Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

20295416 .. 20297700

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1097000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCTGTGAAGATGTCGGAGCATCCATTCCATGCCCTGTTTCAAACTTTTTCAAAAGTCTCCAATTCGATTCAAACCCAACTCTATAATCTCATAGCCCAACCTCACAAGCCATCACCCAACGCCCAAAAAAGCCTTCTCTCCACCTCTTCCTCCTCCTCCTCCAGAGTGGTAGCCTGGTCAGACAATGGCTCCGCCGATCATCCCGAAGCCAAAGACATCCTCAGCACGAAAAAGGTAAAATCTGCTGCTCCTTTGACGAAAGAAGAGCTTGGAAGATCTACTTGGACTTTTCTTCACACTCTTGCTGCTCAGTATCCAGATAAACCGACAAGGCAACAGAAGAAGGATGTAAAGGAATTGATGTCAATATTATCACGAATGTACCCCTGCAAGGAATGTGCAGATCACTTTCAAGAAATTCTGAGATCAAATCCTGTACAGGCTGGATCACATGCCGAGTTCTCCCAATGGCTATGTCATGTGCATAATACGGTTAACAGAAGCGTTAACAAACCGATTTTCCCCTGTGAACGAGTTGATGCACGGTGGGGCAAGTTAGAGTGCGAACGGCGTGCTTGCGATCTGTTAGGAATTACCGGAAGTTTTGGTGACAACACATATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

210

Amino Acids

23.55

Weight (kDa)

9.01

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	93 - 184	1.4e-34	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	2 cut(s)	386, 441
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	44, 54, 74, 416
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 268, 300
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	457
ApeKI	GCWGC	2 cut(s)	248, 308
ApoI	RAATTY	1 cut(s)	420
AsuHPI	GGTGA	2 cut(s)	108, 623
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	235, 295
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	2 cut(s)	249, 309
BlsI	GCNGC	2 cut(s)	250, 310
Bme1390I	CCNGG	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	31, 532
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	4 cut(s)	22, 202, 219, 355
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	3 cut(s)	238, 326, 416
BseRI	GAGGAG	3 cut(s)	145, 148, 151
BseXI	GCAGC	2 cut(s)	235, 295
BsgI	GTGCAG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	3 cut(s)	237, 325, 417
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	439
BssMI	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	496, 549
Bst6I	CTCTTC	2 cut(s)	154, 261
BstAUI	TGTACA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	576, 580
BstDEI	CTNAG	3 cut(s)	224, 312, 425
BstF5I	GGATG	4 cut(s)	22, 202, 219, 355
BstKTI	GATC	6 cut(s)	202, 281, 409, 431, 452, 586
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	235, 295
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	22, 202, 219, 355
Cac8I	GCNNGC	2 cut(s)	576, 580
Csp6I	GTAC	2 cut(s)	385, 440
CviAII	CATG	3 cut(s)	32, 455, 482
CviJI	RGCY	9 cut(s)	98, 112, 135, 176, 192, 212, 271, 446, 475
CviKI_1	RGCY	9 cut(s)	98, 112, 135, 176, 192, 212, 271, 446, 475
CviQI	GTAC	2 cut(s)	385, 440
DdeI	CTNAG	3 cut(s)	224, 312, 425
DpnI	GATC	6 cut(s)	201, 280, 408, 430, 451, 585
DpnII	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
Eam1104I	CTCTTC	2 cut(s)	154, 261
EarI	CTCTTC	2 cut(s)	154, 261
EciI	GGCGGA	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	35, 458, 485
FaiI	YATR	8 cut(s)	33, 87, 95, 456, 478, 483, 489, 622
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 268, 300
FatI	CATG	3 cut(s)	31, 454, 481
Fnu4HI	GCNGC	2 cut(s)	249, 309
FokI	GGATG	4 cut(s)	9, 189, 206, 362
Fsp4HI	GCNGC	2 cut(s)	249, 309
GluI	GCNGC	2 cut(s)	249, 309
GsuI	CTGGAG	1 cut(s)	148
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	3 cut(s)	35, 458, 485
HincII	GTYRAC	2 cut(s)	499, 511
HindII	GTYRAC	2 cut(s)	499, 511
HinfI	GANTC	1 cut(s)	70
HpaI	GTTAAC	2 cut(s)	499, 511
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	2 cut(s)	108, 623
Hpy166II	GTNNAC	3 cut(s)	499, 511, 533
Hpy188I	TCNGA	3 cut(s)	19, 184, 426
Hpy188III	TCNNGA	5 cut(s)	165, 206, 320, 378, 416
Hpy8I	GTNNAC	3 cut(s)	499, 511, 533
HpyAV	CCTTC	2 cut(s)	146, 340
HpyCH4III	ACNGT	2 cut(s)	496, 549
HpyCH4V	TGCA	4 cut(s)	393, 404, 487, 545
HpyF3I	CTNAG	3 cut(s)	224, 312, 425
Hsp92II	CATG	3 cut(s)	35, 458, 485
KspAI	GTTAAC	2 cut(s)	499, 511
Kzo9I	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	19, 197, 256
Lsp1109I	GCAGC	2 cut(s)	235, 295
LweI	GCATC	2 cut(s)	31, 532
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	6 cut(s)	201, 280, 408, 430, 451, 585
MboI	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
MboII	GAAGA	6 cut(s)	22, 141, 278, 287, 288, 355
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	4 cut(s)	64, 359, 420, 594
MnlI	CCTC	7 cut(s)	114, 157, 163, 166, 169, 172, 233
MseI	TTAA	3 cut(s)	498, 510, 628
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
NlaIII	CATG	3 cut(s)	35, 458, 485
NlaIV	GGNNCC	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	250, 310
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	2 cut(s)	386, 441
RsaNI	GTAC	2 cut(s)	385, 440
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	498, 510, 628
SatI	GCNGC	2 cut(s)	249, 309
Sau3AI	GATC	6 cut(s)	199, 278, 406, 428, 449, 583
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	4 cut(s)	106, 149, 240, 273
SfaNI	GCATC	2 cut(s)	31, 532
Sse9I	AATT	4 cut(s)	64, 359, 420, 594
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	496, 549
TaqI	TCGA	1 cut(s)	68
TasI	AATT	4 cut(s)	64, 359, 420, 594
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	498, 510, 628
Tru9I	TTAA	3 cut(s)	498, 510, 628
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	2 cut(s)	248, 308
Tsp45I	GTSAC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.