Rmu_sc0002320.1_g000001

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002320.1
OG0009974
Physical Location & Seq
Forward (+)
1541 .. 4038
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002320.1_g000001.1.cds

Sequence Viewer

Length: 1629 bp
atggacccaccacctcctcccaatcccaatccttatccaccgccgcccatccccacctccaccgcccccatctccgccgtcccaaccgccgtggaacctgacaacaacaacaacgccgctcatgtagctgccaaccccactcatgctcctgcccctactttcaaccaccctccttatgctgagatgatatacacagctattgcaacgttgaaggagagagacgggtcgagcaggagagctatagctaagtacatcgagcaggtctacccgagtctcccaccaactcactcggccttgttgactcgccatctcaaacgactcaagaactctggtcatcttgagatggtcaagaagtcctacaagatcccaggccctcccagatctgacgctccgcctcctcctgcaaccgactctcctgctcctgctcctacctctgttgcctctcccgggcagccacgtggccgcggccgtcctccgaagcccaagccggaacagcaacagcagcttatgcagcagcagccgcagttgccacagttgattgtttcccaaccgcagcagcatcagcatcagcatcagcatcagcagcacattttacaacagcccattccgattccgcagcagccaattcccattcctcaacagccaattcccatctctcacccgccatttcccatttctcaacagtcatttcccatttctcaacagccgattcccttttctcaacagccattttccattcctcaacagccgatttcggtttcaattccatttccgattccgattccgcaacagccaattcccattccccaacaacaccccattgtccagcccaattttcaatcttttccacagcccaccctgccgcagcagagctttcccgagcccaattctcagcccatgcccgtggatgagcctaagaagcgacccggccggccacgcaaagctccggcagcccttgccatagggcagaatagtccggttgtgtcagccaagaggggcaggggtcgtccaccgggctctaggatgtcgaagaagagaccaggccgtcctcccaaacccaagactgtttcgagtgtttcgggttctaatgggctggtgaagaggaggccaggacgtccctccaaagctgagcccaggactgtgtttattccatatgctactaatgtgcctataattggagcatttgaacagaccaatgggccgggtgtagtagtcccacaaccagcaccaaggcccagaggtcggcccaagaaggataagtcggctgccgcctcttctggtgtggtggccggcagtggtaagccacggggtagaccgcctctggttccgggggtggagcggcccaagttaagtaggagtgggaggcccgtgggcaggcccaagaaggatgcatcactggcaataactgcagcacctgatccaaatttagctgccaatgctgaattgaagaggaaactggaatacttccaattaagagtgggggaagctgttggcgtgctaaaacctttcttgaacaatgaaagcacagctggtgtcgctgctgcaatccaagaattagaagggcttgcaaccttggacatcactgccccattaaatattgcaactcaacagccagcgctccaaagttga

Protein Analysis

542

Amino Acids

58.29

Weight (kDa)

10.81

Isoelectric Point (pI)

