Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

18463998 .. 18466085

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGTGAGAAGCCATGGCAGCCACTACTCCAGAGCTTCGAGAAACTATCAAATTGCGTCCAAACTCATCTTTCCAATTTCATCGGCATCAAGAATACTCCTCCTAGTTCTCAATCCACAATCCAAAACCCAATCATCTCCTTGGACTCTTCTCCGCCAATCGCAACAAACAGTTCCAGTCTTCAGAAACTTCCTCTCAAGGACAAGTCTACTGGTCCTGTGACTAAAGAGGATCTCGGGAGAGCTACATGGACGTTTCTTCACACTCTTGCTGCGCAGTATCCAGAAAAACCAACAAGGCAGCAAAAAAAGGATGTTAAAGAGCTGATGACGATACTTTCCCGAATGTATCCTTGTAGAGAATGTGCGGATCACTTCAAAGAAATCCTAAGATCGAATCCCGCACAAGCTGGATCTCAGGAGGAATTCTCACAGTGGCTTTGCCATGTACACAACACCGTAAATAGAAGTTTGGGGAAATTGGTGTTCCCTTGCGAGAGAGTGGATGCAAGATGGGGCAAGTTAGAGTGTGAGCAGAAAAGTTGTGATCTCCATGGAACTTCTATGGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

191

Amino Acids

21.6

Weight (kDa)

8.46

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	81 - 172	2.2e-34	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	3 cut(s)	155, 368, 402
AclWI	GGATC	3 cut(s)	240, 378, 421
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	4 cut(s)	36, 245, 325, 410
AluI	AGCT	4 cut(s)	36, 245, 325, 410
AlwI	GGATC	3 cut(s)	240, 378, 421
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	19, 272, 301
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	31, 259, 313
BccI	CCATC	1 cut(s)	507
BciVI	GTATCC	2 cut(s)	291, 360
BfaI	CTAG	1 cut(s)	105
BfuI	GTATCC	2 cut(s)	291, 360
BisI	GCNGC	3 cut(s)	20, 273, 302
BlsI	GCNGC	3 cut(s)	21, 274, 303
Bme18I	GGWCC	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	96, 496
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	14, 141, 553
Bse1I	ACTGG	2 cut(s)	177, 217
BseDI	CCNNGG	3 cut(s)	14, 141, 553
BseGI	GGATG	2 cut(s)	319, 511
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	177, 217
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	31, 259, 313
BsiHKCI	CYCGRG	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	5 cut(s)	232, 370, 392, 413, 547
Bsp19I	CCATGG	2 cut(s)	14, 553
BspACI	CCGC	3 cut(s)	155, 368, 402
BspCNI	CTCAG	1 cut(s)	430
BspPI	GGATC	3 cut(s)	240, 378, 421
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	177, 217
BssECI	CCNNGG	3 cut(s)	14, 141, 553
BssMI	GATC	5 cut(s)	232, 370, 392, 413, 547
BssT1I	CCWWGG	3 cut(s)	14, 141, 553
Bst4CI	ACNGT	3 cut(s)	173, 435, 460
Bst6I	CTCTTC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	389, 417
BstDSI	CCRYGG	2 cut(s)	14, 553
BstF5I	GGATG	2 cut(s)	319, 511
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	235, 373, 395, 416, 550
BstMBI	GATC	5 cut(s)	232, 370, 392, 413, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstV1I	GCAGC	3 cut(s)	31, 259, 313
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	232, 413
BstYI	RGATCY	2 cut(s)	232, 413
BsuI	GTATCC	2 cut(s)	291, 360
BtgI	CCRYGG	2 cut(s)	14, 553
BtsCI	GGATG	2 cut(s)	319, 511
BtsIMutI	CAGTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	4 cut(s)	15, 249, 446, 554
CviJI	RGCY	7 cut(s)	13, 22, 36, 245, 325, 410, 439
CviKI_1	RGCY	7 cut(s)	13, 22, 36, 245, 325, 410, 439
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	389, 417
DpnI	GATC	5 cut(s)	234, 372, 394, 415, 549
DpnII	GATC	5 cut(s)	232, 370, 392, 413, 547
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	14, 141, 553
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	425
EcoT14I	CCWWGG	3 cut(s)	14, 141, 553
ErhI	CCWWGG	3 cut(s)	14, 141, 553
FaeI	CATG	4 cut(s)	18, 252, 449, 557
FaiI	YATR	5 cut(s)	16, 250, 447, 555, 566
FatI	CATG	4 cut(s)	14, 248, 445, 553
FauI	CCCGC	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	20, 273, 302
FokI	GGATG	2 cut(s)	326, 518
Fsp4HI	GCNGC	3 cut(s)	20, 273, 302
FspBI	CTAG	1 cut(s)	105
FspI	TGCGCA	1 cut(s)	276
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	3 cut(s)	20, 273, 302
GsuI	CTGGAG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	18, 252, 449, 557
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	146, 397
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	210, 451
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	7 cut(s)	31, 40, 91, 238, 284, 342, 419
Hpy8I	GTNNAC	2 cut(s)	210, 451
HpyCH4III	ACNGT	3 cut(s)	173, 435, 460
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	389, 417
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	18, 252, 449, 557
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	5 cut(s)	232, 370, 392, 413, 547
LpnPI	CCDG	7 cut(s)	44, 190, 198, 231, 297, 396, 404
Lsp1109I	GCAGC	3 cut(s)	31, 259, 313
LweI	GCATC	2 cut(s)	96, 496
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	5 cut(s)	234, 372, 394, 415, 549
MboI	GATC	5 cut(s)	232, 370, 392, 413, 547
MboII	GAAGA	3 cut(s)	141, 173, 251
MflI	RGATCY	2 cut(s)	232, 413
MluCI	AATT	4 cut(s)	52, 76, 425, 479
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	111, 204, 223, 415
MseI	TTAA	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	19
NcoI	CCATGG	2 cut(s)	14, 553
NdeII	GATC	5 cut(s)	232, 370, 392, 413, 547
NlaIII	CATG	4 cut(s)	18, 252, 449, 557
NmuCI	GTSAC	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	21, 274, 303
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	232, 413
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	20, 273, 302
Sau3AI	GATC	5 cut(s)	232, 370, 392, 413, 547
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	140
SetI	ASST	5 cut(s)	38, 247, 257, 327, 412
SfaNI	GCATC	2 cut(s)	96, 496
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	52, 76, 425, 479
SsiI	CCGC	3 cut(s)	155, 368, 402
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	3 cut(s)	14, 141, 553
TaaI	ACNGT	3 cut(s)	173, 435, 460
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	39, 395
TasI	AATT	4 cut(s)	52, 76, 425, 479
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	19, 272, 301
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.