Rorug06G0418100

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009974
Physical Location & Seq
Forward (+)
55723263 .. 55725910
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0418100.1

Sequence Viewer

Length: 1365 bp
ATGGAGGTCGTTTTGGAGAAGAAAGACGCTGCTGAATGGGTGTACAGAGGCGAAGGCGCTGCTAATCTTGTTCTCGCTTACATCGGATCCTCCCCAGCTTTTATCGGGAAAGTAATGCGCATACAGAAGGCGGCGAAAAGGAATGTGTCCGAACGTTCTAGCAGTCCCACAGCACTGAGCATGCATGAACGCCTGGTGTGGAAAGACTTGGAGGACGTAGTAACTTCCTCTAACAGAGAGCTTGCCAGCCAACTATATGTGAAGCACGTCATGACCCCTTTATTGGGTCCAAAGTTTGTTGATTCTGGGATGCGTGTCCATGCTTCTCGGGAATTCTTGGACACAGTGGAGCAGAATGTAAATTGTCAGCGCCCAGCTTCTCGAGTTGATGCTGCTAAAGTTGATACCGAATGTGATTATGTGCTTCTCATGTCTGATCATTCTCTTTTTCCTAGTGGTATTCAAGAAGGCGAAACCTGTATATCTGTAGAGATAAAGCCAAAATGTGGATTTCTCCCAACTTCAAAGTATATAGATGAAGGAAATGCCATCAAACGGAGGATTACTCGTTTTAGGATGCACCAGGCCCTAAAGTTGCGTGATGGAGAGGTATCGGAATATAGTGAATATGATCCACTTGATCTCTTCTCTGGATCGAAGGACAGAATACGTAAAGCTATCAAGGATCTCTTCGCTACCCCACAGAATAATTTCCGGGTATTCTTGAATGGTTCTCTAATATTTGGGGGATTGGGTGGTGGTGCAGCAAGTACCAATTTGGTGATTAGGGATAAAGTTGAAACAGCACTTAAGGGTGTCATTCAGGGAGGTGATGGCTTCCGCACAGTGAACTTTCTACAGCTTGTTGCTGAGACCGTTCATAGATCTGGAGTGATGGATCAGCTTCTGGAGATTCAGAAACTTGATAATATTGACATTGATGGAGCTATCCATGCATATTATGACATTATTTCTGAGCCTTGCATGGTATGTACAGATTTGGGTAAAGAGAAAGCGTCAAACAGATATTCTTCATTGCATTCCCTCTCTTTGGATGAAAGCTTAAAGATTGTGAAGGATTTTTTGATAGCTGCCACTGCAAAGGACTGCAGTTTGATGATTAGTTTTAGACCAAGGAAAGATGGGAGTACAGGATCTCCGTATAATAATGTGTACCTGGAATCAACCAACCAATTTTATGATTACAAGGTGCATTTCATTGACCTGGATCTGAAATCTTTGAAGAAATTGGAAGAATATTATGAGTTGGACAAAAAGATCGTACGCTGCTACAATGAAATGGTGGAAACTAAGGAAAGACTAAATAAAACTACAAGCACCGAGGCTTGTCAAACTGCGGACTGA

Protein Analysis

454

Amino Acids

50.96

Weight (kDa)

