Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Forward (+)

54551257 .. 54551604

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGTCAGGTAATAAGAGTATTTCTGGGAGCTGCCTCTGTGTGTTCTAATGGAACGGTGTATTCAGTAGTTGGAACAACGTGTGTCGCTATGGTTGCAAATGCATTTTGCGTTCCAGTCTTTATCTGCTGTGAATCTTATAAGTTTCATGAAAGGGCACTTTCAATTTGCTCTAACAAACTAGGTGATCCAAATGATATTGCAAAGGTTTCTAGAAGTAATCTGAACTTAAAGTATGATGCTACTCCATCAGATTACATATCTATGATTGTAACAGATTATGGCATGGTTCTACCAACAAGCATGCCTGCGATTGTAGGGATATCGCAGAGAGCACTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

7.56

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	1 - 98	8.8e-24	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AclWI	GGATC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	165
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	256
BfaI	CTAG	3 cut(s)	182, 213, 346
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmsI	GCATC	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	160, 337
Bsp143I	GATC	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	148
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	305, 309
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	305, 309
CciI	TCATGA	1 cut(s)	148
CviAII	CATG	3 cut(s)	149, 286, 304
CviJI	RGCY	1 cut(s)	32
CviKI_1	RGCY	1 cut(s)	32
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	106
FaeI	CATG	3 cut(s)	152, 289, 307
FaiI	YATR	9 cut(s)	92, 141, 150, 237, 260, 266, 282, 287, 305
FatI	CATG	3 cut(s)	148, 285, 303
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	182, 213, 346
GluI	GCNGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	152, 289, 307
HinfI	GANTC	2 cut(s)	4, 134
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	225, 253
Hpy188III	TCNNGA	2 cut(s)	149, 213
Hpy8I	GTNNAC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	98, 104, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	152, 289, 307
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	3 cut(s)	11, 129, 321
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	182, 213, 346
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	160, 337
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	3 cut(s)	152, 289, 307
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	160, 337
SetI	ASST	5 cut(s)	12, 34, 83, 187, 210
SfaNI	GCATC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	165
SspMI	CTAG	3 cut(s)	182, 213, 346
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	83
TasI	AATT	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	137, 165
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	3 cut(s)	182, 213, 346
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.