Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007942.1

Orthogroup ID

OG0004613

Physical Location & Seq

Genomic Coordinates Reverse (-)

12092 .. 13209

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007942.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggaagtctattggggcagtaaatctttccggtgggtgcggccggtgaccggaatccggcgaccggaggctcaatgttctacaaaagctgctgctagagctgataggggaaagatacttgctcttcctggtagagctggaagacagtcttcggaaaagaaagaaactcctgcaattgcgtcttcagattcagtggttgattctcattgtacgcagtttgatgttaaaagccaagtagacaaaatcatagctcaacatgaatgcggctctcggctaattcctgatcatgtcaagtcaaccatgcatcctgccatttatgagttcggagtgaagtatttggctggggaaatatctgggggtaatgctcgctgtattgcaatgcttagagcgtttcagggagccattagagactactcgacaccaaaagacaaaaatcttgtccaagacttaccagcaaaaattggtagctatgtctcatttttaactcggtgcaagccactctctattagaatgggaactgcaattaggtttctaaagagtcatctttcccaagtgatggggttaagcctttccgagtcagaaacaaagttcacactctgtcaagaaattgactgttttataaatgataagatcatttttgctgataaggtgatagctagtcatgctgctacaaatattagggatggggatgttcttcttacatatggatattcgaatgtcgttgagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

243

Amino Acids

26.79

Weight (kDa)