6.2

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ins_P5_2-kin PF06090 15 - 426 2.2e-122 Inositol-pentakisphosphate 2-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 506
AciI CCGC 3 cut(s) 131, 841, 1358
AclI AACGTT 1 cut(s) 154
AclWI GGATC 8 cut(s) 81, 94, 626, 661, 693, 906, 1162, 1236
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 6 cut(s) 44, 772, 994, 1150, 1175, 1284
AfiI CCNNNNNNNGG 5 cut(s) 283, 284, 506, 555, 1051
AflII CTTAAG 1 cut(s) 809
AgsI TTSAA 5 cut(s) 464, 525, 727, 800, 1243
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 4 cut(s) 192, 582, 1176, 1224
AluBI AGCT 9 cut(s) 98, 241, 377, 677, 862, 904, 947, 1062, 1091
AluI AGCT 9 cut(s) 98, 241, 377, 677, 862, 904, 947, 1062, 1091
Alw26I GTCTC 1 cut(s) 866
AlwI GGATC 8 cut(s) 81, 94, 626, 661, 693, 906, 1162, 1236
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 2 cut(s) 327, 381
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 6 cut(s) 29, 59, 392, 764, 1091, 1287
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 3 cut(s) 59, 120, 372
AspS9I GGNCC 2 cut(s) 287, 586
AsuC2I CCSGG 1 cut(s) 716
AsuHPI GGTGA 2 cut(s) 793, 842
AvaI CYCGRG 2 cut(s) 327, 381
AvaII GGWCC 1 cut(s) 287
BamHI GGATCC 1 cut(s) 86
BbvI GCAGC 6 cut(s) 16, 46, 379, 776, 1078, 1274
BccI CCATC 6 cut(s) 557, 596, 827, 889, 935, 1136
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 4 cut(s) 194, 584, 1178, 1226
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 716
BcoDI GTCTC 1 cut(s) 866
BfaI CTAG 2 cut(s) 159, 453
BfmI CTRYAG 3 cut(s) 486, 857, 1108
BfoI RGCGCY 2 cut(s) 60, 373
BfrI CTTAAG 1 cut(s) 809
BglII AGATCT 1 cut(s) 884
BisI GCNGC 7 cut(s) 30, 60, 132, 393, 765, 1092, 1288
BlsI GCNGC 7 cut(s) 31, 61, 133, 394, 766, 1093, 1289
Bme1390I CCNGG 5 cut(s) 194, 584, 716, 1178, 1226
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 2 cut(s) 327, 381
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 287, 586
BmiI GGNNCC 2 cut(s) 88, 288
BmrFI CCNGG 5 cut(s) 194, 584, 716, 1178, 1226
BmsI GCATC 3 cut(s) 300, 379, 567
BplI GAGNNNNNCTC 2 cut(s) 550, 582
BpmI CTGGAG 2 cut(s) 909, 929
BpuMI CCSGG 1 cut(s) 716
BsaAI YACGTR 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 1133, 1341
BsaXI ACNNNNNCTCC 2 cut(s) 1141, 1171
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 284, 506, 555, 1051
Bse3DI GCAATG 1 cut(s) 1034
BseBI CCWGG 4 cut(s) 194, 584, 1178, 1226
BseDI CCNNGG 2 cut(s) 1133, 1341
BseGI GGATG 3 cut(s) 315, 582, 1060
BseLI CCNNNNNNNGG 5 cut(s) 283, 284, 506, 555, 1051
BseMI GCAATG 1 cut(s) 1034
BseMII CTCAG 3 cut(s) 167, 861, 966
BseXI GCAGC 6 cut(s) 16, 46, 379, 776, 1078, 1274
BseYI CCCAGC 2 cut(s) 94, 373
BsgI GTGCAG 1 cut(s) 783
BshFI GGCC 1 cut(s) 587
BsiHKCI CYCGRG 2 cut(s) 327, 381
BsiSI CCGG 1 cut(s) 715
BsiWI CGTACG 1 cut(s) 1282
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 5 cut(s) 283, 284, 506, 555, 1051
BsmAI GTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 1039
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 866
BsoBI CYCGRG 2 cut(s) 327, 381
Bsp1407I TGTACA 2 cut(s) 42, 992
BspACI CCGC 3 cut(s) 131, 841, 1358
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 3 cut(s) 168, 862, 967
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 88, 288
BspMAI CTGCAG 1 cut(s) 1112
BspPI GGATC 8 cut(s) 81, 94, 626, 661, 693, 906, 1162, 1236
