Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Forward (+)

3318035 .. 3318598

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTTTCCTATATGCCCATGAACTCGGGAAACAGTTTCGTGTTGTGATTGTAGACTCGCGTCCAAAGCTTGAAGGCCAAGCATTACTTCATAGACTGGTAGCAAAGGGCCTGACGTGTACGTATACTCATATAAATGCTGTGTCCTATATCATGCATGAAGTAACACGAGTGTTTCTGGGAGCTGCCTCAGTATTATCTAATGGAACCGTATACTCAAGAGTTGGAACTGCATGTGTTGCTATGGTTGCTCACGCATTTTGCATTCCAGTCTTAGTCTGCTGTGAAGCTTATAAGTTTCATGAAAGAGTACAGCTTGATTCTATTTGCTCTAATGAACTAGGTGATCCAGACGCTGTTGCAAAAGTTTCTGGAAGAACTGATGTAAATTATCTGGAGAATTGGGCGAATAAGGATAATCTGCAACTTCTACTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

147

Amino Acids

16.17

Weight (kDa)

6.99

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	5 - 128	7.2e-39	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccI	GTMKAC	3 cut(s)	54, 125, 213
AccII	CGCG	1 cut(s)	61
AclWI	GGATC	1 cut(s)	341
AfaI	GTAC	2 cut(s)	121, 312
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	74
AjiI	CACGTC	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	70, 185, 290, 316
AluI	AGCT	4 cut(s)	70, 185, 290, 316
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	76, 109
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	208
BoxI	GACNNNNGTC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	102, 269
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	102, 269
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	78, 111
BsiHKCI	CYCGRG	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	78, 111
BsoBI	CYCGRG	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	78, 111
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	102, 269
BssMI	GATC	1 cut(s)	346
BssNAI	GTATAC	2 cut(s)	126, 214
BssSI	CACGAG	1 cut(s)	168
Bst1107I	GTATAC	2 cut(s)	126, 214
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	36, 211
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	190, 274
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 239, 248
BstNSI	RCATGY	1 cut(s)	237
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSNI	TACGTA	1 cut(s)	123
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	2 cut(s)	126, 214
BsuRI	GGCC	2 cut(s)	78, 111
BtrI	CACGTC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	2 cut(s)	50, 362
Csp6I	GTAC	2 cut(s)	120, 311
CviAII	CATG	5 cut(s)	20, 154, 158, 234, 302
CviJI	RGCY	6 cut(s)	70, 78, 111, 185, 290, 316
CviKI_1	RGCY	6 cut(s)	70, 78, 111, 185, 290, 316
CviQI	GTAC	2 cut(s)	120, 311
DdeI	CTNAG	2 cut(s)	190, 274
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	5 cut(s)	23, 157, 161, 237, 305
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	5 cut(s)	19, 153, 157, 233, 301
FblI	GTMKAC	3 cut(s)	54, 125, 213
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	78, 111
HgaI	GACGC	2 cut(s)	50, 362
Hin1II	CATG	5 cut(s)	23, 157, 161, 237, 305
HindIII	AAGCTT	2 cut(s)	68, 288
HinfI	GANTC	2 cut(s)	56, 320
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	4 cut(s)	55, 120, 126, 214
Hpy188III	TCNNGA	6 cut(s)	28, 219, 302, 350, 372, 395
Hpy8I	GTNNAC	4 cut(s)	55, 120, 126, 214
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	36, 211
HpyCH4IV	ACGT	2 cut(s)	116, 122
HpyCH4V	TGCA	5 cut(s)	157, 233, 264, 362, 424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 239, 248
HpyF3I	CTNAG	2 cut(s)	190, 274
HpySE526I	ACGT	2 cut(s)	116, 122
Hsp92II	CATG	5 cut(s)	23, 157, 161, 237, 305
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	83, 125, 164, 282, 357, 363, 380
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	116, 122
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	387
MluCI	AATT	2 cut(s)	388, 400
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	67, 239, 248
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	5 cut(s)	23, 157, 161, 237, 305
NlaIV	GGNNCC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	237
PagI	TCATGA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	123
PshAI	GACNNNNGTC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	121, 312
RsaNI	GTAC	2 cut(s)	120, 311
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	50
SetI	ASST	7 cut(s)	72, 119, 125, 187, 292, 318, 346
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SnaBI	TACGTA	1 cut(s)	123
Sse9I	AATT	2 cut(s)	388, 400
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	36, 211
TaiI	ACGT	2 cut(s)	119, 125
TasI	AATT	2 cut(s)	388, 400
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	6 cut(s)	36, 80, 174, 290, 318, 351
XceI	RCATGY	1 cut(s)	237
XmiI	GTMKAC	3 cut(s)	54, 125, 213
XspI	CTAG	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.