AT1G48970

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18113714 .. 18117833
4120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48970.1

Sequence Viewer

Length: 2001 bp
ATGGATACTCGTCGCGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTTCACATCAATCGAGCCGCCTCCAGAATCATCATTACAACGACCAAATCGAAGCCAATCCGGTCCAGTAGATGCAACCACCTCTTCTTCTCCTCTCTCCGATTCACCTTCCGGTAACTTAATTTCTCCGGTCTTAATTCCACCGTCGCGTCACCATTCCGACAATTTAACCTCTCGCGTTGCTGCTGCTGCTGCTGCTCCTGTGCCCGTCCCTGGACCTGCCGCTTTCCGCCGATACTTAACTCCTGAACGGACTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGACATCATCACCCTCGAGTAACGGAGGGCTTTCTGAGGATTCGGCTTCTCTGTTTGGGTTCCAACGGAGTGATTCGACGAAATTATCAGCAAGCTTACCTAATGGAGGCTTTGATTTGACTCTAGCTGTTAGAGCTCCTCAGGAATCTGAAACCAAAATTGCGACCACGTCTGCTTCTCAAGGGAAAAAGAAGATCGCCGAAGTTTCTGGAAAGAGTGAGTCTGCGACCACAAAACCCCAGAAGGAAAAGGAACCAAAAGCATTGAAAGATAAAACCACTAAAGCAGAAAGACGTGCCATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGGCGTGCAGATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTGCCATAAAGCCCCAACCAAAGAAAGAAAGACTTCCCGTCACGTCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAGAGGATGGATGTCCCTCAGACACAAATGCAGTATGATGATAAAAGCCGAGTGGATAAAGCTAAGAGGCGAGCTGTGGTTGAACAGACCGAGAGCAAGAACAAAGTTGAATTATTTCTCCATCTTCCTCAATACGAACGCAGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTCGATTCCATACACCATGCAGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCTGGGGACAATGCACGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTACAGTACACCTCCTATGAAAGACCTGACCATGGACTTGACAGCCAAGATAAACGGTTATGTTTCATTCTTGATAGAATGTCGTCCCCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTGAAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAATCAGAGGCAAAAAGTTCCCTCTGTTCTGACATTGGCCGGTTCATAGACGAGAAGACAATTATTGCAGATAAGGCAATCGTGCAACACGCCGTAACAAAAATCAGAGACGGAGAAGTTCTTCTTACATATGGATTCTCTTGTGTGGTTGAAATGATTCTCCTATACGCCCATGAGATTGGGAAAAAGTTCCGCGTAGTGATTGTAGACTCACGCCCTAACCTTGAAGGGCAAAAGCTACTCCGTAGACTTGTGACTCGTGGCCTCGACTGTACCTACACTCATATAAATGCCATTTCCTACATCATGCGTGAGGCTACACGTGTTTTTCTCGGTGCTTCATCAATATACTCGAATGGAACTCTTTACGCAAGAGTTGGCACATCCTGCATTGCAATGGTTGCAAACGCATTTAGTGTTCCTGTAATTGTTTGTTGTGAAGCTTACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGCGATCCTGACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACAATGGACAACAACAAAAACCTTCAGTTTCTGAATCTAATGTATGATTCTACTCCTTCAGAATATATATCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGTGAATACAGGAGAGAAAACTTGTTGCTATAA

Protein Analysis

666

Amino Acids

72.96

Weight (kDa)

