RchiOBHm_Chr7g0178581

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009974
Physical Location & Seq
Forward (+)
1208663 .. 1211671
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15914

Sequence Viewer

Length: 1629 bp
ATGGACCCACCACCTCCTCCGAATCCCAATCCTTATCCACCGCCGCCCATCCCCACCTCCGCCGCCACCATCTCCGCCGTCCCAACCGCCGTGGAACCTGACAACAACGCCGCCGCCGCTCATGTAGCTGCCAACCCCACTCATGCTCCTGCCCCTACTTTCAACCACCCTCCTTATGCTGAGATGATATACACAGCTATTGCAGCGTTGAAGGAGAGAGACGGGTCGAGCAGGAGAGCTATAGCTAAGTACATCGAGCAGGTCTACCCGAGTCTCCCACCAACTCACTCGGCCTTGTTGACTCGCCATCTCAAACGACTCAAGAACTCTGGTCATCTTGAGATGGTCAAGAAGTCGTACAAGATCCCAGGCCCTCCCAGATCTGACGCTCCGCCTCCTCCTGCAACCGACTCTCCTGCTCCTACCTCTGTTTCCTCTCCCGGGCAGCCCCGTGGCCGCGGCCGTCCTCCCAAGCCCAAGCCGGAACAGCAGCAGCCACAGTTGATTGTTTCCCAACCGCAGCAGCATCAGTATCAGCAGCACATTTTGCAACAGCCCATTCCGATTCCGCAGCAGCCAATTCCCATTCCTCAACAGCCATTTCCTATTCCCCAGCAGCCAATTCCCATTTCTCACCCGCCATTTCCCATTTCTCAACAGTCATTTCCCATTTCTCAACAGCCGATTCCCTTTTCTCAACAGCCATTTTCCATTTCTCAACAGCCGATTTCGGTTTCAATTCCAATTCCAATTCCAATTCCAATTCCGCAACAGCCAATTCCCATTCCCCAACAACACCCCATTGTCCAGCCCAATTTTCAATCTTTTCCACAGCCCACCCTGCCGCAGCAGAGCTTTCCCGAGCCCAATGTTCAGCAGCAGCCCAATTCTCAGCCCATGCCCGTGGATGAGCCTAAGAAGCGACCCGGCCGCCCACGCAAAGCTCCGGCAGCCCTTGCCATAGGGCAGAATAGCCCGGTTGTGTCAGCCAAGAGGGGCAGGGGTCGTCCACCGGGGTCTAGGATGTCAAAGAAGAGACCAGGCCGTCCTCCCAAACCCAAGACTGTTTCGAGTGTTTCGGGTTCTAATGGCCTGGTGAAGAGGAGGCCAGGACGTCCCTCCAAAGCTGAGCCCAGGACTGTGTTTATTCCATATGCTACTAATGTGCCTATAATTGGAGCATTTGAACAGACCAATGGGCCCGGTGCAGTAGTCCCACAACCAGCACCAAGGCCCAGAGGTCGGCCCAAGAAGGATAAGTCGGCTGCCGCCTCTTCTGGTGTGGCCGCCGGCAGTGGTAAGCCACGGGGTAGACCGCCTCTGGTTCCGGGGGTGGAGCGGCCCAAGTTAAGTAGGAGTGGGAGGCCCGTGGGCAGGCCCAAGAAGGATGCATCACTGGCAATAACTGCAGCACCTGATCCAAATTTAGCTGCCAATGCTGAATTGAAGAGGAAACTGGAATACTTTCAATTAAGAGTGGGGGAAGCTGTTGGCGTGCTAAAACCTTTCTTGAACAATGAAAGCACAGCTGGTGTCGCTGCTGCAATCCAAGAATTAGAAGGGCTTGCAACCTTGGACATCACTGCCCCATTAAATATTGCAACTCAACAGCCAGCGCTCCAAAGTTGA

Protein Analysis

542

Amino Acids

58.01

Weight (kDa)

10.75

Isoelectric Point (pI)

