Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Forward (+)

54537143 .. 54551218

Gene Structure 14076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACTCGTTTTTTACGTAATATGATGATGAACGACGAATCCTCTGATGACGAGGATGAAGCAATTATGCTTGCTCTTGTTGAACAATCAATGAAGGAAGACAAGTCCCGCCGCCGACGCGGTTCTGTTGAAGGTCACAGTACTGTCCCACATGATAGAATCGATGGCTCTCGGCTAATTCCTGATCATGTCAAGTCAACCATGCATCCTGCCATTTATGAATTCGGAGTGAAGTATTTGGCTGGGGAAATATCTGGGGGTAATGCTCGCTGTATTGCAATGCTTAGAGCGTTTCAGGGAGCCATTAGAGACTACTCGACACCAACAGACAAAAATCTTGTCCAAGACTTGCCAGCAAAAATTGGTAGCTATGTCTCATTTTTAACTCGGTGCAAGCCACTCTCTATTAGAATGGGAAATGCAATTAGGTTTCTAAAGAGTCATCTTTCCCAAGTGATGGGGTTAAGCCTTTCCGAGTCCGAAACAAAGTTCACACTCTGTCAAGAAATTGACTGTTTTATAAATGATAAGATCATTTTTGCTGATAAGGTGATAGCTAGTCATGCTCCTACAAATATTAGGGATGGGGATGTTCTTCTCACATATGGATATTCAAATGTCGTTGAGATGACCCTTTTACATGGACATGAACTTGGGAAACAGTTTTGTGTTGTGATAGTAGAGTCACGCGCCCCTCAGCAGAAGGCCAATTGCTTCCTAGACTGCAGGCAAAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

246

Amino Acids

27.62

Weight (kDa)