BspTI CTTAAG 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 866
BsrDI GCAATG 1 cut(s) 1034
BsrGI TGTACA 2 cut(s) 42, 992
BssECI CCNNGG 2 cut(s) 1133, 1341
BssT1I CCWWGG 1 cut(s) 1133
Bst2UI CCWGG 4 cut(s) 194, 584, 1178, 1226
Bst4CI ACNGT 3 cut(s) 346, 847, 877
Bst6I CTCTTC 2 cut(s) 650, 695
BstAFI CTTAAG 1 cut(s) 809
BstAUI TGTACA 2 cut(s) 42, 992
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 182, 243, 247
BstDEI CTNAG 4 cut(s) 176, 870, 975, 1311
BstF5I GGATG 3 cut(s) 315, 582, 1060
BstH2I RGCGCY 2 cut(s) 60, 373
BstHHI GCGC 3 cut(s) 59, 120, 372
BstMAI GTCTC 1 cut(s) 866
BstMWI GCNNNNNNNGC 2 cut(s) 953, 1097
BstNI CCWGG 4 cut(s) 194, 584, 1178, 1226
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 5 cut(s) 192, 582, 714, 1176, 1224
BstSFI CTRYAG 3 cut(s) 486, 857, 1108
BstSNI TACGTA 1 cut(s) 671
BstV1I GCAGC 6 cut(s) 16, 46, 379, 776, 1078, 1274
BstX2I RGATCY 5 cut(s) 86, 685, 884, 1154, 1228
BstYI RGATCY 5 cut(s) 86, 685, 884, 1154, 1228
BsuRI GGCC 1 cut(s) 587
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 3 cut(s) 315, 582, 1060
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 4 cut(s) 173, 351, 852, 1095
Cac8I GCNNGC 3 cut(s) 182, 243, 247
CaiI CAGNNNCTG 1 cut(s) 907
CciI TCATGA 1 cut(s) 270
CfoI GCGC 3 cut(s) 59, 120, 372
Cfr13I GGNCC 2 cut(s) 287, 586
CseI GACGC 2 cut(s) 35, 1005
Csp6I GTAC 6 cut(s) 43, 771, 993, 1149, 1174, 1283
CviAII CATG 7 cut(s) 181, 185, 271, 320, 430, 953, 985
CviQI GTAC 6 cut(s) 43, 771, 993, 1149, 1174, 1283
DdeI CTNAG 4 cut(s) 176, 870, 975, 1311
Eam1104I CTCTTC 2 cut(s) 650, 695
EarI CTCTTC 2 cut(s) 650, 695
Eco105I TACGTA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 327, 381
EcoO109I RGGNCCY 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 4 cut(s) 192, 582, 1176, 1224
EcoT14I CCWWGG 1 cut(s) 1133
EcoT22I ATGCAT 2 cut(s) 186, 958
ErhI CCWWGG 1 cut(s) 1133
FaeI CATG 7 cut(s) 184, 188, 274, 323, 433, 956, 988
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 1 cut(s) 150
FatI CATG 7 cut(s) 180, 184, 270, 319, 429, 952, 984
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 7 cut(s) 30, 60, 132, 393, 765, 1092, 1288
FokI GGATG 3 cut(s) 322, 589, 1067
Fsp4HI GCNGC 7 cut(s) 30, 60, 132, 393, 765, 1092, 1288
FspAI RTGCGCAY 1 cut(s) 119
FspBI CTAG 2 cut(s) 159, 453
FspI TGCGCA 1 cut(s) 119
GlaI GCGC 3 cut(s) 58, 119, 371
GluI GCNGC 7 cut(s) 30, 60, 132, 393, 765, 1092, 1288
GsaI CCCAGC 2 cut(s) 98, 377
GsuI CTGGAG 2 cut(s) 909, 929
HaeII RGCGCY 2 cut(s) 60, 373
HaeIII GGCC 1 cut(s) 587
HapII CCGG 1 cut(s) 715
HgaI GACGC 2 cut(s) 35, 1005
HhaI GCGC 3 cut(s) 59, 120, 372
Hin1II CATG 7 cut(s) 184, 188, 274, 323, 433, 956, 988
Hin6I GCGC 3 cut(s) 57, 118, 370
HinP1I GCGC 3 cut(s) 57, 118, 370
HindIII AAGCTT 1 cut(s) 1060
HinfI GANTC 3 cut(s) 302, 913, 1181
HpaII CCGG 1 cut(s) 715
HphI GGTGA 2 cut(s) 793, 842
Hpy166II GTNNAC 3 cut(s) 43, 850, 1174
Hpy188I TCNGA 7 cut(s) 86, 151, 436, 616, 918, 976, 1233
Hpy188III TCNNGA 9 cut(s) 106, 271, 329, 381, 464, 651, 724, 888, 908
Hpy8I GTNNAC 3 cut(s) 43, 850, 1174
HpyAV CCTTC 6 cut(s) 47, 121, 461, 533, 652, 1069
HpyCH4III ACNGT 3 cut(s) 346, 847, 877
HpyCH4IV ACGT 4 cut(s) 154, 216, 267, 670
HpyCH4V TGCA 9 cut(s) 184, 580, 764, 956, 984, 1039, 1100, 1110, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 953, 1097