69.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 56 - 117 1.8e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1044
AatII GACGTC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 250
AccBSI CCGCTC 2 cut(s) 119, 1339
AccI GTMKAC 2 cut(s) 264, 1312
AccII CGCG 1 cut(s) 459
AclWI GGATC 2 cut(s) 358, 1412
AcoI YGGCCR 4 cut(s) 454, 460, 928, 1284
AcsI RAATTY 1 cut(s) 1423
AcyI GRCGYC 1 cut(s) 1114
AfaI GTAC 2 cut(s) 251, 359
AfeI AGCGCT 1 cut(s) 1617
AfiI CCNNNNNNNGG 4 cut(s) 441, 1175, 1242, 1374
AgsI TTSAA 8 cut(s) 163, 211, 738, 821, 1187, 1447, 1469, 1513
AjnI CCWGG 5 cut(s) 367, 1039, 1092, 1108, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
Alw26I GTCTC 3 cut(s) 213, 278, 1030
AlwI GGATC 2 cut(s) 358, 1412
AlwNI CAGNNNCTG 1 cut(s) 1415
Ama87I CYCGRG 3 cut(s) 268, 440, 860
Aor51HI AGCGCT 1 cut(s) 1617
ApaI GGGCCC 1 cut(s) 1203
ApoI RAATTY 1 cut(s) 1423
Asp700I GAANNNNTTC 1 cut(s) 1464
AspLEI GCGC 1 cut(s) 1618
AspS9I GGNCC 9 cut(s) 4, 371, 1199, 1200, 1233, 1245, 1341, 1365, 1377
AsuC2I CCSGG 7 cut(s) 441, 442, 927, 977, 1014, 1203, 1329
AsuHPI GGTGA 2 cut(s) 626, 1108
AvaI CYCGRG 3 cut(s) 268, 440, 860
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 1203
BanII GRGCYC 3 cut(s) 867, 1134, 1203
BccI CCATC 4 cut(s) 56, 77, 315, 337
BceAI ACGGC 4 cut(s) 62, 74, 447, 1029
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 5 cut(s) 369, 1041, 1094, 1110, 1135
BcnI CCSGG 7 cut(s) 441, 442, 927, 977, 1014, 1203, 1329
BcoDI GTCTC 3 cut(s) 213, 278, 1030
BfaI CTAG 1 cut(s) 1020
BfmI CTRYAG 2 cut(s) 240, 1407
BfoI RGCGCY 1 cut(s) 1619
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 1128
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 3 cut(s) 268, 440, 860
BmgT120I GGNCC 9 cut(s) 4, 371, 1199, 1200, 1233, 1245, 1341, 1365, 1377
BmiI GGNNCC 4 cut(s) 6, 96, 1201, 1326
BmsI GCATC 3 cut(s) 535, 1378, 1400
Bpu1102I GCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 2 cut(s) 305, 359
BpuMI CCSGG 7 cut(s) 441, 442, 927, 977, 1014, 1203, 1329
BsaHI GRCGYC 1 cut(s) 1114
BsaI GGTCTC 1 cut(s) 1030
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 397, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 441, 1175, 1242, 1374
Bse118I RCCGGY 1 cut(s) 1289
Bse1I ACTGG 2 cut(s) 1401, 1461
BseBI CCWGG 5 cut(s) 369, 1041, 1094, 1110, 1135
BseGI GGATG 4 cut(s) 48, 913, 1029, 1393
BseLI CCNNNNNNNGG 4 cut(s) 441, 1175, 1242, 1374
BseMII CTCAG 3 cut(s) 171, 905, 1119
BseNI ACTGG 2 cut(s) 1401, 1461
BseRI GAGGAG 3 cut(s) 6, 387, 1117
BseSI GKGCMC 1 cut(s) 1203
BseX3I CGGCCG 2 cut(s) 460, 928
BseYI CCCAGC 1 cut(s) 612
BsgI GTGCAG 1 cut(s) 1227
