Rorug07G0289000

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007843
Physical Location & Seq
Forward (+)
28133547 .. 28134842
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0289000.1

Sequence Viewer

Length: 483 bp
ATGTACGTTGACACTGGCGTGAGTACTGGCGTGAGTAATGCTGCCAACTTATTTCGAGCAGACCTGGACGTCTTCGGAGGAAACAAACTGAGATTCTTTGTCTGTAATTTTCATCATATATGCGCCTCTCTTACTTGGATGCACAAGCACTATTTTTGCACTGGTACAGTTAAATGTATCATCGGAAGTGAAGGGAAGGTTCATATTGAAGGAGTCATTACTCATGACGGAGACCGGACTTGTCGTAAACTCATCAACTTGTACCAAATGAAAGTCGACCAGGAACTATGTGCAGCTGGACCATTTACCATCTCTTTTAATCTTCCAGGATCTGTTGATAATCGGCTGTTTTCTCCTGGCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTATGAAATCCAAAATGTCTCGGCAATTCCTCAAGTTCCCTTTTAATGGTAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

160

Amino Acids

17.85

Weight (kDa)

9.11

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AatII GACGTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 276
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 4 cut(s) 5, 25, 166, 263
AfiI CCNNNNNNNGG 2 cut(s) 385, 437
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 5 cut(s) 63, 279, 325, 355, 378
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 225, 414
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 41, 293
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 433, 465
BbsI GAAGAC 2 cut(s) 64, 441
BbvI GCAGC 2 cut(s) 28, 305
BccI CCATC 2 cut(s) 317, 365
BciT130I CCWGG 5 cut(s) 65, 281, 327, 357, 380
BcoDI GTCTC 2 cut(s) 225, 414
BisI GCNGC 2 cut(s) 42, 294
BlsI GCNGC 2 cut(s) 43, 295
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 5 cut(s) 65, 281, 327, 357, 380
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 5 cut(s) 65, 281, 327, 357, 380
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 64, 441
BpuEI CTTGAG 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 437
Bse1I ACTGG 3 cut(s) 19, 31, 166
BseBI CCWGG 5 cut(s) 65, 281, 327, 357, 380
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 385, 437
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 3 cut(s) 19, 31, 166
BseXI GCAGC 2 cut(s) 28, 305
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 385, 437
BsmAI GTCTC 2 cut(s) 225, 414
BsnI GGCC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 329
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 223
BspPI GGATC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 225
BsrI ACTGG 3 cut(s) 19, 31, 166
BssMI GATC 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 5 cut(s) 65, 281, 327, 357, 380
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 2 cut(s) 225, 414
BstMBI GATC 1 cut(s) 329
BstNI CCWGG 5 cut(s) 65, 281, 327, 357, 380
BstSCI CCNGG 5 cut(s) 63, 279, 325, 355, 378
BstV1I GCAGC 2 cut(s) 28, 305
BstV2I GAAGAC 2 cut(s) 64, 441
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 12, 159
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 4, 24, 165, 262
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 296, 346, 360, 367
CviKI_1 RGCY 4 cut(s) 296, 346, 360, 367
CviQI GTAC 4 cut(s) 4, 24, 165, 262
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 299
EcoRII CCWGG 5 cut(s) 63, 279, 325, 355, 378
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 117, 119, 121, 204, 225, 289, 395
FatI CATG 1 cut(s) 223
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 42, 294
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 42, 294
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 42, 294
HaeIII GGCC 1 cut(s) 367
HapII CCGG 1 cut(s) 235
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 10, 277
HindII GTYRAC 2 cut(s) 10, 277
HinfI GANTC 3 cut(s) 93, 213, 375
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 10, 248, 277
Hpy188I TCNGA 3 cut(s) 77, 185, 482
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 3 cut(s) 10, 248, 277
HpyAV CCTTC 3 cut(s) 185, 190, 203
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 6, 69
HpyCH4V TGCA 3 cut(s) 142, 159, 293
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 2 cut(s) 6, 69
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 329
Lsp1109I GCAGC 2 cut(s) 28, 305
LweI GCATC 1 cut(s) 129
MaeII ACGT 2 cut(s) 6, 69
MaeIII GTNAC 2 cut(s) 440, 472
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 3 cut(s) 64, 314, 441
MflI RGATCY 1 cut(s) 329
MluCI AATT 2 cut(s) 106, 416
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 3 cut(s) 71, 136, 431
MseI TTAA 3 cut(s) 171, 318, 435
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 5 cut(s) 65, 281, 327, 357, 380
MvaI CCWGG 5 cut(s) 65, 281, 327, 357, 380
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 17
PagI TCATGA 1 cut(s) 223
PfeI GAWTC 2 cut(s) 93, 375
PfoI TCCNGGA 2 cut(s) 325, 378
PkrI GCNGC 2 cut(s) 43, 295
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp6I CCWGG 5 cut(s) 63, 279, 325, 355, 378
PspGI CCWGG 5 cut(s) 63, 279, 325, 355, 378
PspPI GGNCC 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 4 cut(s) 5, 25, 166, 263
RsaNI GTAC 4 cut(s) 4, 24, 165, 262
RseI CAYNNNNRTG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 171, 318, 435
SatI GCNGC 2 cut(s) 42, 294
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 299
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 5 cut(s) 65, 281, 327, 357, 380
SetI ASST 5 cut(s) 9, 66, 72, 201, 298
SfaNI GCATC 1 cut(s) 129
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 2 cut(s) 106, 416
StyD4I CCNGG 5 cut(s) 63, 279, 325, 355, 378
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 9, 72
TaqI TCGA 2 cut(s) 55, 276
TasI AATT 2 cut(s) 106, 416
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 2 cut(s) 93, 375
Tru1I TTAA 3 cut(s) 171, 318, 435
Tru9I TTAA 3 cut(s) 171, 318, 435
TscAI CASTG 2 cut(s) 19, 166
TseI GCWGC 2 cut(s) 41, 293
TspDTI ATGAA 4 cut(s) 101, 191, 284, 410
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 2 cut(s) 19, 166
VpaK11BI GGWCC 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 276
ZraI GACGTC 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.