AT1G49400

Ribosomal protein S17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007843
Physical Location & Seq
Forward (+)
18282968 .. 18284202
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49400.1

Sequence Viewer

Length: 351 bp
ATGAAGCCAGTGATAGGCACAGTGGTATCGAACAAGATGCAAAAATCTGTAGTGGTCGCCGTCGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAGTGAAGTTAGATCCATCAAGGCCTTTGAGCAAGAATAAGCATTGGATTGTTGCAGAAATCATCAAAAAAGCTCGAATTTATTCTCCTAAAGCTGCTGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTTCCTCAGCCTCCACTACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

116

Amino Acids

12.56

Weight (kDa)

10.11

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 6 - 73 5.5e-29 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 116, 237
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 233, 254
AluI AGCT 2 cut(s) 233, 254
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 4 cut(s) 254, 257, 260, 263
ApoI RAATTY 2 cut(s) 116, 237
Asp700I GAANNNNTTC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 241, 244, 247, 250
BccI CCATC 2 cut(s) 184, 343
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcoDI GTCTC 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 4 cut(s) 255, 258, 261, 264
BlsI GCNGC 4 cut(s) 256, 259, 262, 265
BmsI GCATC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 306, 332, 338
BseNI ACTGG 1 cut(s) 8
BseXI GCAGC 4 cut(s) 241, 244, 247, 250
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 327
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 157, 172
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 3 cut(s) 305, 331, 337
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 8
BssMI GATC 2 cut(s) 157, 172
BssNI GRCGYC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 2 cut(s) 77, 316
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 3 cut(s) 292, 318, 324
BstKTI GATC 2 cut(s) 160, 175
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 157, 172
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 5 cut(s) 153, 260, 263, 272, 293
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 241, 244, 247, 250
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 15, 27
Cac8I GCNNGC 1 cut(s) 145
CseI GACGC 1 cut(s) 149
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 7, 125, 184, 233, 254, 296
CviKI_1 RGCY 6 cut(s) 7, 125, 184, 233, 254, 296
DdeI CTNAG 3 cut(s) 292, 318, 324
DpnI GATC 2 cut(s) 159, 174
DpnII GATC 2 cut(s) 157, 172
Eam1104I CTCTTC 2 cut(s) 77, 316
EarI CTCTTC 2 cut(s) 77, 316
Eco147I AGGCCT 1 cut(s) 184
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 4 cut(s) 255, 258, 261, 264
Fsp4HI GCNGC 4 cut(s) 255, 258, 261, 264
GluI GCNGC 4 cut(s) 255, 258, 261, 264
HaeIII GGCC 1 cut(s) 184
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 124
HinfI GANTC 3 cut(s) 69, 308, 328
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 2 cut(s) 65, 134
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 40, 147, 215
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 260, 263, 272, 293
HpyF3I CTNAG 3 cut(s) 292, 318, 324
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 157, 172
LpnPI CCDG 2 cut(s) 21, 157
Lsp1109I GCAGC 4 cut(s) 241, 244, 247, 250
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 99
MalI GATC 2 cut(s) 159, 174
MboI GATC 2 cut(s) 157, 172
MboII GAAGA 2 cut(s) 64, 303
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 116, 237
MlyI GAGTC 2 cut(s) 63, 302
MnlI CCTC 3 cut(s) 301, 307, 342
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 1 cut(s) 349
MwoI GCNNNNNNNGC 5 cut(s) 153, 260, 263, 272, 293
NdeII GATC 2 cut(s) 157, 172
NlaIII CATG 1 cut(s) 124
PceI AGGCCT 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 4 cut(s) 256, 259, 262, 265
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 2 cut(s) 63, 302
PpsI GAGTC 2 cut(s) 63, 302
PsuI RGATCY 1 cut(s) 172
PvuI CGATCG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 349
SatI GCNGC 4 cut(s) 255, 258, 261, 264
Sau3AI GATC 2 cut(s) 157, 172
SchI GAGTC 2 cut(s) 63, 302
SetI ASST 3 cut(s) 102, 235, 256
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 48
SgeI CNNG 9 cut(s) 20, 46, 133, 140, 156, 173, 192, 205, 246
Sse9I AATT 2 cut(s) 116, 237
SseBI AGGCCT 1 cut(s) 184
StuI AGGCCT 1 cut(s) 184
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 29, 63, 160, 235
TasI AATT 2 cut(s) 116, 237
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TscAI CASTG 2 cut(s) 15, 27
TseI GCWGC 4 cut(s) 254, 257, 260, 263
TspDTI ATGAA 2 cut(s) 17, 109
TspRI CASTG 2 cut(s) 15, 27
XapI RAATTY 2 cut(s) 116, 237
XmnI GAANNNNTTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.