RLG00000001174

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007843
Physical Location & Seq
Reverse (-)
11347844 .. 11348294
451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001174

Sequence Viewer

Length: 348 bp
ATGCAGGTCGGTCCCAAGGCCAGTGGGTATTCACAATTTTTGCTGAGAAAGATGAAGAATGTGGTGGGGATGGTCGTTTCCAATAAGATGCAGAAATCGGTGGTTGTGGCAGTGGATAGGCTGTTTCATCACAAGCTCTACAACCGATATGTGAAGAGGACATCCAAGTTCATGGCCCACGATGAGCACGATCATTGCAACATTGGAGACCGAGTTCGATTGGAGCCTTCACGCCCTTTGAGCAAACGTAAGCATTGGATTGTTGCTGAAATCCTCACCAAAGCACGCATTTATCAGCCTCCTTCACCATCAGCTTCAGCTGCAGCTCCACTTCATTCTAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

10.41

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 23 - 90 1.1e-30 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 300
AloI GAACNNNNNNTCC 2 cut(s) 198, 230
AluBI AGCT 4 cut(s) 136, 314, 320, 326
AluI AGCT 4 cut(s) 136, 314, 320, 326
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 2 cut(s) 18, 174
ApeKI GCWGC 2 cut(s) 320, 323
AspS9I GGNCC 2 cut(s) 11, 175
AsuHPI GGTGA 2 cut(s) 268, 297
AvaII GGWCC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 307, 335
BccI CCATC 2 cut(s) 64, 316
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 321, 324
BlsI GCNGC 2 cut(s) 322, 325
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 175
BmiI GGNNCC 2 cut(s) 13, 225
BmsI GCATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 75, 161
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 307, 335
BshFI GGCC 2 cut(s) 20, 176
BsiHKAI GWGCWC 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 2 cut(s) 20, 176
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 2 cut(s) 20, 176
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 13, 225
BspMAI CTGCAG 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 75, 161
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 240, 320
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 307, 335
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 20, 176
BtsCI GGATG 2 cut(s) 75, 161
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 28, 117
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 11, 175
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 1 cut(s) 172
CviJI RGCY 9 cut(s) 20, 121, 136, 176, 226, 298, 314, 320, 326
CviKI_1 RGCY 9 cut(s) 20, 121, 136, 176, 226, 298, 314, 320, 326
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 150, 173
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 321, 324
FokI GGATG 2 cut(s) 82, 148
Fsp4HI GCNGC 2 cut(s) 321, 324
FspBI CTAG 1 cut(s) 339
GluI GCNGC 2 cut(s) 321, 324
HaeIII GGCC 2 cut(s) 20, 176
Hin1II CATG 1 cut(s) 175
HphI GGTGA 2 cut(s) 268, 297
HpyAV CCTTC 2 cut(s) 237, 312
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 4, 91, 198, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 320
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 223, 331
LpnPI CCDG 1 cut(s) 34
Lsp1109I GCAGC 2 cut(s) 307, 335
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 247
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 67, 166
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 35
MnlI CCTC 3 cut(s) 150, 284, 309
MseI TTAA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 240, 320
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 13, 225
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 2 cut(s) 322, 325
PspN4I GGNNCC 2 cut(s) 13, 225
PspPI GGNCC 2 cut(s) 11, 175
PstI CTGCAG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 2 cut(s) 321, 324
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 11, 175
SduI GDGCHC 1 cut(s) 189
SetI ASST 6 cut(s) 9, 138, 250, 316, 322, 328
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 11
Sse9I AATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 15
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 217
TaqII GACCGA 1 cut(s) 225
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TscAI CASTG 2 cut(s) 28, 117
TseI GCWGC 2 cut(s) 320, 323
TspDTI ATGAA 4 cut(s) 68, 116, 160, 323
TspRI CASTG 2 cut(s) 28, 117
VpaK11BI GGWCC 1 cut(s) 11
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.