9.28

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 356 - 649 1.7e-75 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccI GTMKAC 3 cut(s) 1494, 1534, 1954
AccII CGCG 4 cut(s) 15, 202, 231, 1482
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 6 cut(s) 15, 26, 71, 276, 283, 1480
AclWI GGATC 1 cut(s) 1781
AcoI YGGCCR 1 cut(s) 1324
AcuI CTGAAG 3 cut(s) 1271, 1850, 1884
AcvI CACGTG 1 cut(s) 1610
AcyI GRCGYC 1 cut(s) 1794
AfaI GTAC 3 cut(s) 1135, 1561, 1968
AfiI CCNNNNNNNGG 3 cut(s) 266, 458, 1159
AflIII ACRYGT 2 cut(s) 1607, 1609
AgsI TTSAA 8 cut(s) 619, 911, 938, 1112, 1439, 1514, 1764, 1839
AhdI GACNNNNNGTC 1 cut(s) 779
AjiI CACGTC 3 cut(s) 522, 647, 786
AjnI CCWGG 2 cut(s) 265, 733
Alw21I GWGCWC 2 cut(s) 22, 490
Alw26I GTCTC 1 cut(s) 1389
AlwI GGATC 1 cut(s) 1781
AlwNI CAGNNNCTG 1 cut(s) 1873
Ama87I CYCGRG 2 cut(s) 350, 367
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 2 cut(s) 1324, 1549
Asp700I GAANNNNTTC 5 cut(s) 774, 942, 1407, 1443, 1475
AspS9I GGNCC 2 cut(s) 116, 269
AsuHPI GGTGA 3 cut(s) 150, 197, 354
AvaI CYCGRG 2 cut(s) 350, 367
AvaII GGWCC 2 cut(s) 116, 269
AxyI CCTNAGG 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 2 cut(s) 22, 490
BauI CACGAG 1 cut(s) 1545
BbrPI CACGTG 1 cut(s) 1610
BbsI GAAGAC 1 cut(s) 1349
Bbv12I GWGCWC 2 cut(s) 22, 490
BccI CCATC 4 cut(s) 659, 829, 957, 1819
BceAI ACGGC 2 cut(s) 1364, 1781
BciT130I CCWGG 2 cut(s) 267, 735
BcoDI GTCTC 1 cut(s) 1389
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 2 cut(s) 810, 1119
BfuAI ACCTGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 267, 735
Bme18I GGWCC 2 cut(s) 116, 269
BmeRI GACNNNNNGTC 1 cut(s) 779
BmeT110I CYCGRG 2 cut(s) 350, 367
BmgBI CACGTC 3 cut(s) 522, 647, 786
BmgT120I GGNCC 2 cut(s) 116, 269
BmiI GGNNCC 4 cut(s) 30, 413, 606, 1247
BmrFI CCNGG 2 cut(s) 267, 735
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 1349
BpmI CTGGAG 2 cut(s) 60, 1080
BpuEI CTTGAG 1 cut(s) 516
BsaAI YACGTR 2 cut(s) 1610, 1970
BsaHI GRCGYC 1 cut(s) 1794
BsaJI CCNNGG 2 cut(s) 265, 1158
BsaWI WCCGGW 4 cut(s) 113, 164, 181, 337
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 458, 1159
Bse118I RCCGGY 1 cut(s) 1326
Bse1I ACTGG 2 cut(s) 119, 1958
Bse21I CCTNAGG 1 cut(s) 492
Bse3DI GCAATG 2 cut(s) 1677, 1689
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 267, 735
BseDI CCNNGG 2 cut(s) 265, 1158
BseGI GGATG 4 cut(s) 651, 840, 844, 1670
BseLI CCNNNNNNNGG 3 cut(s) 266, 458, 1159
BseMI GCAATG 2 cut(s) 1677, 1689
BseMII CTCAG 3 cut(s) 378, 506, 860
BseNI ACTGG 2 cut(s) 119, 1958
BseRI GAGGAG 2 cut(s) 135, 480
BseSI GKGCMC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 4 cut(s) 15, 202, 231, 1482
BshFI GGCC 2 cut(s) 1326, 1551