70.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48620 AT3G18035 AT3G18035
fragaria_vesca FvH4_5g17210
malus_domestica MD06G1230400.v1.1 MD14G1235000.v1.1
prunus_persica Prupe.5G231600_v2.0.a1
pyrus_communis pycom06g20160 pycom14g19600
rosa_chinensis RchiOBHm_Chr1g0337641 RchiOBHm_Chr7g0178581
rosa_laevigata RLG00000005435
rosa_multiflora Rmu_sc0002320.1_g000001
rosa_roxburghii Rroxscaffold_3G00274790
rosa_rugosa Rorug06G0418100
rosa_samantha Rh7AG016800 Rh7BG016300 Rh7CG017000 Rh7DG016900 Rh7DG161800
rosa_wichuraiana Rw7G001340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1044
AatII GACGTC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 250
AccBSI CCGCTC 2 cut(s) 119, 1339
AccI GTMKAC 2 cut(s) 264, 1312
AccII CGCG 1 cut(s) 465
AclI AACGTT 1 cut(s) 206
AclWI GGATC 2 cut(s) 358, 1412
AcoI YGGCCR 5 cut(s) 460, 466, 928, 932, 1287
AcsI RAATTY 1 cut(s) 1423
AcvI CACGTG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 1114
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 1617
AfiI CCNNNNNNNGG 4 cut(s) 447, 1175, 1242, 1374
AgsI TTSAA 7 cut(s) 163, 211, 762, 839, 1187, 1447, 1513
AjnI CCWGG 4 cut(s) 367, 1039, 1108, 1133
Alw26I GTCTC 3 cut(s) 213, 278, 1030
AlwI GGATC 2 cut(s) 358, 1412
AlwNI CAGNNNCTG 1 cut(s) 1415
Ama87I CYCGRG 3 cut(s) 268, 446, 878
Aor51HI AGCGCT 1 cut(s) 1617
ApoI RAATTY 1 cut(s) 1423
AspLEI GCGC 1 cut(s) 1618
AspS9I GGNCC 8 cut(s) 4, 371, 1199, 1233, 1245, 1341, 1365, 1377
AsuC2I CCSGG 6 cut(s) 447, 448, 927, 1014, 1203, 1329
AsuHPI GGTGA 2 cut(s) 650, 1108
AvaI CYCGRG 3 cut(s) 268, 446, 878
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 885, 1019, 1134
BbrPI CACGTG 1 cut(s) 458
BccI CCATC 5 cut(s) 56, 77, 315, 337, 659
BceAI ACGGC 4 cut(s) 62, 74, 453, 1029
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 4 cut(s) 369, 1041, 1110, 1135
BcnI CCSGG 6 cut(s) 447, 448, 927, 1014, 1203, 1329
BcoDI GTCTC 3 cut(s) 213, 278, 1030
BfaI CTAG 1 cut(s) 1020
BfmI CTRYAG 2 cut(s) 240, 1407
BfoI RGCGCY 1 cut(s) 1619
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 1128
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 3 cut(s) 268, 446, 878
BmgT120I GGNCC 8 cut(s) 4, 371, 1199, 1233, 1245, 1341, 1365, 1377
BmiI GGNNCC 3 cut(s) 6, 96, 1326
BmsI GCATC 6 cut(s) 568, 574, 580, 586, 1378, 1400
Bpu1102I GCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 2 cut(s) 305, 359
BpuMI CCSGG 6 cut(s) 447, 448, 927, 1014, 1203, 1329
BsaAI YACGTR 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 1114
BsaI GGTCTC 1 cut(s) 1030
BsaWI WCCGGW 1 cut(s) 976
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 397, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 447, 1175, 1242, 1374