9.14

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48970 AT1G48970
fragaria_vesca	FvH4_3g05690 FvH4_5g12800 FvH4_5g12800
malus_domestica	MD06G1210100.v1.1 MD14G1221000.v1.1
prunus_persica	Prupe.5G216300_v2.0.a1
pyrus_communis	pycom06g18780 pycom14g18290
rosa_chinensis	RchiOBHm_Chr4g0426391 RchiOBHm_Chr7g0184441
rosa_laevigata	RLG00000004975 RLG00000007298
rosa_multiflora	Rmu_sc0001557.1_g000016 Rmu_sc0006158.1_g000003 Rmu_sc0006158.1_g000004 Rmu_sc0007942.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269610 Rroxscaffold_5G00368400
rosa_rugosa	Rorug04G0210500
rosa_samantha	Rh3DG253600 Rh4BG273600 Rh4CG287800 Rh4CG287900 Rh4DG270400 Rh7AG079900 Rh7BG067300 Rh7CG067600 Rh7DG067300
rosa_wichuraiana	Rw7G005540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	2 cut(s)	40, 264
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	4 cut(s)	50, 57, 64, 556
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	6 cut(s)	89, 101, 137, 251, 468, 656
AluI	AGCT	6 cut(s)	89, 101, 137, 251, 468, 656
Alw26I	GTCTC	3 cut(s)	402, 478, 719
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	89, 92, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AsuHPI	GGTGA	2 cut(s)	58, 661
AsuII	TTCGAA	1 cut(s)	713
BbsI	GAAGAC	3 cut(s)	141, 148, 174
BbvI	GCAGC	3 cut(s)	76, 79, 652
BccI	CCATC	2 cut(s)	550, 677
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	402, 478, 719
BfaI	CTAG	2 cut(s)	96, 657
BisI	GCNGC	5 cut(s)	41, 90, 93, 265, 666
BlsI	GCNGC	5 cut(s)	42, 91, 94, 266, 667
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	3 cut(s)	141, 148, 174
Bpu14I	TTCGAA	1 cut(s)	713
BsaWI	WCCGGW	3 cut(s)	30, 50, 64
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 57, 64, 556
Bse118I	RCCGGY	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	304, 688, 694
BseLI	CCNNNNNNNGG	4 cut(s)	50, 57, 64, 556
BseMI	GCAATG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	76, 79, 652
BseYI	CCCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	2 cut(s)	44, 65
BshFI	GGCC	1 cut(s)	43
BsiEI	CGRYCG	2 cut(s)	44, 65
BsiSI	CCGG	5 cut(s)	31, 44, 51, 58, 65
BslI	CCNNNNNNNGG	4 cut(s)	50, 57, 64, 556
BsmAI	GTCTC	3 cut(s)	402, 478, 719
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	283, 630
BspACI	CCGC	2 cut(s)	40, 264
BspANI	GGCC	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	2 cut(s)	283, 630
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	147, 614
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	367, 494
BstDEI	CTNAG	1 cut(s)	383
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	304, 688, 694
BstKTI	GATC	2 cut(s)	286, 633
BstMAI	GTCTC	3 cut(s)	402, 478, 719
BstMBI	GATC	2 cut(s)	283, 630
BstMCI	CGRYCG	2 cut(s)	44, 65
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 662
BstNI	CCWGG	1 cut(s)	129
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	76, 79, 652
BstV2I	GAAGAC	3 cut(s)	141, 148, 174
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	304, 688, 694
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	367, 494
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	4 cut(s)	257, 287, 301, 662
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	285, 632
DpnII	GATC	2 cut(s)	283, 630
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	4 cut(s)	260, 290, 304, 665
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FatI	CATG	4 cut(s)	256, 286, 300, 661
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	41, 90, 93, 265, 666
FokI	GGATG	3 cut(s)	291, 695, 701
Fsp4HI	GCNGC	5 cut(s)	41, 90, 93, 265, 666
FspBI	CTAG	2 cut(s)	96, 657
GluI	GCNGC	5 cut(s)	41, 90, 93, 265, 666
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	5 cut(s)	31, 44, 51, 58, 65
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	260, 290, 304, 665
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	5 cut(s)	54, 188, 200, 538, 575
HpaII	CCGG	5 cut(s)	31, 44, 51, 58, 65
HphI	GGTGA	2 cut(s)	58, 661
Hpy166II	GTNNAC	3 cut(s)	238, 297, 591
Hpy188I	TCNGA	5 cut(s)	154, 187, 326, 574, 580
Hpy188III	TCNNGA	2 cut(s)	281, 602
Hpy8I	GTNNAC	3 cut(s)	238, 297, 591
HpyCH4III	ACNGT	2 cut(s)	147, 614
HpyCH4V	TGCA	5 cut(s)	173, 304, 377, 492, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 662
HpyF3I	CTNAG	1 cut(s)	383
Hsp92II	CATG	4 cut(s)	260, 290, 304, 665
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	283, 630
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	3 cut(s)	76, 79, 652
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	96, 657
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	285, 632
MboI	GATC	2 cut(s)	283, 630
MboII	GAAGA	5 cut(s)	116, 141, 153, 174, 686
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	5 cut(s)	174, 276, 459, 522, 606
MlyI	GAGTC	2 cut(s)	547, 584
MnlI	CCTC	1 cut(s)	61
Mph1103I	ATGCAT	1 cut(s)	306
MseI	TTAA	3 cut(s)	225, 482, 563
MspI	CCGG	5 cut(s)	31, 44, 51, 58, 65
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	98, 662
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	2 cut(s)	283, 630
NlaIII	CATG	4 cut(s)	260, 290, 304, 665
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	54, 188, 200
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	42, 91, 94, 266, 667
PleI	GAGTC	2 cut(s)	546, 583
PpsI	GAGTC	2 cut(s)	546, 583
PsiI	TTATAA	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	400
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	225, 482, 563
SatI	GCNGC	5 cut(s)	41, 90, 93, 265, 666
Sau3AI	GATC	2 cut(s)	283, 630
SchI	GAGTC	2 cut(s)	547, 584
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	8 cut(s)	91, 103, 139, 253, 470, 530, 651, 658
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	713
Sse9I	AATT	5 cut(s)	174, 276, 459, 522, 606
SsiI	CCGC	2 cut(s)	40, 264
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	96, 657
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	147, 614
TaqI	TCGA	2 cut(s)	416, 713
TasI	AATT	5 cut(s)	174, 276, 459, 522, 606
TauI	GCSGC	2 cut(s)	43, 267
TfiI	GAWTC	3 cut(s)	54, 188, 200
Tru1I	TTAA	3 cut(s)	225, 482, 563
Tru9I	TTAA	3 cut(s)	225, 482, 563
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	89, 92, 665
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	96, 657
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.