Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Forward (+)

50180203 .. 50182791

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGTTCGGGTCCAACAAATCATCTTCGTGTCGTCTTCTTGATTCACGGTGCTCATTCATGTTTGCATATGGCTCTATGGTGTTATATTCAGGCAGTTCCATCGGATATTCACCAAGGATGCGGCGAGAATGGGAGCTTTTCATCCCCTATGTTACACCAACTTGGCAAACAGCTAAGCCAATTGAAGCCAAAAGGCGCCCAGCAGGAGGCTCAATGTTCTACAAAAGCTGCTGCTAGAGCTGATCGGGGAAAGAGACTTGCTCTTCCTGGTAGAGCTGTAAGACAGTCTTCGGAAAAGAAAGAAACTCATGCAATCGCGTCTTCAGATTCAGTGGTTGCTTCTCATTGTACGCAGTTTGATGTTAAAAGCCAAGTAGACAAAAACACAGCTCAACATGAATGCTGCTCTCGGCTAATTACTGATCTTGTCAAGTCAACCATGCATCCTGCCATTTATGAGTTCGGAGTGAAGTATTTGGCTGGGGAAATATCTGGGGGTAATGCTCGCTGTATTGCAATGCTTAGAGCGTTTCAGGGAGCCATTAGAGACTACTCGACACCAACAGACAAAAATCTTGTCGAAGACTTACCAGCAAAAAATATTGGTAGCTATGTCTCATTTTTAACTCGATGCAAGCCACTCTCTATTATAATGGGAAATGCAATTAGGTTTCTAAAGAGTCATCTTTCCCAAGTGATGGGGTTAAGCCTTTCCGAGTCCGAAGCAAAGTTCACACTCTGTCAAGAAATTGACTGTTTTATAAATGACAAGATCATTTTTGCTGATAAGGTGATAGCTAGTCATGCTGCTACAAATATTAGGGATGGGGATGTTCTTCTCACATATGGATATTCGAATGTCGTTGAGATGACCCTTTTACATGCACATGAACTTGGGAAACAGTTTCGTGTTGTGATAGTAGAGTCACGCCCTCAGCAGGAAGGCCAATTGCTTCTTAGACTGCAGGCAAAAGGCCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

328

Amino Acids

35.91

Weight (kDa)

