Rh7DG433000

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007843
Physical Location & Seq
Forward (+)
61576911 .. 61578148
1238 bp
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UTR
Exon/CDS
Intron
Rh7DG433000.1

Sequence Viewer

Length: 411 bp
ATGTCTCCACTCTCATCTCACCTTTTGAGTCGCACACCGATTGCTTTTGTTGCAGCTTCTCTTCTGCAGGTCGGTCCCAAGGCCGGTGGGTATTCACAATTTTTGCTGAGAAAGATGAAGAATGTGGTGGGGATGGTCGTTTCCAATAAGATGCAGAAATCGGTGGTTGTGGCAGTGGATAGGCTGTTTCATCACAAGCTCTACAACCGATATGTGAAGAGGACATCCAAGTTCATGGCCCACGATGAGCACGATCATTGCAACATTGGAGACCGAGTTCGATTGGAGCCTTCACGCCCTTTGAGCAAACGTAAGCATTGGATTGTTGCTGAAATCCTCACCAAAGCACGCATTTATCAGCCTCCTTCACCATCAGCTTCAGCTGCAGCTCCACTACATTCTAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

136

Amino Acids

15.21

Weight (kDa)

10.55

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 44 - 111 1.7e-30 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 5 cut(s) 56, 199, 377, 383, 389
AluI AGCT 5 cut(s) 56, 199, 377, 383, 389
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 9, 264
AoxI GGCC 2 cut(s) 81, 237
ApeKI GCWGC 3 cut(s) 53, 383, 386
AspS9I GGNCC 2 cut(s) 74, 238
AsuHPI GGTGA 3 cut(s) 11, 331, 360
AvaII GGWCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 65, 370, 398
BccI CCATC 2 cut(s) 127, 379
BcoDI GTCTC 2 cut(s) 9, 264
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 2 cut(s) 65, 384
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 3 cut(s) 54, 384, 387
BlsI GCNGC 3 cut(s) 55, 385, 388
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 238
BmiI GGNNCC 2 cut(s) 76, 288
BmsI GCATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 138, 224
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 65, 370, 398
BshFI GGCC 2 cut(s) 83, 239
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 9, 264
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 83, 239
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 253
BspANI GGCC 2 cut(s) 83, 239
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 76, 288
BspMAI CTGCAG 2 cut(s) 69, 388
BspMI ACCTGC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 66, 212
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 138, 224
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 9, 264
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 50, 303, 383
BstSFI CTRYAG 2 cut(s) 65, 384
BstV1I GCAGC 3 cut(s) 65, 370, 398
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 83, 239
BtsCI GGATG 2 cut(s) 138, 224
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 74, 238
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 1 cut(s) 235
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 66, 212
EarI CTCTTC 2 cut(s) 66, 212
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 213, 236
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 54, 384, 387
FokI GGATG 2 cut(s) 145, 211
Fsp4HI GCNGC 3 cut(s) 54, 384, 387
FspBI CTAG 1 cut(s) 402
GluI GCNGC 3 cut(s) 54, 384, 387
HaeIII GGCC 2 cut(s) 83, 239
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 238
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 11, 331, 360
HpyAV CCTTC 2 cut(s) 300, 375
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 53, 67, 154, 261, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 303, 383
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 2 cut(s) 286, 394
LpnPI CCDG 2 cut(s) 53, 97
Lsp1109I GCAGC 3 cut(s) 65, 370, 398
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 310
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 53, 130, 229
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 3 cut(s) 213, 347, 372
MseI TTAA 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 50, 303, 383
NdeII GATC 1 cut(s) 253
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 76, 288
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PkrI GCNGC 3 cut(s) 55, 385, 388
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 76, 288
PspPI GGNCC 2 cut(s) 74, 238
PstI CTGCAG 2 cut(s) 69, 388
PvuII CAGCTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 3 cut(s) 54, 384, 387
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 2 cut(s) 74, 238
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 24, 58, 72, 201, 313, 379, 385, 391
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 2 cut(s) 65, 384
SinI GGWCC 1 cut(s) 74
Sse9I AATT 1 cut(s) 98
SspMI CTAG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 280
TaqII GACCGA 2 cut(s) 62, 288
TasI AATT 1 cut(s) 98
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 180
TseI GCWGC 3 cut(s) 53, 383, 386
TspDTI ATGAA 3 cut(s) 131, 179, 223
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 74
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.