Rh7AG443500

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007843
Physical Location & Seq
Forward (+)
60250887 .. 60253593
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG443500.1

Sequence Viewer

Length: 447 bp
ATGAGAATGATGAAGAGGGATGAAACATTAAACATGAAATCCGCACTCTCATCTCACCTTTTGAGTCGCACTCCGATTGCTTTTGTTGCAGCTTCTCTTCTCCAGGTCGGTCCCAAGGCCGGTGGGTATTCACAATTTTTGCTGAGAAAGATGAAGAATGTGGTGGGGATGGTCGTTTCCAATAAGATGCAGAAATCGGTGGTTGTGGCAGTGGATAGGCTGTTTCATCACAAGCTCTACAACCGATATGTGAAGAGGACATCCAAGTTCATGGCCCATGATGAGCACGATCATTGCAACATTGGAGACCGAGTTCGATTGGAGCCTTCACGCCCTTTGAGCAAACGTAAGCATTGGATTGTTGCTGAAATCCTCACCAAAGCACGCATTTATCAGCCTCCTTCACCATCAGCTTCAGCTGCAGCTCCACTTCATTCTAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

148

Amino Acids

16.72

Weight (kDa)

10.6

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 56 - 123 2.1e-30 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 5 cut(s) 92, 235, 413, 419, 425
AluI AGCT 5 cut(s) 92, 235, 413, 419, 425
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 2 cut(s) 117, 273
ApeKI GCWGC 3 cut(s) 89, 419, 422
AspS9I GGNCC 2 cut(s) 110, 274
AsuHPI GGTGA 3 cut(s) 47, 367, 396
AvaII GGWCC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 101, 406, 434
BccI CCATC 2 cut(s) 163, 415
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 3 cut(s) 90, 420, 423
BlsI GCNGC 3 cut(s) 91, 421, 424
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 274
BmiI GGNNCC 2 cut(s) 112, 324
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 55, 87
BpmI CTGGAG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 25, 174, 260
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 3 cut(s) 101, 406, 434
BshFI GGCC 2 cut(s) 119, 275
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 119, 275
Bso31I GGTCTC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 119, 275
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 112, 324
BspMAI CTGCAG 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 3 cut(s) 8, 102, 248
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 25, 174, 260
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 86, 339, 419
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 101, 406, 434
BstXI CCANNNNNNTGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 119, 275
BtsCI GGATG 3 cut(s) 25, 174, 260
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 110, 274
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 3 cut(s) 34, 271, 278
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 8, 102, 248
EarI CTCTTC 3 cut(s) 8, 102, 248
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 37, 274, 281
FaiI YATR 4 cut(s) 35, 249, 272, 279
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 33, 270, 277
Fnu4HI GCNGC 3 cut(s) 90, 420, 423
FokI GGATG 3 cut(s) 32, 181, 247
Fsp4HI GCNGC 3 cut(s) 90, 420, 423
FspBI CTAG 1 cut(s) 438
GluI GCNGC 3 cut(s) 90, 420, 423
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 119, 275
HapII CCGG 1 cut(s) 120
Hin1II CATG 3 cut(s) 37, 274, 281
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 120
HphI GGTGA 3 cut(s) 47, 367, 396
Hpy188I TCNGA 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 336, 411
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 4 cut(s) 89, 190, 297, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 339, 419
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 3 cut(s) 37, 274, 281
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 322, 430
LpnPI CCDG 3 cut(s) 89, 116, 133
Lsp1109I GCAGC 3 cut(s) 101, 406, 434
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 346
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 4 cut(s) 25, 89, 166, 265
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 4 cut(s) 9, 249, 383, 408
MseI TTAA 2 cut(s) 29, 445
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 86, 339, 419
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 37, 274, 281
NlaIV GGNNCC 2 cut(s) 112, 324
PkrI GCNGC 3 cut(s) 91, 421, 424
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 112, 324
PspPI GGNCC 2 cut(s) 110, 274
PstI CTGCAG 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 419
SaqAI TTAA 2 cut(s) 29, 445
SatI GCNGC 3 cut(s) 90, 420, 423
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 110, 274
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 60, 94, 108, 237, 349, 415, 421, 427
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 110
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 316
TaqII GACCGA 2 cut(s) 98, 324
TasI AATT 1 cut(s) 134
Tru1I TTAA 2 cut(s) 29, 445
Tru9I TTAA 2 cut(s) 29, 445
TscAI CASTG 1 cut(s) 216
TseI GCWGC 3 cut(s) 89, 419, 422
TspDTI ATGAA 7 cut(s) 26, 36, 50, 167, 215, 259, 422
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 110
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.