AT3G18880

Ribosomal protein S17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007843
Physical Location & Seq
Forward (+)
6509500 .. 6510702
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18880.2

Sequence Viewer

Length: 318 bp
ATGAAGGCAGTGATAGGGACAGTGGTGTCGAACAAAATGCAGATGTCGGTGGTGGTAGCCGTCGACAGACTCTTCCACAATAATATCTACAATCGATATGTCAAGCGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAGTGAAATTGGATCCTTCAAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTTCAGAAATCATAAAGAAAGCACGCATTTATTCTCCACAAGCTGCTGCTGCGGCTCTCAATTCCTCAACCTCCATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

9.94

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 6 - 73 1.2e-28 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 263
AclWI GGATC 2 cut(s) 167, 180
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 180
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 4 cut(s) 254, 257, 260, 295
BamHI GGATCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 4 cut(s) 241, 244, 247, 307
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BisI GCNGC 5 cut(s) 255, 258, 261, 264, 296
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 256, 259, 262, 265, 297
BmiI GGNNCC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 94
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 282
BseXI GCAGC 4 cut(s) 241, 244, 247, 307
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 157, 172
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 167, 180
BsrDI GCAATG 1 cut(s) 285
BssMI GATC 2 cut(s) 157, 172
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 194, 235
BstDEI CTNAG 1 cut(s) 291
BstKTI GATC 2 cut(s) 160, 175
BstMBI GATC 2 cut(s) 157, 172
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 260, 263
BstV1I GCAGC 4 cut(s) 241, 244, 247, 307
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 94
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 27
Cac8I GCNNGC 2 cut(s) 194, 235
ClaI ATCGAT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 59, 125, 184, 254, 266, 298
CviKI_1 RGCY 6 cut(s) 59, 125, 184, 254, 266, 298
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 159, 174
DpnII GATC 2 cut(s) 157, 172
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 184
FaeI CATG 1 cut(s) 124
FaiI YATR 4 cut(s) 99, 122, 198, 224
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 120
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 255, 258, 261, 264, 296
Fsp4HI GCNGC 5 cut(s) 255, 258, 261, 264, 296
GluI GCNGC 5 cut(s) 255, 258, 261, 264, 296
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 1 cut(s) 124
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 69, 140
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 263
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 157, 172
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 4 cut(s) 241, 244, 247, 307
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 159, 174
MboI GATC 2 cut(s) 157, 172
MboII GAAGA 2 cut(s) 64, 303
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 167, 271
MlyI GAGTC 2 cut(s) 63, 134
MnlI CCTC 2 cut(s) 286, 292
MwoI GCNNNNNNNGC 2 cut(s) 260, 263
NdeII GATC 2 cut(s) 157, 172
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 174
PceI AGGCCT 1 cut(s) 184
PkrI GCNGC 5 cut(s) 256, 259, 262, 265, 297
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 2 cut(s) 63, 134
PpsI GAGTC 2 cut(s) 63, 134
PspN4I GGNNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 172
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 62
SatI GCNGC 5 cut(s) 255, 258, 261, 264, 296
Sau3AI GATC 2 cut(s) 157, 172
SchI GAGTC 2 cut(s) 63, 134
SetI ASST 2 cut(s) 256, 284
Sse9I AATT 2 cut(s) 167, 271
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 263
StuI AGGCCT 1 cut(s) 184
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 29, 63, 94, 160
TasI AATT 2 cut(s) 167, 271
TauI GCSGC 1 cut(s) 266
TscAI CASTG 2 cut(s) 15, 27
TseI GCWGC 4 cut(s) 254, 257, 260, 295
TspDTI ATGAA 3 cut(s) 17, 109, 147
TspRI CASTG 2 cut(s) 15, 27
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.