Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Forward (+)

49041050 .. 49041724

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGGTTAAGCCTTTCCGAGTCCGAAACAAAGTTCACACTCTGTCAAGAAATTGACTGTTTTATAAATGATAAGATCGTTTTTGCTGATAAGGTGATAGCTAGTCATGCTGCTACAAATATTAGGGATGGGGATGTTCTTCTCACATATGGATATTTGAATGTCATTGAGATGACCCTTTTACATGCACATGAACTTGGGAATCAGTTTCGTGTTGTGATAGTAGAGTCACGCCCTCAGCAGGAAGGCCAATTGCTTCTTAGACTGCAGGCAAAAGGCCTGACTTGTACATATACTTGCACAAACGCCCTGTTTACTATCATGCATCAGGTAACAAGAGTATTTCTGGGAGCTGCCTCCGTGTGTTCTAATGGAACGGTGTATTCAGTAGTTGGATCAACATGTGTCGCTAGGGTTGCAAATGCATTTTGCGTTCCAGTCTTTATCTGCTGTGAATCTTATAAGTTTCATGAAAGGGCACAGCTCAATTCAATTTGCTCTAACAAACTAGATGATCCAGATGATATTGCAAAGGTTTCTAGAAGTGATCTGAACTTAAAGTATGATGCTACTCCATCAGATTACATATCTATGATTGTAACAGATTATGGCATGGTTCTACCAACAAGCATGCCTGCGATTGGAGGGATATCGCAGAGAGCACTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

224

Amino Acids

24.58

Weight (kDa)