Bsh1236I CGCG 1 cut(s) 459
Bsh1285I CGRYCG 2 cut(s) 463, 931
BsiEI CGRYCG 2 cut(s) 463, 931
BsiHKCI CYCGRG 3 cut(s) 268, 440, 860
BsiSI CCGG 9 cut(s) 441, 482, 927, 947, 977, 1013, 1203, 1290, 1328
BslFI GGGAC 3 cut(s) 65, 1101, 1199
BslI CCNNNNNNNGG 4 cut(s) 441, 1175, 1242, 1374
BsmAI GTCTC 3 cut(s) 213, 278, 1030
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 3 cut(s) 65, 1101, 1199
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 3 cut(s) 268, 440, 860
Bsp120I GGGCCC 1 cut(s) 1199
Bsp1286I GDGCHC 3 cut(s) 867, 1134, 1203
Bsp143I GATC 3 cut(s) 363, 380, 1417
Bsp1720I GCTNAGC 1 cut(s) 1128
BspCNI CTCAG 3 cut(s) 172, 904, 1120
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 4 cut(s) 6, 96, 1201, 1326
BspMAI CTGCAG 1 cut(s) 1411
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 358, 1412
BspTNI GGTCTC 1 cut(s) 1030
BsrBI CCGCTC 2 cut(s) 119, 1339
BsrFI RCCGGY 1 cut(s) 1289
BsrI ACTGG 2 cut(s) 1401, 1461
BssAI RCCGGY 1 cut(s) 1289
BssMI GATC 3 cut(s) 363, 380, 1417
BssNI GRCGYC 1 cut(s) 1114
BssT1I CCWWGG 2 cut(s) 1229, 1572
Bst2UI CCWGG 5 cut(s) 369, 1041, 1094, 1110, 1135
Bst4CI ACNGT 4 cut(s) 501, 660, 1066, 1141
Bst6I CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
BstACI GRCGYC 1 cut(s) 1114
BstAPI GCANNNNNTGC 3 cut(s) 547, 956, 1406
BstC8I GCNNGC 5 cut(s) 1291, 1376, 1496, 1566, 1614
BstDEI CTNAG 5 cut(s) 180, 246, 891, 915, 1128
BstDSI CCRYGG 6 cut(s) 90, 451, 457, 903, 1304, 1368
BstF5I GGATG 4 cut(s) 48, 913, 1029, 1393
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 1619
BstHHI GCGC 1 cut(s) 1618
BstKTI GATC 3 cut(s) 366, 383, 1420
BstMAI GTCTC 3 cut(s) 213, 278, 1030
BstMBI GATC 3 cut(s) 363, 380, 1417
BstMCI CGRYCG 2 cut(s) 463, 931
BstNI CCWGG 5 cut(s) 369, 1041, 1094, 1110, 1135
BstSFI CTRYAG 2 cut(s) 240, 1407
BstSLI GKGCMC 1 cut(s) 1203
BstUI CGCG 1 cut(s) 459
BstX2I RGATCY 2 cut(s) 363, 380
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 363, 380
BstZI CGGCCG 2 cut(s) 460, 928
BtgI CCRYGG 6 cut(s) 90, 451, 457, 903, 1304, 1368
BtsCI GGATG 4 cut(s) 48, 913, 1029, 1393
BtsI GCAGTG 2 cut(s) 1300, 1581
BtsIMutI CAGTG 3 cut(s) 1300, 1394, 1581
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 5 cut(s) 1291, 1376, 1496, 1566, 1614
CaiI CAGNNNCTG 1 cut(s) 1415
CfoI GCGC 1 cut(s) 1618
Cfr10I RCCGGY 1 cut(s) 1289
Cfr13I GGNCC 9 cut(s) 4, 371, 1199, 1200, 1233, 1245, 1341, 1365, 1377
Cfr42I CCGCGG 1 cut(s) 460
Cfr9I CCCGGG 1 cut(s) 440
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 250, 358
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 122, 143, 898
CviQI GTAC 2 cut(s) 250, 358
DdeI CTNAG 5 cut(s) 180, 246, 891, 915, 1128