Bse118I RCCGGY 2 cut(s) 930, 1289
Bse1I ACTGG 2 cut(s) 1401, 1461
BseBI CCWGG 4 cut(s) 369, 1041, 1110, 1135
BseGI GGATG 4 cut(s) 48, 913, 1029, 1393
BseLI CCNNNNNNNGG 4 cut(s) 447, 1175, 1242, 1374
BseMII CTCAG 3 cut(s) 171, 905, 1119
BseNI ACTGG 2 cut(s) 1401, 1461
BseRI GAGGAG 3 cut(s) 6, 387, 1117
BseX3I CGGCCG 2 cut(s) 466, 928
Bsh1236I CGCG 1 cut(s) 465
Bsh1285I CGRYCG 2 cut(s) 469, 931
BsiEI CGRYCG 2 cut(s) 469, 931
BsiHKCI CYCGRG 3 cut(s) 268, 446, 878
BslFI GGGAC 3 cut(s) 65, 1101, 1199
BslI CCNNNNNNNGG 4 cut(s) 447, 1175, 1242, 1374
BsmAI GTCTC 3 cut(s) 213, 278, 1030
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 3 cut(s) 65, 1101, 1199
Bso31I GGTCTC 1 cut(s) 1030
BsoBI CYCGRG 3 cut(s) 268, 446, 878
Bsp1286I GDGCHC 3 cut(s) 885, 1019, 1134
Bsp143I GATC 3 cut(s) 363, 380, 1417
Bsp1720I GCTNAGC 1 cut(s) 1128
BspCNI CTCAG 3 cut(s) 172, 904, 1120
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 6, 96, 1326
BspMAI CTGCAG 1 cut(s) 1411
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 358, 1412
BspTNI GGTCTC 1 cut(s) 1030
BsrBI CCGCTC 2 cut(s) 119, 1339
BsrFI RCCGGY 2 cut(s) 930, 1289
BsrI ACTGG 2 cut(s) 1401, 1461
BssAI RCCGGY 2 cut(s) 930, 1289
BssMI GATC 3 cut(s) 363, 380, 1417
BssNI GRCGYC 1 cut(s) 1114
BssT1I CCWWGG 2 cut(s) 1229, 1572
Bst2UI CCWGG 4 cut(s) 369, 1041, 1110, 1135
Bst4CI ACNGT 4 cut(s) 534, 684, 1066, 1141
Bst6I CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
BstACI GRCGYC 1 cut(s) 1114
BstAPI GCANNNNNTGC 3 cut(s) 508, 956, 1406
BstBAI YACGTR 1 cut(s) 458
BstC8I GCNNGC 6 cut(s) 932, 1291, 1376, 1496, 1566, 1614
BstDEI CTNAG 5 cut(s) 180, 246, 891, 915, 1128
BstDSI CCRYGG 5 cut(s) 90, 463, 903, 1304, 1368
BstF5I GGATG 4 cut(s) 48, 913, 1029, 1393
BstFNI CGCG 1 cut(s) 465
BstH2I RGCGCY 1 cut(s) 1619
BstHHI GCGC 1 cut(s) 1618
BstKTI GATC 3 cut(s) 366, 383, 1420
BstMAI GTCTC 3 cut(s) 213, 278, 1030
BstMBI GATC 3 cut(s) 363, 380, 1417
BstMCI CGRYCG 2 cut(s) 469, 931
BstNI CCWGG 4 cut(s) 369, 1041, 1110, 1135
BstSFI CTRYAG 2 cut(s) 240, 1407
BstUI CGCG 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 363, 380
BstXI CCANNNNNNTGG 1 cut(s) 904
BstYI RGATCY 2 cut(s) 363, 380
BstZI CGGCCG 2 cut(s) 466, 928
BtgI CCRYGG 5 cut(s) 90, 463, 903, 1304, 1368
BtsCI GGATG 4 cut(s) 48, 913, 1029, 1393
BtsI GCAGTG 2 cut(s) 1300, 1581
BtsIMutI CAGTG 3 cut(s) 1300, 1394, 1581
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 6 cut(s) 932, 1291, 1376, 1496, 1566, 1614
CaiI CAGNNNCTG 1 cut(s) 1415
CfoI GCGC 1 cut(s) 1618
Cfr10I RCCGGY 2 cut(s) 930, 1289
Cfr13I GGNCC 8 cut(s) 4, 371, 1199, 1233, 1245, 1341, 1365, 1377
Cfr42I CCGCGG 1 cut(s) 466
Cfr9I CCCGGG 1 cut(s) 446
