MD11G1162200.v1.1

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007843
Physical Location & Seq
Reverse (-)
16392549 .. 16394448
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1162200.v1.1.491

Sequence Viewer

Length: 297 bp
ATGAAGACGGTGGTAGGGATGGTAGTTTCCAATAAGATGCAGAAGTCGGTGGTGGTGGCAGTGGACAGGCTGTTCCATCACAAGCTCTACAACCGATACGTGAAGAGGACCTCCAAGTTCATGGCCCATGATGAGCAGAATCATTGCAACATCGGTGACCGAGTTCGATTGGATCCATCGAGGCCTCTGAGCAAGCGCAAACATTGGGTTGTGGCTGAAATCCTCACCAAAGCACGCATCTACCAGCCTCCTTTACCATCAGATTCACCTCCAGCTTCAACACAGACTACATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

99

Amino Acids

11.25

Weight (kDa)

10.28

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 6 - 73 8.4e-32 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 167, 180
AgsI TTSAA 1 cut(s) 279
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 85, 275
AluI AGCT 2 cut(s) 85, 275
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 2 cut(s) 123, 182
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 108, 124
AsuHPI GGTGA 3 cut(s) 167, 217, 258
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 4 cut(s) 13, 84, 184, 265
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 124
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 2 cut(s) 27, 246
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 179
BshFI GGCC 2 cut(s) 125, 184
BsnI GGCC 2 cut(s) 125, 184
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 2 cut(s) 125, 184
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 167, 180
BsrDI GCAATG 1 cut(s) 142
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 194, 235
BstDEI CTNAG 1 cut(s) 188
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstPI GGTNACC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 2 cut(s) 125, 184
BtsCI GGATG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 194, 235
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 108, 124
CviAII CATG 2 cut(s) 121, 128
CviJI RGCY 7 cut(s) 70, 85, 125, 184, 215, 247, 275
CviKI_1 RGCY 7 cut(s) 70, 85, 125, 184, 215, 247, 275
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 155
FaeI CATG 2 cut(s) 124, 131
FaiI YATR 2 cut(s) 122, 129
FatI CATG 2 cut(s) 120, 127
FokI GGATG 1 cut(s) 31
GlaI GCGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 125, 184
HhaI GCGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 124, 131
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 2 cut(s) 139, 263
HphI GGTGA 3 cut(s) 167, 217, 258
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 189, 262
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 40, 147
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 124, 131
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 52, 257, 285
LweI GCATC 2 cut(s) 27, 246
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 16, 115
MflI RGATCY 1 cut(s) 172
MnlI CCTC 7 cut(s) 99, 121, 174, 195, 233, 258, 279
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 124, 131
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 155
PceI AGGCCT 1 cut(s) 184
PfeI GAWTC 2 cut(s) 139, 263
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 2 cut(s) 108, 124
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 1 cut(s) 172
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 108, 124
SetI ASST 5 cut(s) 87, 102, 113, 271, 277
SfaNI GCATC 2 cut(s) 27, 246
SinI GGWCC 1 cut(s) 108
SseBI AGGCCT 1 cut(s) 184
StuI AGGCCT 1 cut(s) 184
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 166, 179
TaqII GACCGA 1 cut(s) 174
TfiI GAWTC 2 cut(s) 139, 263
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 109
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.