 3 cut(s) 1059, 1389, 1449
BseBI CCWGG 4 cut(s) 372, 1029, 1098, 1123
BseGI GGATG 4 cut(s) 48, 901, 1017, 1381
BseLI CCNNNNNNNGG 4 cut(s) 444, 1163, 1230, 1362
BseMII CTCAG 3 cut(s) 174, 893, 1107
BseNI ACTGG 3 cut(s) 1059, 1389, 1449
BseRI GAGGAG 3 cut(s) 6, 390, 1105
BseX3I CGGCCG 2 cut(s) 463, 916
BsgI GTGCAG 1 cut(s) 1215
Bsh1236I CGCG 1 cut(s) 462
Bsh1285I CGRYCG 2 cut(s) 466, 919
BsiEI CGRYCG 2 cut(s) 466, 919
BsiHKCI CYCGRG 3 cut(s) 271, 443, 866
BslFI GGGAC 3 cut(s) 65, 1089, 1187
BslI CCNNNNNNNGG 4 cut(s) 444, 1163, 1230, 1362
BsmAI GTCTC 3 cut(s) 216, 281, 1018
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 3 cut(s) 65, 1089, 1187
Bso31I GGTCTC 1 cut(s) 1018
BsoBI CYCGRG 3 cut(s) 271, 443, 866
Bsp1286I GDGCHC 2 cut(s) 873, 1122
Bsp143I GATC 3 cut(s) 366, 383, 1405
Bsp1720I GCTNAGC 1 cut(s) 1116
BspCNI CTCAG 3 cut(s) 175, 892, 1108
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 6, 96, 1314
BspMAI CTGCAG 2 cut(s) 855, 1399
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 2 cut(s) 361, 1400
BspTNI GGTCTC 1 cut(s) 1018
BsrBI CCGCTC 2 cut(s) 122, 1327
BsrFI RCCGGY 2 cut(s) 918, 1277
BsrI ACTGG 3 cut(s) 1059, 1389, 1449
BssAI RCCGGY 2 cut(s) 918, 1277
BssMI GATC 3 cut(s) 366, 383, 1405
BssNI GRCGYC 1 cut(s) 1102
BssT1I CCWWGG 2 cut(s) 1217, 1560
Bst2UI CCWGG 4 cut(s) 372, 1029, 1098, 1123
Bst4CI ACNGT 5 cut(s) 519, 657, 678, 1054, 1129
Bst6I CTCTTC 4 cut(s) 1016, 1082, 1267, 1430
BstACI GRCGYC 1 cut(s) 1102
BstAPI GCANNNNNTGC 3 cut(s) 499, 944, 1394
BstC8I GCNNGC 6 cut(s) 920, 1279, 1364, 1484, 1554, 1602
BstDEI CTNAG 5 cut(s) 183, 249, 879, 903, 1116
BstDSI CCRYGG 7 cut(s) 60, 90, 454, 460, 891, 1292, 1356
BstF5I GGATG 4 cut(s) 48, 901, 1017, 1381
BstFNI CGCG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 1607
BstHHI GCGC 1 cut(s) 1606
BstKTI GATC 3 cut(s) 369, 386, 1408
BstMAI GTCTC 3 cut(s) 216, 281, 1018
BstMBI GATC 3 cut(s) 366, 383, 1405
BstMCI CGRYCG 2 cut(s) 466, 919
BstNI CCWGG 4 cut(s) 372, 1029, 1098, 1123
BstSFI CTRYAG 3 cut(s) 243, 851, 1395
BstUI CGCG 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 366, 383
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 2 cut(s) 366, 383
BstZI CGGCCG 2 cut(s) 463, 916
BtgI CCRYGG 7 cut(s) 60, 90, 454, 460, 891, 1292, 1356
BtsCI GGATG 4 cut(s) 48, 901, 1017, 1381
BtsI GCAGTG 2 cut(s) 1288, 1569
BtsIMutI CAGTG 4 cut(s) 1066, 1288, 1382, 1569
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 6 cut(s) 920, 1279, 1364, 1484, 1554, 1602
CaiI CAGNNNCTG 1 cut(s) 1403
CfoI GCGC 1 cut(s) 1606
Cfr10I RCCGGY 2 cut(s) 918, 1277