BsiHKAI GWGCWC 2 cut(s) 22, 490
BsiHKCI CYCGRG 2 cut(s) 350, 367
BsiSI CCGG 5 cut(s) 114, 165, 182, 338, 1327
BslFI GGGAC 5 cut(s) 248, 367, 827, 1088, 1197
BslI CCNNNNNNNGG 3 cut(s) 266, 458, 1159
BsmAI GTCTC 1 cut(s) 1389
BsmBI CGTCTC 1 cut(s) 1389
BsmFI GGGAC 5 cut(s) 248, 367, 827, 1088, 1197
BsmI GAATGC 1 cut(s) 1834
BsnI GGCC 2 cut(s) 1326, 1551
BsoBI CYCGRG 2 cut(s) 350, 367
Bsp1286I GDGCHC 3 cut(s) 22, 261, 490
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 2 cut(s) 546, 1786
Bsp19I CCATGG 1 cut(s) 1158
BspACI CCGC 6 cut(s) 15, 26, 71, 276, 283, 1480
BspANI GGCC 2 cut(s) 1326, 1551
BspCNI CTCAG 3 cut(s) 379, 505, 859
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 4 cut(s) 15, 202, 231, 1482
BspLI GGNNCC 4 cut(s) 30, 413, 606, 1247
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 1 cut(s) 1781
BsrDI GCAATG 2 cut(s) 1677, 1689
BsrFI RCCGGY 1 cut(s) 1326
BsrI ACTGG 2 cut(s) 119, 1958
BssAI RCCGGY 1 cut(s) 1326
BssECI CCNNGG 2 cut(s) 265, 1158
BssMI GATC 2 cut(s) 546, 1786
BssNAI GTATAC 1 cut(s) 1955
BssNI GRCGYC 1 cut(s) 1794
BssSI CACGAG 1 cut(s) 1545
BssT1I CCWWGG 1 cut(s) 1158
Bst1107I GTATAC 1 cut(s) 1955
Bst2BI CACGAG 1 cut(s) 1545
Bst2UI CCWGG 2 cut(s) 267, 735
Bst4CI ACNGT 4 cut(s) 198, 1133, 1184, 1559
Bst6I CTCTTC 3 cut(s) 142, 315, 824
BstACI GRCGYC 1 cut(s) 1794
BstAPI GCANNNNNTGC 3 cut(s) 680, 1674, 1688
BstBAI YACGTR 2 cut(s) 1610, 1970
BstC8I GCNNGC 4 cut(s) 445, 704, 708, 900
BstDEI CTNAG 4 cut(s) 387, 492, 846, 891
BstDSI CCRYGG 1 cut(s) 1158
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 651, 840, 844, 1670
BstFNI CGCG 4 cut(s) 15, 202, 231, 1482
BstKTI GATC 2 cut(s) 549, 1789
BstMAI GTCTC 1 cut(s) 1389
BstMBI GATC 2 cut(s) 546, 1786
BstNI CCWGG 2 cut(s) 267, 735
BstSCI CCNGG 2 cut(s) 265, 733
BstSFI CTRYAG 2 cut(s) 810, 1119
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 4 cut(s) 15, 202, 231, 1482
BstV2I GAAGAC 1 cut(s) 1349
BstXI CCANNNNNNTGG 2 cut(s) 1228, 1466
BstZ17I GTATAC 1 cut(s) 1955
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 2 cut(s) 1326, 1551
BtgI CCRYGG 1 cut(s) 1158
BtrI CACGTC 3 cut(s) 522, 647, 786
BtsCI GGATG 4 cut(s) 651, 840, 844, 1670
BtsIMutI CAGTG 1 cut(s) 1965
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 4 cut(s) 445, 704, 708, 900
CaiI CAGNNNCTG 1 cut(s) 1873
Cfr10I RCCGGY 1 cut(s) 1326
Cfr13I GGNCC 2 cut(s) 116, 269
CseI GACGC 2 cut(s) 191, 1802
Csp6I GTAC 3 cut(s) 1134, 1560, 1967
CviAII CATG 8 cut(s) 1025, 1096, 1159, 1222, 1228, 1460, 1594, 1742
CviQI GTAC 3 cut(s) 1134, 1560, 1967
DdeI CTNAG 4 cut(s) 387, 492, 846, 891
DpnI GATC 2 cut(s) 548, 1788
DpnII GATC 2 cut(s) 546, 1786
DriI GACNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 1324