7.07

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	84 - 234	7e-25	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	457
AccII	CGCG	2 cut(s)	120, 690
AciI	CCGC	3 cut(s)	109, 112, 120
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	83, 131, 615
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	369, 557
AluI	AGCT	2 cut(s)	369, 557
Alw26I	GTCTC	2 cut(s)	303, 379
AoxI	GGCC	2 cut(s)	705, 735
ApoI	RAATTY	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
AspLEI	GCGC	1 cut(s)	692
AsuHPI	GGTGA	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	696
BccI	CCATC	3 cut(s)	158, 451, 578
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	303, 379
BfaI	CTAG	2 cut(s)	558, 719
BfmI	CTRYAG	1 cut(s)	724
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmcAI	AGTACT	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	696
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	162
BseGI	GGATG	4 cut(s)	61, 205, 589, 595
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	710
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	120, 690
BshFI	GGCC	2 cut(s)	707, 737
BshVI	ATCGAT	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	91, 131
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	303, 379
BsmFI	GGGAC	2 cut(s)	91, 131
BsnI	GGCC	2 cut(s)	707, 737
Bsp143I	GATC	2 cut(s)	184, 531
BspACI	CCGC	3 cut(s)	109, 112, 120
BspANI	GGCC	2 cut(s)	707, 737
BspCNI	CTCAG	1 cut(s)	709
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	120, 690
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	2 cut(s)	184, 531
Bst4CI	ACNGT	4 cut(s)	140, 145, 515, 663
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	5 cut(s)	72, 268, 354, 395, 728
BstDEI	CTNAG	2 cut(s)	284, 696
BstF5I	GGATG	4 cut(s)	61, 205, 589, 595
BstFNI	CGCG	2 cut(s)	120, 690
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	2 cut(s)	187, 534
BstMAI	GTCTC	2 cut(s)	303, 379
BstMBI	GATC	2 cut(s)	184, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 563
BstSFI	CTRYAG	1 cut(s)	724
BstSNI	TACGTA	1 cut(s)	17
BstUI	CGCG	2 cut(s)	120, 690
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	707, 737
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	61, 205, 589, 595
Cac8I	GCNNGC	5 cut(s)	72, 268, 354, 395, 728
CfoI	GCGC	1 cut(s)	692
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	6 cut(s)	152, 188, 202, 563, 641, 647
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	284, 696
DpnI	GATC	2 cut(s)	186, 533
DpnII	GATC	2 cut(s)	184, 531
Eco105I	TACGTA	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	207
FaeI	CATG	6 cut(s)	155, 191, 205, 566, 644, 650
FaqI	GGGAC	2 cut(s)	91, 131
FatI	CATG	6 cut(s)	151, 187, 201, 562, 640, 646
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	4 cut(s)	68, 192, 596, 602
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	558, 719
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	707, 737
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	6 cut(s)	155, 191, 205, 566, 644, 650
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	6 cut(s)	4, 38, 159, 439, 476, 683
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	198, 492
Hpy188I	TCNGA	4 cut(s)	46, 227, 475, 481
Hpy188III	TCNNGA	2 cut(s)	182, 503
Hpy8I	GTNNAC	2 cut(s)	198, 492
Hpy99I	CGWCG	2 cut(s)	38, 120
HpyAV	CCTTC	3 cut(s)	88, 125, 697
HpyCH4III	ACNGT	4 cut(s)	140, 145, 515, 663
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	205, 278, 393, 422, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 563
HpyF3I	CTNAG	2 cut(s)	284, 696
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	6 cut(s)	155, 191, 205, 566, 644, 650
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 531
LmnI	GCTCC	2 cut(s)	299, 571
LpnPI	CCDG	7 cut(s)	195, 222, 228, 240, 281, 366, 712
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	558, 719
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	134, 684
MalI	GATC	2 cut(s)	186, 533
MboI	GATC	2 cut(s)	184, 531
MboII	GAAGA	2 cut(s)	110, 587
MfeI	CAATTG	1 cut(s)	709
MluCI	AATT	7 cut(s)	63, 177, 221, 360, 423, 507, 709
MlyI	GAGTC	3 cut(s)	448, 485, 692
MnlI	CCTC	3 cut(s)	46, 52, 705
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	2 cut(s)	383, 464
MslI	CAYNNNNRTG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	709
MvnI	CGCG	2 cut(s)	120, 690
MwoI	GCNNNNNNNGC	2 cut(s)	117, 563
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	2 cut(s)	184, 531
NlaIII	CATG	6 cut(s)	155, 191, 205, 566, 644, 650
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	134, 684
NsiI	ATGCAT	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	38, 159
PflMI	CCANNNNNTGG	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	3 cut(s)	447, 484, 691
PpsI	GAGTC	3 cut(s)	447, 484, 691
Ppu21I	YACGTR	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	383, 464
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	184, 531
ScaI	AGTACT	1 cut(s)	142
SchI	GAGTC	3 cut(s)	448, 485, 692
SetI	ASST	6 cut(s)	19, 136, 371, 431, 552, 559
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	17
Sse9I	AATT	7 cut(s)	63, 177, 221, 360, 423, 507, 709
SseBI	AGGCCT	1 cut(s)	737
SsiI	CCGC	3 cut(s)	109, 112, 120
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	2 cut(s)	558, 719
StuI	AGGCCT	1 cut(s)	737
TaaI	ACNGT	4 cut(s)	140, 145, 515, 663
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	162, 317
TasI	AATT	7 cut(s)	63, 177, 221, 360, 423, 507, 709
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	38, 159
Tru1I	TTAA	2 cut(s)	383, 464
Tru9I	TTAA	2 cut(s)	383, 464
TseFI	GTSAC	2 cut(s)	134, 684
Tsp45I	GTSAC	2 cut(s)	134, 684
TspDTI	ATGAA	5 cut(s)	44, 72, 107, 234, 663
Van91I	CCANNNNNTGG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	2 cut(s)	558, 719
ZrmI	AGTACT	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.