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 122, 143, 898
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 5 cut(s) 180, 246, 891, 915, 1128
DpnI GATC 3 cut(s) 365, 382, 1419
DpnII GATC 3 cut(s) 363, 380, 1417
DrdI GACNNNNNNGTC 1 cut(s) 1044
DseDI GACNNNNNNGTC 1 cut(s) 1044
EaeI YGGCCR 5 cut(s) 460, 466, 928, 932, 1287
EagI CGGCCG 2 cut(s) 466, 928
Eam1104I CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
EarI CTCTTC 4 cut(s) 1028, 1094, 1279, 1442
EciI GGCGGA 2 cut(s) 64, 381
EclXI CGGCCG 2 cut(s) 466, 928
Eco130I CCWWGG 2 cut(s) 1229, 1572
Eco24I GRGCYC 3 cut(s) 885, 1019, 1134
Eco31I GGTCTC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 1617
Eco52I CGGCCG 2 cut(s) 466, 928
Eco72I CACGTG 1 cut(s) 458
Eco88I CYCGRG 3 cut(s) 268, 446, 878
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 4 cut(s) 367, 1039, 1108, 1133
EcoT14I CCWWGG 2 cut(s) 1229, 1572
EcoT22I ATGCAT 1 cut(s) 1393
EcoT38I GRGCYC 3 cut(s) 885, 1019, 1134
ErhI CCWWGG 2 cut(s) 1229, 1572
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 3 cut(s) 125, 146, 901
FaqI GGGAC 3 cut(s) 65, 1101, 1199
FatI CATG 3 cut(s) 121, 142, 897
FauI CCCGC 1 cut(s) 669
FauNDI CATATG 1 cut(s) 1153
FblI GTMKAC 2 cut(s) 264, 1312
FokI GGATG 4 cut(s) 35, 920, 1036, 1400
FriOI GRGCYC 3 cut(s) 885, 1019, 1134
FseI GGCCGGCC 1 cut(s) 934
FspBI CTAG 1 cut(s) 1020
GlaI GCGC 1 cut(s) 1617
HaeII RGCGCY 1 cut(s) 1619
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 1618
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 3 cut(s) 125, 146, 901
Hin6I GCGC 1 cut(s) 1616
HinP1I GCGC 1 cut(s) 1616
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 8 cut(s) 271, 301, 318, 410, 610, 709, 775, 781
HphI GGTGA 2 cut(s) 650, 1108
Hpy166II GTNNAC 4 cut(s) 265, 300, 1010, 1313
Hpy188I TCNGA 5 cut(s) 385, 477, 609, 774, 780
Hpy188III TCNNGA 5 cut(s) 322, 338, 349, 878, 1510
Hpy8I GTNNAC 4 cut(s) 265, 300, 1010, 1313
HpyAV CCTTC 4 cut(s) 205, 1246, 1378, 1553
HpyCH4III ACNGT 4 cut(s) 534, 684, 1066, 1141
HpyCH4IV ACGT 3 cut(s) 206, 457, 1114
HpyCH4V TGCA 8 cut(s) 203, 404, 511, 1391, 1409, 1544, 1568, 1601
HpyF3I CTNAG 5 cut(s) 180, 246, 891, 915, 1128
HpySE526I ACGT 3 cut(s) 206, 457, 1114
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 3 cut(s) 125, 146, 901
HspAI GCGC 1 cut(s) 1616
KroI GCCGGC 2 cut(s) 930, 1289
KroNI GCCGGC 2 cut(s) 932, 1291
KspI CCGCGG 1 cut(s) 466
Kzo9I GATC 3 cut(s) 363, 380, 1417
LmnI GCTCC 8 cut(s) 151, 394, 424, 430, 949, 1178, 1336, 1623
LweI GCATC 6 cut(s) 568, 574, 580, 586, 1378, 1400
MaeI CTAG 1 cut(s) 1020
MaeII ACGT 3 cut(s) 206, 457, 1114
MalI GATC 3 cut(s) 365, 382, 1419
MbiI CCGCTC 2 cut(s) 119, 1339