Cfr13I GGNCC 8 cut(s) 4, 374, 1187, 1221, 1233, 1329, 1353, 1365
Cfr42I CCGCGG 1 cut(s) 463
Cfr9I CCCGGG 1 cut(s) 443
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 125, 146, 886
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 5 cut(s) 183, 249, 879, 903, 1116
DpnI GATC 3 cut(s) 368, 385, 1407
DpnII GATC 3 cut(s) 366, 383, 1405
DrdI GACNNNNNNGTC 1 cut(s) 1032
DseDI GACNNNNNNGTC 1 cut(s) 1032
EaeI YGGCCR 6 cut(s) 63, 457, 463, 916, 920, 1272
EagI CGGCCG 2 cut(s) 463, 916
Eam1104I CTCTTC 4 cut(s) 1016, 1082, 1267, 1430
EarI CTCTTC 4 cut(s) 1016, 1082, 1267, 1430
EciI GGCGGA 2 cut(s) 64, 384
EclXI CGGCCG 2 cut(s) 463, 916
Eco130I CCWWGG 2 cut(s) 1217, 1560
Eco24I GRGCYC 2 cut(s) 873, 1122
Eco31I GGTCTC 1 cut(s) 1018
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 1605
Eco52I CGGCCG 2 cut(s) 463, 916
Eco88I CYCGRG 3 cut(s) 271, 443, 866
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 4 cut(s) 370, 1027, 1096, 1121
EcoT14I CCWWGG 2 cut(s) 1217, 1560
EcoT22I ATGCAT 1 cut(s) 1381
EcoT38I GRGCYC 2 cut(s) 873, 1122
ErhI CCWWGG 2 cut(s) 1217, 1560
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 128, 149, 889
FaqI GGGAC 3 cut(s) 65, 1089, 1187
FatI CATG 3 cut(s) 124, 145, 885
FauI CCCGC 1 cut(s) 642
FauNDI CATATG 1 cut(s) 1141
FblI GTMKAC 2 cut(s) 267, 1300
FokI GGATG 4 cut(s) 35, 908, 1024, 1388
FriOI GRGCYC 2 cut(s) 873, 1122
FseI GGCCGGCC 1 cut(s) 922
FspBI CTAG 1 cut(s) 1008
GlaI GCGC 1 cut(s) 1605
HaeII RGCGCY 1 cut(s) 1607
HgaI GACGC 1 cut(s) 398
HhaI GCGC 1 cut(s) 1606
Hin1I GRCGYC 1 cut(s) 1102
Hin1II CATG 3 cut(s) 128, 149, 889
Hin6I GCGC 1 cut(s) 1604
HinP1I GCGC 1 cut(s) 1604
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 6 cut(s) 274, 304, 321, 413, 583, 703
HphI GGTGA 2 cut(s) 623, 1096
Hpy166II GTNNAC 4 cut(s) 268, 303, 998, 1301
Hpy188I TCNGA 2 cut(s) 388, 582
Hpy188III TCNNGA 5 cut(s) 325, 341, 352, 866, 1498
Hpy8I GTNNAC 4 cut(s) 268, 303, 998, 1301
HpyAV CCTTC 4 cut(s) 208, 1234, 1366, 1541
HpyCH4III ACNGT 5 cut(s) 519, 657, 678, 1054, 1129
HpyCH4IV ACGT 1 cut(s) 1102
HpyCH4V TGCA 9 cut(s) 407, 502, 853, 1196, 1379, 1397, 1532, 1556, 1589
HpyF3I CTNAG 5 cut(s) 183, 249, 879, 903, 1116
HpySE526I ACGT 1 cut(s) 1102
Hsp92I GRCGYC 1 cut(s) 1102
Hsp92II CATG 3 cut(s) 128, 149, 889
HspAI GCGC 1 cut(s) 1604
KroI GCCGGC 2 cut(s) 918, 1277
KroNI GCCGGC 2 cut(s) 920, 1279
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 3 cut(s) 366, 383, 1405
LmnI GCTCC 7 cut(s) 154, 397, 427, 937, 1166, 1324, 1611
LweI GCATC 4 cut(s) 553, 559, 1366, 1388
MaeI CTAG 1 cut(s) 1008
MaeII ACGT 1 cut(s) 1102
MalI GATC 3 cut(s) 368, 385, 1407