5.48

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	5 - 207	5.8e-50	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	65, 462
AclWI	GGATC	2 cut(s)	403, 509
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	241, 641
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	160, 492
AluBI	AGCT	3 cut(s)	101, 353, 484
AluI	AGCT	3 cut(s)	101, 353, 484
Alw21I	GWGCWC	1 cut(s)	664
AlwI	GGATC	2 cut(s)	403, 509
AoxI	GGCC	2 cut(s)	247, 277
ApeKI	GCWGC	2 cut(s)	110, 353
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	664
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	97, 340
BccI	CCATC	2 cut(s)	122, 583
BfaI	CTAG	5 cut(s)	102, 411, 509, 540, 673
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	111, 354
BlsI	GCNGC	2 cut(s)	112, 355
BmsI	GCATC	2 cut(s)	334, 556
Bpu10I	CCTNAGC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 641
Bse1I	ACTGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	133, 139
BseLI	CCNNNNNNNGG	2 cut(s)	241, 641
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	97, 340
BshFI	GGCC	2 cut(s)	249, 279
BsiHKAI	GWGCWC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	241, 641
BsnI	GGCC	2 cut(s)	249, 279
Bsp1286I	GDGCHC	2 cut(s)	481, 664
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	75, 395, 514, 547
BspANI	GGCC	2 cut(s)	249, 279
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	403, 509
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	4 cut(s)	75, 395, 514, 547
Bst4CI	ACNGT	2 cut(s)	59, 379
BstAUI	TGTACA	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	270, 632, 636
BstDEI	CTNAG	2 cut(s)	237, 260
BstF5I	GGATG	2 cut(s)	133, 139
BstKTI	GATC	4 cut(s)	78, 398, 517, 550
BstMBI	GATC	4 cut(s)	75, 395, 514, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 416
BstNSI	RCATGY	3 cut(s)	188, 405, 634
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	97, 340
BsuRI	GGCC	2 cut(s)	249, 279
BtsCI	GGATG	2 cut(s)	133, 139
Cac8I	GCNNGC	3 cut(s)	270, 632, 636
CciI	TCATGA	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	8 cut(s)	107, 185, 191, 322, 402, 470, 613, 631
CviJI	RGCY	6 cut(s)	12, 101, 249, 279, 353, 484
CviKI_1	RGCY	6 cut(s)	12, 101, 249, 279, 353, 484
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	237, 260
DpnI	GATC	4 cut(s)	77, 397, 516, 549
DpnII	GATC	4 cut(s)	75, 395, 514, 547
Eco147I	AGGCCT	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	651
EcoRV	GATATC	1 cut(s)	651
EcoT22I	ATGCAT	2 cut(s)	327, 427
FaeI	CATG	8 cut(s)	110, 188, 194, 325, 405, 473, 616, 634
FatI	CATG	8 cut(s)	106, 184, 190, 321, 401, 469, 612, 630
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	111, 354
FokI	GGATG	2 cut(s)	140, 146
Fsp4HI	GCNGC	2 cut(s)	111, 354
FspBI	CTAG	5 cut(s)	102, 411, 509, 540, 673
GluI	GCNGC	2 cut(s)	111, 354
HaeIII	GGCC	2 cut(s)	249, 279
Hin1II	CATG	8 cut(s)	110, 188, 194, 325, 405, 473, 616, 634
HinfI	GANTC	4 cut(s)	20, 202, 227, 455
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	36, 315, 670
Hpy188I	TCNGA	4 cut(s)	19, 25, 552, 580
Hpy188III	TCNNGA	4 cut(s)	47, 470, 518, 540
Hpy8I	GTNNAC	3 cut(s)	36, 315, 670
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	59, 379
HpyCH4V	TGCA	7 cut(s)	188, 268, 300, 325, 419, 425, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 416
HpyF3I	CTNAG	2 cut(s)	237, 260
Hsp92II	CATG	8 cut(s)	110, 188, 194, 325, 405, 473, 616, 634
Kzo9I	GATC	4 cut(s)	75, 395, 514, 547
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	227, 254, 293, 314, 323, 332, 450, 531, 648
Lsp1109I	GCAGC	2 cut(s)	97, 340
LweI	GCATC	2 cut(s)	334, 556
MaeI	CTAG	5 cut(s)	102, 411, 509, 540, 673
MaeIII	GTNAC	3 cut(s)	228, 331, 598
MalI	GATC	4 cut(s)	77, 397, 516, 549
MboI	GATC	4 cut(s)	75, 395, 514, 547
MboII	GAAGA	1 cut(s)	131
MfeI	CAATTG	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	481, 664
MluCI	AATT	4 cut(s)	51, 251, 487, 492
MlyI	GAGTC	2 cut(s)	29, 236
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	3 cut(s)	246, 367, 638
Mph1103I	ATGCAT	2 cut(s)	327, 427
MseI	TTAA	2 cut(s)	8, 557
MslI	CAYNNNNRTG	3 cut(s)	170, 189, 590
MunI	CAATTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	107, 416
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	4 cut(s)	75, 395, 514, 547
NlaIII	CATG	8 cut(s)	110, 188, 194, 325, 405, 473, 616, 634
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	2 cut(s)	327, 427
NspI	RCATGY	3 cut(s)	188, 405, 634
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	279
PciI	ACATGT	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	202, 455
PkrI	GCNGC	2 cut(s)	112, 355
PleI	GAGTC	2 cut(s)	28, 235
PpsI	GAGTC	2 cut(s)	28, 235
PscI	ACATGT	1 cut(s)	401
PsiI	TTATAA	2 cut(s)	65, 462
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	3 cut(s)	170, 189, 590
SaqAI	TTAA	2 cut(s)	8, 557
SatI	GCNGC	2 cut(s)	111, 354
Sau3AI	GATC	4 cut(s)	75, 395, 514, 547
SchI	GAGTC	2 cut(s)	29, 236
SduI	GDGCHC	2 cut(s)	481, 664
SetI	ASST	6 cut(s)	96, 103, 333, 355, 486, 537
SfaNI	GCATC	2 cut(s)	334, 556
SfcI	CTRYAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	170, 189, 590
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	4 cut(s)	51, 251, 487, 492
SseBI	AGGCCT	1 cut(s)	279
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	5 cut(s)	102, 411, 509, 540, 673
StuI	AGGCCT	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	59, 379
TasI	AATT	4 cut(s)	51, 251, 487, 492
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	202, 455
Tru1I	TTAA	2 cut(s)	8, 557
Tru9I	TTAA	2 cut(s)	8, 557
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	110, 353
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	207, 458, 486
TspGWI	ACGGA	1 cut(s)	349
XbaI	TCTAGA	1 cut(s)	539
XceI	RCATGY	3 cut(s)	188, 405, 634
XspI	CTAG	5 cut(s)	102, 411, 509, 540, 673
Zsp2I	ATGCAT	2 cut(s)	327, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.