Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Reverse (-)

15523182 .. 15524559

Gene Structure 1378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGACGCAAAAGCTAAGCCAATTAAAGCCAAAAGGCGTGCCCAGCAGGAGGCTCAATGTGCTACAAAAGCTGCTGCTAGAGCTGATCGGGGAAAGATACTTGCTCTTCCTGGTAGAGCTGTAAGACAGTCTTCGGAAAAGAAAGAAACTCCTGCAATCGCGTCTTCAGATTCAGTGGTTGCTTCTCATTTCAACCATGCATCCTCCATTTATGAGTTCGGAGTGAAGTATTTGGCTGGGGAAATTTCTGGGGGTAATGCTCGCTGTATTTCAATGCTTAGAGCGTTTCAGGGAGACATTAGAGACTACTCGACACCAACAGACAAAAATCTTGTCCAAGACTTACCAACAAAAATTGGTAGCTATGTCTCATTTTTACCTCGGTGCAAGCCACTCTCTATTAGAATGGGAAATGCAATTAGGTTTCTAAAGAGTCATCTTTCCCAAGTGATGGGGTTAAGCCTTTCCGAGTTCGAAACAAAGTTCAGACTCTATCAAGAAATTGACTGTTTTATAAATGATAAGATCATTTTTGCTGATAAGGTAACAAGAGTATTTCTGGGAGCTGCCTCCGTGTGTTCTAATGGAACGGTGTATTCAGTAGTTGGAACAACATGTGTCGCTATGGTTGCAAATGCATTTTGCGTTCCAGTCTTTATCTGCTGTGAATCTTATAAGTTTCATGAAAGGGCACAGCTCAATTCAATTTGCTCTAACAATCTAGGTGATCCAAATGATATTGCAAAGGTTTCTAGAAGTGATCTGAACTTAAAGTATGATGCTACTCCATCAGATTATATATCTATGATTGTAACAGATTATGGCATGGTTCTACCAACAAGCATGCCTGCGATTGTAGGGATATCGCAGAGAGCACTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

296

Amino Acids

32.21

Weight (kDa)

9.11

Isoelectric Point (pI)