DpnI GATC 3 cut(s) 365, 382, 1419
DpnII GATC 3 cut(s) 363, 380, 1417
DrdI GACNNNNNNGTC 1 cut(s) 1044
DseDI GACNNNNNNGTC 1 cut(s) 1044
EaeI YGGCCR 4 cut(s) 454, 460, 928, 1284
EagI CGGCCG 2 cut(s) 460, 928
Eam1104I CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
EarI CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
EciI GGCGGA 3 cut(s) 49, 64, 381
EclXI CGGCCG 2 cut(s) 460, 928
Eco130I CCWWGG 2 cut(s) 1229, 1572
Eco24I GRGCYC 3 cut(s) 867, 1134, 1203
Eco31I GGTCTC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 1617
Eco52I CGGCCG 2 cut(s) 460, 928
Eco88I CYCGRG 3 cut(s) 268, 440, 860
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 5 cut(s) 367, 1039, 1092, 1108, 1133
EcoT14I CCWWGG 2 cut(s) 1229, 1572
EcoT22I ATGCAT 1 cut(s) 1393
EcoT38I GRGCYC 3 cut(s) 867, 1134, 1203
ErhI CCWWGG 2 cut(s) 1229, 1572
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 3 cut(s) 125, 146, 901
FaqI GGGAC 3 cut(s) 65, 1101, 1199
FatI CATG 3 cut(s) 121, 142, 897
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 1 cut(s) 1153
FblI GTMKAC 2 cut(s) 264, 1312
FokI GGATG 4 cut(s) 35, 920, 1036, 1400
FriOI GRGCYC 3 cut(s) 867, 1134, 1203
FspBI CTAG 1 cut(s) 1020
GlaI GCGC 1 cut(s) 1617
GsaI CCCAGC 1 cut(s) 616
HaeII RGCGCY 1 cut(s) 1619
HapII CCGG 9 cut(s) 441, 482, 927, 947, 977, 1013, 1203, 1290, 1328
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 1618
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 3 cut(s) 125, 146, 901
Hin6I GCGC 1 cut(s) 1616
HinP1I GCGC 1 cut(s) 1616
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 7 cut(s) 22, 271, 301, 318, 410, 565, 685
HpaII CCGG 9 cut(s) 441, 482, 927, 947, 977, 1013, 1203, 1290, 1328
HphI GGTGA 2 cut(s) 626, 1108
Hpy166II GTNNAC 4 cut(s) 265, 300, 1010, 1313
Hpy188I TCNGA 3 cut(s) 21, 385, 564
Hpy188III TCNNGA 5 cut(s) 322, 338, 349, 860, 1510
Hpy8I GTNNAC 4 cut(s) 265, 300, 1010, 1313
HpyAV CCTTC 4 cut(s) 205, 1246, 1378, 1553
HpyCH4III ACNGT 4 cut(s) 501, 660, 1066, 1141
HpyCH4IV ACGT 1 cut(s) 1114
HpyCH4V TGCA 9 cut(s) 203, 404, 550, 1208, 1391, 1409, 1544, 1568, 1601
HpyF3I CTNAG 5 cut(s) 180, 246, 891, 915, 1128
HpySE526I ACGT 1 cut(s) 1114
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 3 cut(s) 125, 146, 901
HspAI GCGC 1 cut(s) 1616
KroI GCCGGC 1 cut(s) 1289
KroNI GCCGGC 1 cut(s) 1291
KspI CCGCGG 1 cut(s) 460
Kzo9I GATC 3 cut(s) 363, 380, 1417
LmnI GCTCC 7 cut(s) 151, 394, 424, 949, 1178, 1336, 1623
LweI GCATC 3 cut(s) 535, 1378, 1400
MaeI CTAG 1 cut(s) 1020
MaeII ACGT 1 cut(s) 1114
MalI GATC 3 cut(s) 365, 382, 1419
MbiI CCGCTC 2 cut(s) 119, 1339
MboI GATC 3 cut(s) 363, 380, 1417
