Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004657.1

Orthogroup ID

OG0007843

Physical Location & Seq

Genomic Coordinates Forward (+)

118809 .. 119259

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004657.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgcaggtcggtcccaaggccggtgggtattcacaatttttgctgagaaagatgaagaatgtggtggggatggtcgtttccaataagatgcagaaatcggtggttgtggcagtggataggctgtttcatcacaagctctacaaccgatatgtgaagaggacatccaagttcatggcccacgatgagcacgatcattgcaacattggagaccgagttcgattggagccttcacgccctttgagcaaacgtaagcattggattgttgctgaaatcctcaccaaagcacgcatttatcagcctccttcaccatcagcttcagctgcagctccactacattctagttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

10.41

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49400 AT3G18880 AT3G18880
fragaria_vesca	FvH4_5g34540
malus_domestica	MD03G1139600.v1.1 MD11G1162200.v1.1
prunus_persica	Prupe.1G001800_v2.0.a1 Prupe.1G001800_v2.0.a1 Prupe.1G001800_v2.0.a1 Prupe.6G124600_v2.0.a1 Prupe.6G124600_v2.0.a1
pyrus_communis	pycom03g09460 pycom11g13180
rosa_chinensis	RchiOBHm_Chr7g0235191
rosa_laevigata	RLG00000001174
rosa_multiflora	Rmu_co8093390.1_g000001 Rmu_sc0004657.1_g000023
rosa_roxburghii	Rroxscaffold_3G00226190
rosa_rugosa	Rorug07G0289000
rosa_samantha	Rh7AG443500 Rh7BG416200 Rh7CG464700 Rh7DG433000
rosa_wichuraiana	Rw7G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	20
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	4 cut(s)	136, 314, 320, 326
AluI	AGCT	4 cut(s)	136, 314, 320, 326
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	18, 174
ApeKI	GCWGC	2 cut(s)	320, 323
AspS9I	GGNCC	2 cut(s)	11, 175
AsuHPI	GGTGA	2 cut(s)	268, 297
AvaII	GGWCC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	307, 335
BccI	CCATC	2 cut(s)	64, 316
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	321, 324
BlsI	GCNGC	2 cut(s)	322, 325
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 175
BmiI	GGNNCC	2 cut(s)	13, 225
BmsI	GCATC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	75, 161
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	307, 335
BshFI	GGCC	2 cut(s)	20, 176
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	20, 176
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	2 cut(s)	20, 176
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	13, 225
BspMAI	CTGCAG	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	75, 161
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 320
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	307, 335
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	20, 176
BtsCI	GGATG	2 cut(s)	75, 161
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	11, 175
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	9 cut(s)	20, 121, 136, 176, 226, 298, 314, 320, 326
CviKI_1	RGCY	9 cut(s)	20, 121, 136, 176, 226, 298, 314, 320, 326
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	175
FaiI	YATR	2 cut(s)	150, 173
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	321, 324
FokI	GGATG	2 cut(s)	82, 148
Fsp4HI	GCNGC	2 cut(s)	321, 324
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	321, 324
HaeIII	GGCC	2 cut(s)	20, 176
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	175
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	268, 297
HpyAV	CCTTC	2 cut(s)	237, 312
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	4, 91, 198, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 320
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	223, 331
LpnPI	CCDG	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	307, 335
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	247
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	67, 166
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	3 cut(s)	150, 284, 309
MseI	TTAA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	240, 320
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	13, 225
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	322, 325
PspN4I	GGNNCC	2 cut(s)	13, 225
PspPI	GGNCC	2 cut(s)	11, 175
PstI	CTGCAG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	2 cut(s)	321, 324
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	11, 175
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	9, 138, 250, 316, 322, 328
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	35
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	2 cut(s)	320, 323
TspDTI	ATGAA	3 cut(s)	68, 116, 160
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	11
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.