Rh7CG464700

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007843
Physical Location & Seq
Forward (+)
62077791 .. 62079693
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG464700.1

Sequence Viewer

Length: 360 bp
ATGAGAATGATGAAGAGGGATGAAACATTAAACATGAAAGTAAAGACTTCGAAAACTTCTTATTCTGGACATGTCTCCACTCTCATCTCACCTTTTGAGTCGCACTCCGATTGCTTTTGTTGCAGCTACTCTTCTGCAGGTCGGTCCCAAGGCGGGTGGGTATTCACATTTTTGCTGAGAAAGATGAAGAATGTGGTGGGGATGGTCGTTTCCAATAAGATGCAGAAATCGGTGGTTGTGGCAGTGGATAGGCTGTTTCATCACAAGCTCTACAACCGATATGTGAAGAGGACATCCAAGTTCATGGCCCACGATGAGCACGATCATTGCAACATTGGAGACCGAATTCCAACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

119

Amino Acids

13.73

Weight (kDa)

9.66

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 67 - 116 2e-20 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 153
AflIII ACRYGT 1 cut(s) 70
AluBI AGCT 2 cut(s) 126, 268
AluI AGCT 2 cut(s) 126, 268
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 79, 333
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 345
AspS9I GGNCC 2 cut(s) 144, 307
AsuHPI GGTGA 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 79, 333
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 144, 307
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 3 cut(s) 25, 207, 293
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 321
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 79, 333
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 128
BspT104I TTCGAA 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 148
Bst6I CTCTTC 3 cut(s) 8, 136, 281
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 25, 207, 293
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 2 cut(s) 79, 333
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 304
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 3 cut(s) 25, 207, 293
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 144, 307
CspCI CAANNNNNGTGG 2 cut(s) 137, 172
CviAII CATG 3 cut(s) 34, 71, 304
CviJI RGCY 4 cut(s) 126, 253, 268, 308
CviKI_1 RGCY 4 cut(s) 126, 253, 268, 308
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 8, 136, 281
EarI CTCTTC 3 cut(s) 8, 136, 281
Eco130I CCWWGG 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 37, 74, 307
FaiI YATR 4 cut(s) 35, 72, 282, 305
FaqI GGGAC 1 cut(s) 130
FatI CATG 3 cut(s) 33, 70, 303
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 3 cut(s) 32, 214, 280
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 308
Hin1II CATG 3 cut(s) 37, 74, 307
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 123, 137, 223, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 3 cut(s) 37, 74, 307
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 2 cut(s) 51, 123
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 210
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 25, 123, 199, 298
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 345
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 2 cut(s) 9, 282
MseI TTAA 2 cut(s) 29, 358
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 1 cut(s) 322
NlaIII CATG 3 cut(s) 37, 74, 307
NlaIV GGNNCC 1 cut(s) 146
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 50
PciI ACATGT 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PscI ACATGT 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 2 cut(s) 144, 307
PstI CTGCAG 1 cut(s) 139
SaqAI TTAA 2 cut(s) 29, 358
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 2 cut(s) 144, 307
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 321
SetI ASST 4 cut(s) 94, 128, 142, 270
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 135
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 1 cut(s) 144
Sse9I AATT 1 cut(s) 345
SsiI CCGC 1 cut(s) 153
StyI CCWWGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 2 cut(s) 132, 357
TasI AATT 1 cut(s) 345
Tru1I TTAA 2 cut(s) 29, 358
Tru9I TTAA 2 cut(s) 29, 358
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 6 cut(s) 26, 36, 50, 200, 248, 292
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 345
XceI RCATGY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.