25.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	82 - 176	4.4e-08	Initiation factor 2 subunit family
IF-2B	PF01008	180 - 278	1.4e-25	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	515, 675
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccII	CGCG	1 cut(s)	161
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	49, 451
AflIII	ACRYGT	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	193, 273, 705
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	7 cut(s)	14, 71, 83, 119, 363, 566, 697
AluI	AGCT	7 cut(s)	14, 71, 83, 119, 363, 566, 697
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	3 cut(s)	288, 297, 373
AlwI	GGATC	1 cut(s)	722
ApeKI	GCWGC	3 cut(s)	71, 74, 566
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AsuHPI	GGTGA	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	474
BaeGI	GKGCMC	2 cut(s)	43, 694
BbsI	GAAGAC	2 cut(s)	123, 156
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	3 cut(s)	58, 61, 553
BccI	CCATC	2 cut(s)	445, 796
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	288, 297, 373
BfaI	CTAG	4 cut(s)	78, 722, 753, 886
BisI	GCNGC	3 cut(s)	72, 75, 567
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	73, 76, 568
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	209, 769
BpiI	GAAGAC	2 cut(s)	123, 156
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 451
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	49, 451
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	2 cut(s)	43, 694
BseXI	GCAGC	3 cut(s)	58, 61, 553
BseYI	CCCAGC	2 cut(s)	42, 236
Bsh1236I	CGCG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	877
BslI	CCNNNNNNNGG	2 cut(s)	49, 451
BsmAI	GTCTC	3 cut(s)	288, 297, 373
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	3 cut(s)	43, 694, 877
Bsp143I	GATC	4 cut(s)	85, 525, 727, 760
Bsp1720I	GCTNAGC	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	682
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	4 cut(s)	85, 525, 727, 760
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	129, 509, 592
Bst6I	CTCTTC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	5 cut(s)	39, 262, 389, 845, 849
BstDEI	CTNAG	2 cut(s)	15, 278
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	4 cut(s)	88, 528, 730, 763
BstMAI	GTCTC	3 cut(s)	288, 297, 373
BstMBI	GATC	4 cut(s)	85, 525, 727, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 59, 68, 80, 629
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	618, 847
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	2 cut(s)	43, 694
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	58, 61, 553
BstV2I	GAAGAC	2 cut(s)	123, 156
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	5 cut(s)	39, 262, 389, 845, 849
CciI	TCATGA	1 cut(s)	682
CseI	GACGC	2 cut(s)	14, 150
CviAII	CATG	5 cut(s)	197, 615, 683, 826, 844
DdeI	CTNAG	2 cut(s)	15, 278
DpnI	GATC	4 cut(s)	87, 527, 729, 762
DpnII	GATC	4 cut(s)	85, 525, 727, 760
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	864
EcoT22I	ATGCAT	2 cut(s)	202, 640
FaeI	CATG	5 cut(s)	200, 618, 686, 829, 847
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	5 cut(s)	196, 614, 682, 825, 843
Fnu4HI	GCNGC	3 cut(s)	72, 75, 567
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	72, 75, 567
FspBI	CTAG	4 cut(s)	78, 722, 753, 886
GluI	GCNGC	3 cut(s)	72, 75, 567
GsaI	CCCAGC	2 cut(s)	46, 240
HgaI	GACGC	2 cut(s)	14, 150
Hin1II	CATG	5 cut(s)	200, 618, 686, 829, 847
HinfI	GANTC	4 cut(s)	170, 433, 489, 668
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	7 cut(s)	136, 169, 221, 469, 488, 765, 793
Hpy188III	TCNNGA	3 cut(s)	497, 683, 753
Hpy8I	GTNNAC	1 cut(s)	883
HpyCH4III	ACNGT	3 cut(s)	129, 509, 592
HpyCH4V	TGCA	7 cut(s)	155, 200, 387, 416, 632, 638, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 59, 68, 80, 629
HpyF3I	CTNAG	2 cut(s)	15, 278
Hsp92II	CATG	5 cut(s)	200, 618, 686, 829, 847
Kzo9I	GATC	4 cut(s)	85, 525, 727, 760
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	3 cut(s)	58, 61, 553
LweI	GCATC	2 cut(s)	209, 769
MaeI	CTAG	4 cut(s)	78, 722, 753, 886
MaeIII	GTNAC	2 cut(s)	544, 811
MalI	GATC	4 cut(s)	87, 527, 729, 762
MboI	GATC	4 cut(s)	85, 525, 727, 760
MboII	GAAGA	3 cut(s)	98, 123, 156
MhlI	GDGCHC	3 cut(s)	43, 694, 877
MluCI	AATT	7 cut(s)	21, 243, 354, 417, 501, 700, 705
MlyI	GAGTC	2 cut(s)	442, 483
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	4 cut(s)	43, 214, 390, 580
Mph1103I	ATGCAT	2 cut(s)	202, 640
MseI	TTAA	3 cut(s)	24, 458, 770
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	43, 59, 68, 80, 629
NdeII	GATC	4 cut(s)	85, 525, 727, 760
NlaIII	CATG	5 cut(s)	200, 618, 686, 829, 847
NsiI	ATGCAT	2 cut(s)	202, 640
NspI	RCATGY	2 cut(s)	618, 847
NspV	TTCGAA	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	847
PagI	TCATGA	1 cut(s)	682
PciI	ACATGT	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	170, 668
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	73, 76, 568
PleI	GAGTC	2 cut(s)	441, 483
PpsI	GAGTC	2 cut(s)	441, 483
PscI	ACATGT	1 cut(s)	614
PsiI	TTATAA	2 cut(s)	515, 675
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	2 cut(s)	42, 236
PspGI	CCWGG	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	24, 458, 770
SatI	GCNGC	3 cut(s)	72, 75, 567
Sau3AI	GATC	4 cut(s)	85, 525, 727, 760
SchI	GAGTC	2 cut(s)	442, 483
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	3 cut(s)	43, 694, 877
SfaNI	GCATC	2 cut(s)	209, 769
SfuI	TTCGAA	1 cut(s)	474
SphI	GCATGC	1 cut(s)	847
Sse9I	AATT	7 cut(s)	21, 243, 354, 417, 501, 700, 705
SspMI	CTAG	4 cut(s)	78, 722, 753, 886
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	129, 509, 592
TaqI	TCGA	2 cut(s)	311, 474
TasI	AATT	7 cut(s)	21, 243, 354, 417, 501, 700, 705
TfiI	GAWTC	2 cut(s)	170, 668
Tru1I	TTAA	3 cut(s)	24, 458, 770
Tru9I	TTAA	3 cut(s)	24, 458, 770
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	3 cut(s)	71, 74, 566
TspDTI	ATGAA	2 cut(s)	671, 699
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	752
XceI	RCATGY	2 cut(s)	618, 847
XspI	CTAG	4 cut(s)	78, 722, 753, 886
Zsp2I	ATGCAT	2 cut(s)	202, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.