8.82

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	164 - 320	1.7e-30	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	653, 764
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	208, 700, 940
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	8 cut(s)	138, 175, 230, 242, 278, 392, 612, 800
AluI	AGCT	8 cut(s)	138, 175, 230, 242, 278, 392, 612, 800
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	3 cut(s)	250, 543, 622
AoxI	GGCC	2 cut(s)	946, 976
ApeKI	GCWGC	4 cut(s)	230, 233, 405, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	104, 805
AsuII	TTCGAA	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	4 cut(s)	28, 282, 315, 591
Bbv12I	GWGCWC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	4 cut(s)	217, 220, 392, 796
BccI	CCATC	3 cut(s)	109, 694, 821
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	250, 543, 622
BfaI	CTAG	2 cut(s)	237, 801
BfmI	CTRYAG	1 cut(s)	965
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	5 cut(s)	124, 231, 234, 406, 810
BlpI	GCTNAGC	1 cut(s)	176
BlsI	GCNGC	5 cut(s)	125, 232, 235, 407, 811
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	3 cut(s)	12, 199, 541
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	110, 454, 623
BpiI	GAAGAC	4 cut(s)	28, 282, 315, 591
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bpu10I	CCTNAGC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 700, 940
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	5 cut(s)	125, 143, 445, 832, 838
BseLI	CCNNNNNNNGG	3 cut(s)	208, 700, 940
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	950
BseXI	GCAGC	4 cut(s)	217, 220, 392, 796
BseYI	CCCAGC	2 cut(s)	201, 482
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	948, 978
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	208, 700, 940
BsmAI	GTCTC	3 cut(s)	250, 543, 622
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	948, 978
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	244, 424, 774
Bsp1720I	GCTNAGC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	948, 978
BspCNI	CTCAG	1 cut(s)	949
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	12, 199, 541
BspMAI	CTGCAG	1 cut(s)	969
BspQI	GCTCTTC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	244, 424, 774
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	50, 288, 758, 906
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	3 cut(s)	508, 638, 969
BstDEI	CTNAG	4 cut(s)	176, 524, 936, 959
BstF5I	GGATG	5 cut(s)	125, 143, 445, 832, 838
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	247, 427, 777
BstMAI	GTCTC	3 cut(s)	250, 543, 622
BstMBI	GATC	3 cut(s)	244, 424, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 806
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	965
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	4 cut(s)	217, 220, 392, 796
BstV2I	GAAGAC	4 cut(s)	28, 282, 315, 591
BsuRI	GGCC	2 cut(s)	948, 978
BtsCI	GGATG	5 cut(s)	125, 143, 445, 832, 838
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	508, 638, 969
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	11
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	7 cut(s)	60, 311, 398, 442, 806, 884, 890
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	176, 524, 936, 959
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	3 cut(s)	246, 426, 776
DpnII	GATC	3 cut(s)	244, 424, 774
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	978
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	7 cut(s)	63, 314, 401, 445, 809, 887, 893
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FatI	CATG	7 cut(s)	59, 310, 397, 441, 805, 883, 889
FauNDI	CATATG	2 cut(s)	69, 847
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	124, 231, 234, 406, 810
FokI	GGATG	5 cut(s)	130, 132, 432, 839, 845
Fsp4HI	GCNGC	5 cut(s)	124, 231, 234, 406, 810
FspBI	CTAG	2 cut(s)	237, 801
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	5 cut(s)	124, 231, 234, 406, 810
GsaI	CCCAGC	2 cut(s)	205, 486
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	948, 978
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	7 cut(s)	63, 314, 401, 445, 809, 887, 893
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	5 cut(s)	43, 329, 682, 719, 926
HphI	GGTGA	2 cut(s)	104, 805
Hpy166II	GTNNAC	3 cut(s)	379, 438, 735
Hpy188I	TCNGA	6 cut(s)	106, 295, 328, 467, 718, 724
Hpy188III	TCNNGA	2 cut(s)	40, 746
Hpy8I	GTNNAC	3 cut(s)	379, 438, 735
HpyAV	CCTTC	1 cut(s)	938
HpyCH4III	ACNGT	4 cut(s)	50, 288, 758, 906
HpyCH4V	TGCA	8 cut(s)	67, 314, 445, 518, 636, 665, 887, 967
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 806
HpyF3I	CTNAG	4 cut(s)	176, 524, 936, 959
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	7 cut(s)	63, 314, 401, 445, 809, 887, 893
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	244, 424, 774
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	135, 539
Lsp1109I	GCAGC	4 cut(s)	217, 220, 392, 796
LweI	GCATC	3 cut(s)	110, 454, 623
MaeI	CTAG	2 cut(s)	237, 801
MaeIII	GTNAC	2 cut(s)	153, 927
MalI	GATC	3 cut(s)	246, 426, 776
MboI	GATC	3 cut(s)	244, 424, 774
MboII	GAAGA	7 cut(s)	17, 28, 257, 282, 315, 596, 830
MfeI	CAATTG	2 cut(s)	182, 950
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	5 cut(s)	182, 417, 666, 750, 950
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	691, 728, 935
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	202, 945
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	3 cut(s)	366, 626, 707
MslI	CAYNNNNRTG	2 cut(s)	27, 888
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	2 cut(s)	182, 950
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	239, 806
NarI	GGCGCC	1 cut(s)	198
NdeI	CATATG	2 cut(s)	69, 847
NdeII	GATC	3 cut(s)	244, 424, 774
NlaIII	CATG	7 cut(s)	63, 314, 401, 445, 809, 887, 893
NlaIV	GGNNCC	3 cut(s)	12, 199, 541
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	927
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	1 cut(s)	887
NspV	TTCGAA	1 cut(s)	857
PceI	AGGCCT	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	43, 329
PflMI	CCANNNNNTGG	1 cut(s)	700
PkrI	GCNGC	5 cut(s)	125, 232, 235, 407, 811
PleI	GAGTC	3 cut(s)	690, 727, 934
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	3 cut(s)	690, 727, 934
PsiI	TTATAA	2 cut(s)	653, 764
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	201, 482
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	12, 199, 541
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	969
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	27, 888
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	366, 626, 707
SatI	GCNGC	5 cut(s)	124, 231, 234, 406, 810
Sau3AI	GATC	3 cut(s)	244, 424, 774
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	691, 728, 935
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	3 cut(s)	110, 454, 623
SfcI	CTRYAG	1 cut(s)	965
SfoI	GGCGCC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	857
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	27, 888
Sse9I	AATT	5 cut(s)	182, 417, 666, 750, 950
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	1 cut(s)	123
SspDI	GGCGCC	1 cut(s)	197
SspI	AATATT	2 cut(s)	604, 820
SspMI	CTAG	2 cut(s)	237, 801
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	50, 288, 758, 906
TaqI	TCGA	4 cut(s)	557, 582, 631, 857
TasI	AATT	5 cut(s)	182, 417, 666, 750, 950
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	43, 329
Tru1I	TTAA	3 cut(s)	366, 626, 707
Tru9I	TTAA	3 cut(s)	366, 626, 707
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	927
TseI	GCWGC	4 cut(s)	230, 233, 405, 809
Tsp45I	GTSAC	1 cut(s)	927
TspDTI	ATGAA	4 cut(s)	48, 132, 414, 906
TspRI	CASTG	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	887
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	2 cut(s)	237, 801
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.