Rroxscaffold_3G00226190

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007843
Physical Location & Seq
Reverse (-)
9607427 .. 9609697
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226190.1

Sequence Viewer

Length: 297 bp
ATGAAGAATGTGGTGGGGATGGTCGTTTCCAATAAGATGCAGAAATCGGTGGTTGTGGCAGTGGATAGGCTGTTTCATCACAAGCTCTACAACCGATATGTGAAGAGGACATCCAAGTTCATGGCTCACGATGAGCACGATCATTGCAACATTGGAGACCGAGTTCGATTGGAGCCTTCACGCCCTTTGAGCAAACGTAAGCATTGGATTGTTGCTGAAATCCTCACCAAAGCACGCATTTATCAGCCTCCTTCACCATCAGCTTCAGCTGCAGCTCCACTTCATTCTAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

98

Amino Acids

11.19

Weight (kDa)

10.28

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 6 - 73 6.7e-31 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 85, 263, 269, 275
AluI AGCT 4 cut(s) 85, 263, 269, 275
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 269, 272
AsuHPI GGTGA 2 cut(s) 217, 246
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 256, 284
BccI CCATC 2 cut(s) 13, 265
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 270, 273
BlsI GCNGC 2 cut(s) 271, 274
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 2 cut(s) 24, 110
BseMI GCAATG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 256, 284
BsiHKAI GWGCWC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 142
BssMI GATC 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 24, 110
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 189, 269
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 256, 284
BstXI CCANNNNNNTGG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 24, 110
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 235
CviAII CATG 1 cut(s) 121
CviJI RGCY 8 cut(s) 70, 85, 125, 175, 247, 263, 269, 275
CviKI_1 RGCY 8 cut(s) 70, 85, 125, 175, 247, 263, 269, 275
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 249
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 99, 122
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 270, 273
FokI GGATG 2 cut(s) 31, 97
Fsp4HI GCNGC 2 cut(s) 270, 273
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 270, 273
Hin1II CATG 1 cut(s) 124
HphI GGTGA 2 cut(s) 217, 246
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 186, 261
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 40, 147, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 269
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 172, 280
Lsp1109I GCAGC 2 cut(s) 256, 284
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 196
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 16, 115
MhlI GDGCHC 1 cut(s) 138
MnlI CCTC 3 cut(s) 99, 233, 258
MseI TTAA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 189, 269
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PkrI GCNGC 2 cut(s) 271, 274
PspN4I GGNNCC 1 cut(s) 174
PstI CTGCAG 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 270, 273
Sau3AI GATC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 87, 199, 265, 271, 277
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 270
SgeI CNNG 8 cut(s) 94, 127, 133, 140, 149, 173, 192, 246
SspMI CTAG 1 cut(s) 288
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 1 cut(s) 174
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 1 cut(s) 66
TseI GCWGC 2 cut(s) 269, 272
TspDTI ATGAA 4 cut(s) 17, 65, 109, 272
TspRI CASTG 1 cut(s) 66
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.