MbiI CCGCTC 2 cut(s) 122, 1327
MboI GATC 3 cut(s) 366, 383, 1405
MboII GAAGA 5 cut(s) 1030, 1033, 1099, 1254, 1447
MflI RGATCY 2 cut(s) 366, 383
MhlI GDGCHC 2 cut(s) 873, 1122
MlyI GAGTC 4 cut(s) 283, 298, 315, 407
Mph1103I ATGCAT 1 cut(s) 1381
MroNI GCCGGC 2 cut(s) 918, 1277
MroXI GAANNNNTTC 1 cut(s) 1452
MseI TTAA 3 cut(s) 1337, 1460, 1580
MslI CAYNNNNRTG 1 cut(s) 890
MspA1I CMGCKG 2 cut(s) 462, 1517
MvaI CCWGG 4 cut(s) 372, 1029, 1098, 1123
MvnI CGCG 1 cut(s) 462
NaeI GCCGGC 2 cut(s) 920, 1279
NciI CCSGG 6 cut(s) 444, 445, 915, 1002, 1191, 1317
NdeI CATATG 1 cut(s) 1141
NdeII GATC 3 cut(s) 366, 383, 1405
NgoMIV GCCGGC 2 cut(s) 918, 1277
NlaIII CATG 3 cut(s) 128, 149, 889
NlaIV GGNNCC 3 cut(s) 6, 96, 1314
NmeAIII GCCGAG 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 1381
PcsI WCGNNNNNNNCGW 1 cut(s) 698
PdiI GCCGGC 2 cut(s) 920, 1279
PdmI GAANNNNTTC 1 cut(s) 1452
PfeI GAWTC 2 cut(s) 583, 703
PleI GAGTC 4 cut(s) 282, 298, 315, 407
PpsI GAGTC 4 cut(s) 282, 298, 315, 407
Psp6I CCWGG 4 cut(s) 370, 1027, 1096, 1121
PspGI CCWGG 4 cut(s) 370, 1027, 1096, 1121
PspN4I GGNNCC 3 cut(s) 6, 96, 1314
PspPI GGNCC 8 cut(s) 4, 374, 1187, 1221, 1233, 1329, 1353, 1365
PstI CTGCAG 2 cut(s) 855, 1399
PstNI CAGNNNCTG 1 cut(s) 1403
PsuI RGATCY 2 cut(s) 366, 383
PvuII CAGCTG 1 cut(s) 1517
RigI GGCCGGCC 1 cut(s) 922
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 890
SacII CCGCGG 1 cut(s) 463
SaqAI TTAA 3 cut(s) 1337, 1460, 1580
Sau3AI GATC 3 cut(s) 366, 383, 1405
Sau96I GGNCC 8 cut(s) 4, 374, 1187, 1221, 1233, 1329, 1353, 1365
SchI GAGTC 4 cut(s) 283, 298, 315, 407
SduI GDGCHC 2 cut(s) 873, 1122
SfaNI GCATC 4 cut(s) 553, 559, 1366, 1388
SfcI CTRYAG 3 cut(s) 243, 851, 1395
Sfr303I CCGCGG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 323, 341
SmoI CTYRAG 2 cut(s) 323, 341
SspI AATATT 1 cut(s) 1585
SspMI CTAG 1 cut(s) 1008
StyI CCWWGG 2 cut(s) 1217, 1560
TaaI ACNGT 5 cut(s) 519, 657, 678, 1054, 1129
TaiI ACGT 1 cut(s) 1105
TaqI TCGA 3 cut(s) 230, 258, 1016
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 583, 703
Tru1I TTAA 3 cut(s) 1337, 1460, 1580
Tru9I TTAA 3 cut(s) 1337, 1460, 1580
TscAI CASTG 4 cut(s) 1066, 1288, 1389, 1576
TspDTI ATGAA 1 cut(s) 1521
TspMI CCCGGG 1 cut(s) 443
TspRI CASTG 4 cut(s) 1066, 1288, 1389, 1576
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 1411
XmaI CCCGGG 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 267, 1300
XmnI GAANNNNTTC 1 cut(s) 1452
XspI CTAG 1 cut(s) 1008
ZraI GACGTC 1 cut(s) 1103
Zsp2I ATGCAT 1 cut(s) 1381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.