HpyF3I CTNAG 4 cut(s) 176, 870, 975, 1311
HpySE526I ACGT 4 cut(s) 154, 216, 267, 670
Hsp92II CATG 7 cut(s) 184, 188, 274, 323, 433, 956, 988
HspAI GCGC 3 cut(s) 57, 118, 370
Ksp22I TGATCA 1 cut(s) 436
LmnI GCTCC 2 cut(s) 349, 944
Lsp1109I GCAGC 6 cut(s) 16, 46, 379, 776, 1078, 1274
LweI GCATC 3 cut(s) 300, 379, 567
MaeI CTAG 2 cut(s) 159, 453
MaeII ACGT 4 cut(s) 154, 216, 267, 670
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 6 cut(s) 31, 637, 682, 1023, 1255, 1265
MflI RGATCY 5 cut(s) 86, 685, 884, 1154, 1228
MluCI AATT 6 cut(s) 332, 361, 709, 775, 1193, 1247
MmeI TCCRAC 1 cut(s) 1248
MnlI CCTC 9 cut(s) 41, 100, 205, 238, 552, 601, 821, 1055, 1336
Mph1103I ATGCAT 2 cut(s) 186, 958
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 2 cut(s) 810, 1064
MspCI CTTAAG 1 cut(s) 809
MspI CCGG 1 cut(s) 715
MspR9I CCNGG 5 cut(s) 194, 584, 716, 1178, 1226
Mva1269I GAATGC 1 cut(s) 1039
MvaI CCWGG 4 cut(s) 194, 584, 1178, 1226
MwoI GCNNNNNNNGC 2 cut(s) 953, 1097
NciI CCSGG 1 cut(s) 716
NlaIII CATG 7 cut(s) 184, 188, 274, 323, 433, 956, 988
NlaIV GGNNCC 2 cut(s) 88, 288
NsbI TGCGCA 1 cut(s) 119
NsiI ATGCAT 2 cut(s) 186, 958
NspI RCATGY 1 cut(s) 184
PaeI GCATGC 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 381
PagI TCATGA 1 cut(s) 270
PctI GAATGC 1 cut(s) 1039
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 3 cut(s) 302, 913, 1181
Pfl23II CGTACG 1 cut(s) 1282
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 7 cut(s) 31, 61, 133, 394, 766, 1093, 1289
Ppu21I YACGTR 1 cut(s) 671
Psp1406I AACGTT 1 cut(s) 154
Psp6I CCWGG 4 cut(s) 192, 582, 1176, 1224
PspFI CCCAGC 2 cut(s) 94, 373
PspGI CCWGG 4 cut(s) 192, 582, 1176, 1224
PspLI CGTACG 1 cut(s) 1282
PspN4I GGNNCC 2 cut(s) 88, 288
PspPI GGNCC 2 cut(s) 287, 586
PstI CTGCAG 1 cut(s) 1112
PstNI CAGNNNCTG 1 cut(s) 907
PsuI RGATCY 5 cut(s) 86, 685, 884, 1154, 1228
RsaI GTAC 6 cut(s) 44, 772, 994, 1150, 1175, 1284
RsaNI GTAC 6 cut(s) 43, 771, 993, 1149, 1174, 1283
SaqAI TTAA 2 cut(s) 810, 1064
SatI GCNGC 7 cut(s) 30, 60, 132, 393, 765, 1092, 1288
Sau96I GGNCC 2 cut(s) 287, 586
ScrFI CCNGG 5 cut(s) 194, 584, 716, 1178, 1226
SfaNI GCATC 3 cut(s) 300, 379, 567
SfcI CTRYAG 3 cut(s) 486, 857, 1108
Sfr274I CTCGAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 381, 809
SmoI CTYRAG 2 cut(s) 381, 809
SnaBI TACGTA 1 cut(s) 671
SphI GCATGC 1 cut(s) 184
Sse9I AATT 6 cut(s) 332, 361, 709, 775, 1193, 1247
SsiI CCGC 3 cut(s) 131, 841, 1358
SspI AATATT 3 cut(s) 741, 931, 1259
SspMI CTAG 2 cut(s) 159, 453
StyD4I CCNGG 5 cut(s) 192, 582, 714, 1176, 1224
StyI CCWWGG 1 cut(s) 1133
TaaI ACNGT 3 cut(s) 346, 847, 877
TaiI ACGT 4 cut(s) 157, 219, 270, 673
TaqI TCGA 2 cut(s) 382, 656
TasI AATT 6 cut(s) 332, 361, 709, 775, 1193, 1247
TatI WGTACW 3 cut(s) 42, 992, 1148
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 302, 913, 1181
Tru1I TTAA 2 cut(s) 810, 1064
Tru9I TTAA 2 cut(s) 810, 1064
TscAI CASTG 4 cut(s) 180, 351, 852, 1102
TseI GCWGC 6 cut(s) 29, 59, 392, 764, 1091, 1287
TspDTI ATGAA 7 cut(s) 201, 552, 869, 1023, 1071, 1207, 1311
TspGWI ACGGA 2 cut(s) 571, 1149
TspRI CASTG 4 cut(s) 180, 351, 852, 1102
Van91I CCANNNNNTGG 1 cut(s) 506
Vha464I CTTAAG 1 cut(s) 809
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 2 cut(s) 159, 453
Zsp2I ATGCAT 2 cut(s) 186, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.