Eam1104I CTCTTC 3 cut(s) 142, 315, 824
Eam1105I GACNNNNNGTC 1 cut(s) 779
EarI CTCTTC 3 cut(s) 142, 315, 824
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 2 cut(s) 20, 488
Eco130I CCWWGG 1 cut(s) 1158
Eco24I GRGCYC 2 cut(s) 22, 490
Eco47I GGWCC 2 cut(s) 116, 269
Eco53kI GAGCTC 2 cut(s) 20, 488
Eco57I CTGAAG 3 cut(s) 1271, 1850, 1884
Eco72I CACGTG 1 cut(s) 1610
Eco81I CCTNAGG 1 cut(s) 492
Eco88I CYCGRG 2 cut(s) 350, 367
EcoICRI GAGCTC 2 cut(s) 20, 488
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 265, 733
EcoT14I CCWWGG 1 cut(s) 1158
EcoT38I GRGCYC 2 cut(s) 22, 490
ErhI CCWWGG 1 cut(s) 1158
Esp3I CGTCTC 1 cut(s) 1389
FaeI CATG 8 cut(s) 1028, 1099, 1162, 1225, 1231, 1463, 1597, 1745
FalI AAGNNNNNCTT 4 cut(s) 759, 791, 1395, 1427
FaqI GGGAC 5 cut(s) 248, 367, 827, 1088, 1197
FatI CATG 8 cut(s) 1024, 1095, 1158, 1221, 1227, 1459, 1593, 1741
FauNDI CATATG 1 cut(s) 1417
FblI GTMKAC 3 cut(s) 1494, 1534, 1954
FokI GGATG 4 cut(s) 638, 847, 851, 1657
FriOI GRGCYC 2 cut(s) 22, 490
FspBI CTAG 1 cut(s) 476
GsuI CTGGAG 2 cut(s) 60, 1080
HaeIII GGCC 2 cut(s) 1326, 1551
HapII CCGG 5 cut(s) 114, 165, 182, 338, 1327
HgaI GACGC 2 cut(s) 191, 1802
Hin1I GRCGYC 1 cut(s) 1794
Hin1II CATG 8 cut(s) 1028, 1099, 1162, 1225, 1231, 1463, 1597, 1745
HindIII AAGCTT 2 cut(s) 445, 1728
HpaII CCGG 5 cut(s) 114, 165, 182, 338, 1327
HphI GGTGA 3 cut(s) 150, 197, 354
Hpy166II GTNNAC 5 cut(s) 1136, 1279, 1495, 1535, 1955
Hpy8I GTNNAC 5 cut(s) 1136, 1279, 1495, 1535, 1955
Hpy99I CGWCG 5 cut(s) 15, 45, 202, 433, 1951
HpyAV CCTTC 6 cut(s) 171, 589, 689, 1508, 1874, 1908
HpyCH4III ACNGT 4 cut(s) 198, 1133, 1184, 1559
HpyCH4IV ACGT 6 cut(s) 318, 521, 646, 785, 1609, 1969
HpyF3I CTNAG 4 cut(s) 387, 492, 846, 891
HpySE526I ACGT 6 cut(s) 318, 521, 646, 785, 1609, 1969
Hsp92I GRCGYC 1 cut(s) 1794
Hsp92II CATG 8 cut(s) 1028, 1099, 1162, 1225, 1231, 1463, 1597, 1745
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 546, 1786
LmnI GCTCC 6 cut(s) 17, 256, 493, 998, 1104, 1775
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 476
MaeII ACGT 6 cut(s) 318, 521, 646, 785, 1609, 1969
MaeIII GTNAC 7 cut(s) 167, 203, 326, 371, 781, 1381, 1540
MalI GATC 2 cut(s) 548, 1788
MboI GATC 2 cut(s) 546, 1786
MhlI GDGCHC 3 cut(s) 22, 261, 490
MlyI GAGTC 7 cut(s) 301, 466, 581, 725, 1490, 1537, 1758
MmeI TCCRAC 4 cut(s) 237, 439, 1797, 1970
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 5 cut(s) 774, 942, 1407, 1443, 1475
MseI TTAA 5 cut(s) 173, 188, 221, 293, 989
MslI CAYNNNNRTG 3 cut(s) 1226, 1575, 1682
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 5 cut(s) 114, 165, 182, 338, 1327
MspR9I CCNGG 2 cut(s) 267, 735
Mva1269I GAATGC 1 cut(s) 1834
MvaI CCWGG 2 cut(s) 267, 735
