FvH4_5g34540

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007843
Physical Location & Seq
Forward (+)
25208438 .. 25210902
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34540.t1

Sequence Viewer

Length: 492 bp
ATGGTAAAATCGGACCCCGAAATTAAAACCAGCAAACCCTCGCAGAATTTATACTCGCTCTCTTCACTTCACCATCCACTCCCTGACGTCCGGAGCCTGCTCTCTCATCTCCGACGTCTCTCAATTTCTGAATCGCACTCAGATTCTCTGCAGGTCGTTTGTAAGGCCAGTATATTCACATTTTTGTTGAGAAAGATGAAGACAGTGGTGGGGATGGTCGTTTCCAATAAAATGCAGAAATCAGTGGTTGTGGCGGTGGATAGGCTGTTCCATCACAAGCTCTACAACCGATACGTGAAGCGGACATCCAAGTTCATGGCCCACGATGAGAACGATCATTGCAACATTGGAGACCGGGTTCGATTGGAGCCTTCACGCCCTTTGAGCAAACGTAAGCATTGGATTGTTGCTGAAATCGTCACCAAAGCACGCATCTATCAGCCTCCTTCCCCATCGGCTTCAGCTGCAGCTCCACTTGATACCAATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

164

Amino Acids

18.5

Weight (kDa)

10.1

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 71 - 138 6.1e-31 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 90, 118
Acc36I ACCTGC 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 2 cut(s) 254, 301
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 87, 115
AloI GAACNNNNNNTCC 4 cut(s) 251, 283, 342, 374
AluBI AGCT 3 cut(s) 280, 464, 470
AluI AGCT 3 cut(s) 280, 464, 470
Alw26I GTCTC 2 cut(s) 122, 345
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 2 cut(s) 165, 318
ApeKI GCWGC 2 cut(s) 464, 467
ApoI RAATTY 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 13, 319
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 2 cut(s) 62, 412
AvaII GGWCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 451, 479
BccI CCATC 4 cut(s) 81, 208, 279, 460
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 122, 345
BfmI CTRYAG 2 cut(s) 149, 465
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 465, 468
BlsI GCNGC 2 cut(s) 466, 469
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 319
BmiI GGNNCC 3 cut(s) 15, 95, 369
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 295
BsaHI GRCGYC 2 cut(s) 87, 115
BsaI GGTCTC 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 337
BseAI TCCGGA 1 cut(s) 90
BseGI GGATG 3 cut(s) 73, 219, 305
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 451, 479
BshFI GGCC 2 cut(s) 167, 320
BsiSI CCGG 2 cut(s) 91, 355
BsmAI GTCTC 2 cut(s) 122, 345
BsmBI CGTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 167, 320
Bso31I GGTCTC 1 cut(s) 345
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 254, 301
BspANI GGCC 2 cut(s) 167, 320
BspCNI CTCAG 1 cut(s) 152
BspEI TCCGGA 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 15, 95, 369
BspMAI CTGCAG 2 cut(s) 153, 469
BspMI ACCTGC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 1 cut(s) 168
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 2 cut(s) 87, 115
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 2 cut(s) 87, 115
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 98, 430
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 73, 219, 305
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 122, 345
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 384, 464
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 2 cut(s) 149, 465
BstV1I GCAGC 2 cut(s) 451, 479
BstV2I GAAGAC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 316
BsuRI GGCC 2 cut(s) 167, 320
BtsCI GGATG 3 cut(s) 73, 219, 305
BtsIMutI CAGTG 2 cut(s) 210, 249
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 98, 430
Cfr13I GGNCC 2 cut(s) 13, 319
CviAII CATG 1 cut(s) 316
DdeI CTNAG 1 cut(s) 139
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 319
FaiI YATR 3 cut(s) 52, 173, 317
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 465, 468
FokI GGATG 3 cut(s) 60, 226, 292
Fsp4HI GCNGC 2 cut(s) 465, 468
GluI GCNGC 2 cut(s) 465, 468
HaeIII GGCC 2 cut(s) 167, 320
HapII CCGG 2 cut(s) 91, 355
Hin1I GRCGYC 2 cut(s) 87, 115
Hin1II CATG 1 cut(s) 319
HinfI GANTC 2 cut(s) 131, 143
HpaII CCGG 2 cut(s) 91, 355
HphI GGTGA 2 cut(s) 62, 412
Hpy188I TCNGA 4 cut(s) 13, 113, 130, 142
Hpy188III TCNNGA 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 381, 456
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 4 cut(s) 87, 115, 294, 391
HpyCH4V TGCA 4 cut(s) 151, 235, 342, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 464
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 4 cut(s) 87, 115, 294, 391
Hsp92I GRCGYC 2 cut(s) 87, 115
Hsp92II CATG 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 3 cut(s) 93, 367, 475
LpnPI CCDG 7 cut(s) 43, 96, 104, 110, 137, 181, 368
Lsp1109I GCAGC 2 cut(s) 451, 479
LweI GCATC 1 cut(s) 441
MaeII ACGT 4 cut(s) 87, 115, 294, 391
MaeIII GTNAC 1 cut(s) 418
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 54, 211
MluCI AATT 4 cut(s) 21, 46, 123, 484
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 2 cut(s) 49, 453
MroI TCCGGA 1 cut(s) 90
MseI TTAA 2 cut(s) 24, 490
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 91, 355
MspR9I CCNGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 384, 464
NciI CCSGG 1 cut(s) 356
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 3 cut(s) 15, 95, 369
NmuCI GTSAC 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PfeI GAWTC 2 cut(s) 131, 143
PkrI GCNGC 2 cut(s) 466, 469
Ppu21I YACGTR 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 15, 95, 369
PspPI GGNCC 2 cut(s) 13, 319
PstI CTGCAG 2 cut(s) 153, 469
PvuII CAGCTG 1 cut(s) 464
SaqAI TTAA 2 cut(s) 24, 490
SatI GCNGC 2 cut(s) 465, 468
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 13, 319
ScrFI CCNGG 1 cut(s) 356
SetI ASST 8 cut(s) 90, 118, 156, 282, 297, 394, 466, 472
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 2 cut(s) 149, 465
SinI GGWCC 1 cut(s) 13
Sse9I AATT 4 cut(s) 21, 46, 123, 484
SsiI CCGC 2 cut(s) 254, 301
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 4 cut(s) 90, 118, 297, 394
TaqI TCGA 1 cut(s) 361
TasI AATT 4 cut(s) 21, 46, 123, 484
TfiI GAWTC 2 cut(s) 131, 143
Tru1I TTAA 2 cut(s) 24, 490
Tru9I TTAA 2 cut(s) 24, 490
TscAI CASTG 2 cut(s) 210, 249
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 2 cut(s) 464, 467
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 212, 304
TspRI CASTG 2 cut(s) 210, 249
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 46
ZraI GACGTC 2 cut(s) 88, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.