Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093390.1

Orthogroup ID

OG0007843

Physical Location & Seq

Genomic Coordinates Reverse (-)

89 .. 488

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093390.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgaagaatgtggtggggatggtcgtttccaataagatgcagaaatcggtggttgtggcagtggataggctgtttcatcacaagctctacaaccgatatgtgaagaggacatccaagttcatggcccacgatgagcacgatcattgcaacattggagaccgagttcgattggagccttcacgccctttgagcaaacgtaagcattggattgttgctgaaatcctcaccaaagcacgcatttatcagcctccttcaccatcagcttcagctgcagctccactacattctagttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

98

Amino Acids

11.19

Weight (kDa)

10.28

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49400 AT3G18880 AT3G18880
fragaria_vesca	FvH4_5g34540
malus_domestica	MD03G1139600.v1.1 MD11G1162200.v1.1
prunus_persica	Prupe.1G001800_v2.0.a1 Prupe.1G001800_v2.0.a1 Prupe.1G001800_v2.0.a1 Prupe.6G124600_v2.0.a1 Prupe.6G124600_v2.0.a1
pyrus_communis	pycom03g09460 pycom11g13180
rosa_chinensis	RchiOBHm_Chr7g0235191
rosa_laevigata	RLG00000001174
rosa_multiflora	Rmu_co8093390.1_g000001 Rmu_sc0004657.1_g000023
rosa_roxburghii	Rroxscaffold_3G00226190
rosa_rugosa	Rorug07G0289000
rosa_samantha	Rh7AG443500 Rh7BG416200 Rh7CG464700 Rh7DG433000
rosa_wichuraiana	Rw7G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	85, 263, 269, 275
AluI	AGCT	4 cut(s)	85, 263, 269, 275
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	269, 272
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	217, 246
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	256, 284
BccI	CCATC	2 cut(s)	13, 265
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	270, 273
BlsI	GCNGC	2 cut(s)	271, 274
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse3DI	GCAATG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	24, 110
BseMI	GCAATG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	256, 284
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	142
BssMI	GATC	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	24, 110
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 269
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	256, 284
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	24, 110
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	124
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	8 cut(s)	70, 85, 125, 175, 247, 263, 269, 275
CviKI_1	RGCY	8 cut(s)	70, 85, 125, 175, 247, 263, 269, 275
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	249
FaeI	CATG	1 cut(s)	124
FaiI	YATR	2 cut(s)	99, 122
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	270, 273
FokI	GGATG	2 cut(s)	31, 97
Fsp4HI	GCNGC	2 cut(s)	270, 273
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	270, 273
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	217, 246
HpyAV	CCTTC	2 cut(s)	186, 261
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	40, 147, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 269
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	172, 280
Lsp1109I	GCAGC	2 cut(s)	256, 284
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	16, 115
MhlI	GDGCHC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	99, 233, 258
MseI	TTAA	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	189, 269
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	271, 274
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	2 cut(s)	270, 273
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	87, 199, 265, 271, 277
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	270
SgeI	CNNG	8 cut(s)	94, 127, 133, 140, 149, 173, 192, 246
SspMI	CTAG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	166
TaqII	GACCGA	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	2 cut(s)	269, 272
TspDTI	ATGAA	3 cut(s)	17, 65, 109
TspRI	CASTG	1 cut(s)	66
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.