MvnI CGCG 4 cut(s) 15, 202, 231, 1482
NcoI CCATGG 1 cut(s) 1158
NdeI CATATG 1 cut(s) 1417
NdeII GATC 2 cut(s) 546, 1786
NlaIII CATG 8 cut(s) 1028, 1099, 1162, 1225, 1231, 1463, 1597, 1745
NlaIV GGNNCC 4 cut(s) 30, 413, 606, 1247
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 3 cut(s) 203, 781, 1540
PaeR7I CTCGAG 1 cut(s) 367
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 1782
PctI GAATGC 1 cut(s) 1834
PdmI GAANNNNTTC 5 cut(s) 774, 942, 1407, 1443, 1475
PflFI GACNNNGTC 1 cut(s) 520
PleI GAGTC 7 cut(s) 301, 466, 580, 724, 1490, 1537, 1757
PmaCI CACGTG 1 cut(s) 1610
PmlI CACGTG 1 cut(s) 1610
PpsI GAGTC 7 cut(s) 301, 466, 580, 724, 1490, 1537, 1757
Ppu21I YACGTR 2 cut(s) 1610, 1970
Psp124BI GAGCTC 2 cut(s) 22, 490
Psp6I CCWGG 2 cut(s) 265, 733
PspCI CACGTG 1 cut(s) 1610
PspGI CCWGG 2 cut(s) 265, 733
PspN4I GGNNCC 4 cut(s) 30, 413, 606, 1247
PspPI GGNCC 2 cut(s) 116, 269
PspXI VCTCGAGB 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 1873
PsyI GACNNNGTC 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 3 cut(s) 1135, 1561, 1968
RsaNI GTAC 3 cut(s) 1134, 1560, 1967
RseI CAYNNNNRTG 3 cut(s) 1226, 1575, 1682
SacI GAGCTC 2 cut(s) 22, 490
SaqAI TTAA 5 cut(s) 173, 188, 221, 293, 989
Sau3AI GATC 2 cut(s) 546, 1786
Sau96I GGNCC 2 cut(s) 116, 269
SchI GAGTC 7 cut(s) 301, 466, 581, 725, 1490, 1537, 1758
ScrFI CCNGG 2 cut(s) 267, 735
SduI GDGCHC 3 cut(s) 22, 261, 490
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 2 cut(s) 810, 1119
Sfr274I CTCGAG 1 cut(s) 367
SinI GGWCC 2 cut(s) 116, 269
SlaI CTCGAG 1 cut(s) 367
SmiMI CAYNNNNRTG 3 cut(s) 1226, 1575, 1682
SmlI CTYRAG 2 cut(s) 367, 531
SmoI CTYRAG 2 cut(s) 367, 531
SsiI CCGC 6 cut(s) 15, 26, 71, 276, 283, 1480
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 2 cut(s) 22, 490
StyD4I CCNGG 2 cut(s) 265, 733
StyI CCWWGG 1 cut(s) 1158
TaaI ACNGT 4 cut(s) 198, 1133, 1184, 1559
TaiI ACGT 6 cut(s) 321, 524, 649, 788, 1612, 1972
TaqI TCGA 8 cut(s) 43, 66, 103, 368, 428, 1011, 1554, 1640
TaqII GACCGA 1 cut(s) 932
TatI WGTACW 1 cut(s) 1133
TauI GCSGC 2 cut(s) 73, 278
Tru1I TTAA 5 cut(s) 173, 188, 221, 293, 989
Tru9I TTAA 5 cut(s) 173, 188, 221, 293, 989
TscAI CASTG 1 cut(s) 1965
TseFI GTSAC 3 cut(s) 203, 781, 1540
Tsp45I GTSAC 3 cut(s) 203, 781, 1540
TspDTI ATGAA 5 cut(s) 1160, 1182, 1321, 1617, 1758
TspGWI ACGGA 6 cut(s) 29, 319, 390, 433, 1413, 1520
TspRI CASTG 1 cut(s) 1965
Tth111I GACNNNGTC 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 116, 269
XagI CCTNNNNNAGG 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 367
XmiI GTMKAC 3 cut(s) 1494, 1534, 1954
XmnI GAANNNNTTC 5 cut(s) 774, 942, 1407, 1443, 1475
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.