MboII GAAGA 4 cut(s) 1045, 1111, 1266, 1459
MflI RGATCY 2 cut(s) 363, 380
MhlI GDGCHC 3 cut(s) 867, 1134, 1203
MlyI GAGTC 4 cut(s) 280, 295, 312, 404
Mph1103I ATGCAT 1 cut(s) 1393
MroNI GCCGGC 1 cut(s) 1289
MroXI GAANNNNTTC 1 cut(s) 1464
MseI TTAA 3 cut(s) 1349, 1472, 1592
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 459, 1529
MspI CCGG 9 cut(s) 441, 482, 927, 947, 977, 1013, 1203, 1290, 1328
MvaI CCWGG 5 cut(s) 369, 1041, 1094, 1110, 1135
MvnI CGCG 1 cut(s) 459
NaeI GCCGGC 1 cut(s) 1291
NciI CCSGG 7 cut(s) 441, 442, 927, 977, 1014, 1203, 1329
NdeI CATATG 1 cut(s) 1153
NdeII GATC 3 cut(s) 363, 380, 1417
NgoMIV GCCGGC 1 cut(s) 1289
NlaIII CATG 3 cut(s) 125, 146, 901
NlaIV GGNNCC 4 cut(s) 6, 96, 1201, 1326
NmeAIII GCCGAG 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 1393
PdiI GCCGGC 1 cut(s) 1291
PdmI GAANNNNTTC 1 cut(s) 1464
PfeI GAWTC 3 cut(s) 22, 565, 685
PleI GAGTC 4 cut(s) 279, 295, 312, 404
PpsI GAGTC 4 cut(s) 279, 295, 312, 404
Psp6I CCWGG 5 cut(s) 367, 1039, 1092, 1108, 1133
PspFI CCCAGC 1 cut(s) 612
PspGI CCWGG 5 cut(s) 367, 1039, 1092, 1108, 1133
PspN4I GGNNCC 4 cut(s) 6, 96, 1201, 1326
PspOMI GGGCCC 1 cut(s) 1199
PspPI GGNCC 9 cut(s) 4, 371, 1199, 1200, 1233, 1245, 1341, 1365, 1377
PstI CTGCAG 1 cut(s) 1411
PstNI CAGNNNCTG 1 cut(s) 1415
PsuI RGATCY 2 cut(s) 363, 380
PvuII CAGCTG 1 cut(s) 1529
RsaI GTAC 2 cut(s) 251, 359
RsaNI GTAC 2 cut(s) 250, 358
RseI CAYNNNNRTG 1 cut(s) 902
SacII CCGCGG 1 cut(s) 460
SaqAI TTAA 3 cut(s) 1349, 1472, 1592
Sau3AI GATC 3 cut(s) 363, 380, 1417
Sau96I GGNCC 9 cut(s) 4, 371, 1199, 1200, 1233, 1245, 1341, 1365, 1377
SchI GAGTC 4 cut(s) 280, 295, 312, 404
SduI GDGCHC 3 cut(s) 867, 1134, 1203
SfaNI GCATC 3 cut(s) 535, 1378, 1400
SfcI CTRYAG 2 cut(s) 240, 1407
Sfr303I CCGCGG 1 cut(s) 460
SgrBI CCGCGG 1 cut(s) 460
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 320, 338
SmoI CTYRAG 2 cut(s) 320, 338
SspI AATATT 1 cut(s) 1597
SspMI CTAG 1 cut(s) 1020
StyI CCWWGG 2 cut(s) 1229, 1572
TaaI ACNGT 4 cut(s) 501, 660, 1066, 1141
TaiI ACGT 1 cut(s) 1117
TaqI TCGA 3 cut(s) 227, 255, 1070
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 3 cut(s) 22, 565, 685
Tru1I TTAA 3 cut(s) 1349, 1472, 1592
Tru9I TTAA 3 cut(s) 1349, 1472, 1592
TscAI CASTG 3 cut(s) 1300, 1401, 1588
TspDTI ATGAA 1 cut(s) 1533
TspMI CCCGGG 1 cut(s) 440
TspRI CASTG 3 cut(s) 1300, 1401, 1588
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 1423
XmaI CCCGGG 1 cut(s) 440
XmiI GTMKAC 2 cut(s) 264, 1312
XmnI GAANNNNTTC 1 cut(s) 1464
XspI CTAG 1 cut(s) 1020
ZraI GACGTC 1 cut(s) 1115
Zsp2I ATGCAT 1 cut(s) 1393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.