MboI GATC 3 cut(s) 363, 380, 1417
MboII GAAGA 5 cut(s) 1042, 1045, 1111, 1266, 1459
MflI RGATCY 2 cut(s) 363, 380
MhlI GDGCHC 3 cut(s) 885, 1019, 1134
MlyI GAGTC 4 cut(s) 280, 295, 312, 404
Mph1103I ATGCAT 1 cut(s) 1393
MroNI GCCGGC 2 cut(s) 930, 1289
MseI TTAA 3 cut(s) 1349, 1472, 1592
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 465, 1529
MvaI CCWGG 4 cut(s) 369, 1041, 1110, 1135
MvnI CGCG 1 cut(s) 465
NaeI GCCGGC 2 cut(s) 932, 1291
NciI CCSGG 6 cut(s) 447, 448, 927, 1014, 1203, 1329
NdeI CATATG 1 cut(s) 1153
NdeII GATC 3 cut(s) 363, 380, 1417
NgoMIV GCCGGC 2 cut(s) 930, 1289
NlaIII CATG 3 cut(s) 125, 146, 901
NlaIV GGNNCC 3 cut(s) 6, 96, 1326
NmeAIII GCCGAG 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 1393
PdiI GCCGGC 2 cut(s) 932, 1291
PfeI GAWTC 4 cut(s) 610, 709, 775, 781
PleI GAGTC 4 cut(s) 279, 295, 312, 404
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
PpsI GAGTC 4 cut(s) 279, 295, 312, 404
Ppu21I YACGTR 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 206
Psp6I CCWGG 4 cut(s) 367, 1039, 1108, 1133
PspCI CACGTG 1 cut(s) 458
PspGI CCWGG 4 cut(s) 367, 1039, 1108, 1133
PspN4I GGNNCC 3 cut(s) 6, 96, 1326
PspPI GGNCC 8 cut(s) 4, 371, 1199, 1233, 1245, 1341, 1365, 1377
PstI CTGCAG 1 cut(s) 1411
PstNI CAGNNNCTG 1 cut(s) 1415
PsuI RGATCY 2 cut(s) 363, 380
PvuII CAGCTG 1 cut(s) 1529
RigI GGCCGGCC 1 cut(s) 934
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 902
SacII CCGCGG 1 cut(s) 466
SaqAI TTAA 3 cut(s) 1349, 1472, 1592
Sau3AI GATC 3 cut(s) 363, 380, 1417
Sau96I GGNCC 8 cut(s) 4, 371, 1199, 1233, 1245, 1341, 1365, 1377
SchI GAGTC 4 cut(s) 280, 295, 312, 404
SduI GDGCHC 3 cut(s) 885, 1019, 1134
SfaNI GCATC 6 cut(s) 568, 574, 580, 586, 1378, 1400
SfcI CTRYAG 2 cut(s) 240, 1407
Sfr303I CCGCGG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 466
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 320, 338
SmoI CTYRAG 2 cut(s) 320, 338
SspI AATATT 1 cut(s) 1597
SspMI CTAG 1 cut(s) 1020
StyI CCWWGG 2 cut(s) 1229, 1572
TaaI ACNGT 4 cut(s) 534, 684, 1066, 1141
TaiI ACGT 3 cut(s) 209, 460, 1117
TaqI TCGA 4 cut(s) 227, 255, 1028, 1070
TatI WGTACW 1 cut(s) 249
TauI GCSGC 8 cut(s) 46, 119, 465, 468, 523, 865, 1271, 1342
TfiI GAWTC 4 cut(s) 610, 709, 775, 781
Tru1I TTAA 3 cut(s) 1349, 1472, 1592
Tru9I TTAA 3 cut(s) 1349, 1472, 1592
TscAI CASTG 3 cut(s) 1300, 1401, 1588
TspDTI ATGAA 1 cut(s) 1533
TspMI CCCGGG 1 cut(s) 446
TspRI CASTG 3 cut(s) 1300, 1401, 1588
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 1423
XmaI CCCGGG 1 cut(s) 446
XmiI GTMKAC 2 cut(s) 264, 1312
XspI CTAG 1 cut(s) 1020
ZraI GACGTC 1 cut(s) 1115
Zsp2I ATGCAT 1 cut(s) 1393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.