Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Reverse (-)

62627886 .. 62630304

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCCGAGCATCCATTGCAGGCACTCTTCCAAACTTTCGCAAAACTCTCAAACTCAGTTCAAACCCACCTCTCTAATCTCATACCCCAACCTCCTCACCCCACACCCAAAACCCCCTCAATCTCCATCTCTTCCTCCTCCAAAGTCTCCCCATCACAGAATGACCCCACCCATCTCCAACCCCAAGATCTCATCAACAAGGGAAAATCGGCTGGTCCTGTGACAAAAGAAGGGCTCGGAAGAGCCACTTGGACTTTTCTTCACACTCTTGCTGCTCAGTATCCAGATAATCCAACGAGGCAACAGAAGAAGGATGTAAAAGAATTGATGTCAATACTATCACGAATGTACCCCTGCAAGGAATGTGCAGATCATTTTCAAGAAATTCTGAGATCAAACCCTGTACAGGCTGGATCTCATGCTGAATTCTCCCAATGGCTATGTCATGTGCATAATACTGTTAACAGAAGCCTTAACAAAGTGGTTTTCCCCTGTGAACGAGTTGATGCAAGGTGGGGCAAGTTAGAGTGCGAACAGCGTGCTTGTGATGTACTGGGAAGTACCACAAGTTTTTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

193

Amino Acids

21.64

Weight (kDa)

8.94

Isoelectric Point (pI)

60.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	81 - 172	5.9e-34	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	384, 425
AfaI	GTAC	4 cut(s)	350, 405, 552, 562
AfiI	CCNNNNNNNGG	2 cut(s)	358, 406
AgsI	TTSAA	2 cut(s)	62, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	384, 425
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	332, 365
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	134, 160, 180
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	19, 496
BmuI	ACTGGG	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 406
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	10, 319
BseLI	CCNNNNNNNGG	2 cut(s)	358, 406
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	69, 290, 380
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	84, 127
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	387
BslI	CCNNNNNNNGG	2 cut(s)	358, 406
BsmAI	GTCTC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	187, 370, 392, 413
BspCNI	CTCAG	3 cut(s)	68, 289, 381
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	558
BssMI	GATC	4 cut(s)	187, 370, 392, 413
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	3 cut(s)	32, 136, 235
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	21, 540
BstDEI	CTNAG	3 cut(s)	55, 276, 389
BstF5I	GGATG	2 cut(s)	10, 319
BstKTI	GATC	4 cut(s)	190, 373, 395, 416
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	187, 370, 392, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	187, 413
BstYI	RGATCY	2 cut(s)	187, 413
BsuI	GTATCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	10, 319
Cac8I	GCNNGC	2 cut(s)	21, 540
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	349, 404, 551, 561
CviAII	CATG	2 cut(s)	419, 446
CviJI	RGCY	6 cut(s)	212, 235, 245, 410, 439, 471
CviKI_1	RGCY	6 cut(s)	212, 235, 245, 410, 439, 471
CviQI	GTAC	4 cut(s)	349, 404, 551, 561
DdeI	CTNAG	3 cut(s)	55, 276, 389
DpnI	GATC	4 cut(s)	189, 372, 394, 415
DpnII	GATC	4 cut(s)	187, 370, 392, 413
Eam1104I	CTCTTC	3 cut(s)	32, 136, 235
EarI	CTCTTC	3 cut(s)	32, 136, 235
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	2 cut(s)	422, 449
FaiI	YATR	5 cut(s)	83, 420, 442, 447, 453
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	2 cut(s)	418, 445
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	422, 449
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HpaI	GTTAAC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	463, 497
Hpy188I	TCNGA	3 cut(s)	7, 239, 390
Hpy188III	TCNNGA	3 cut(s)	284, 342, 380
Hpy8I	GTNNAC	2 cut(s)	463, 497
HpyAV	CCTTC	2 cut(s)	224, 304
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	19, 357, 368, 451, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	55, 276, 389
Hsp92II	CATG	2 cut(s)	422, 449
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	187, 370, 392, 413
LguI	GCTCTTC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	19, 496
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	189, 372, 394, 415
MboI	GATC	4 cut(s)	187, 370, 392, 413
MboII	GAAGA	5 cut(s)	19, 123, 251, 252, 319
MflI	RGATCY	2 cut(s)	187, 413
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	323, 384, 425
MmeI	TCCRAC	2 cut(s)	202, 317
MnlI	CCTC	7 cut(s)	80, 102, 105, 127, 145, 148, 291
MseI	TTAA	2 cut(s)	462, 474
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	187, 370, 392, 413
NlaIII	CATG	2 cut(s)	422, 449
NmuCI	GTSAC	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	187, 413
RsaI	GTAC	4 cut(s)	350, 405, 552, 562
RsaNI	GTAC	4 cut(s)	349, 404, 551, 561
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	462, 474
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	4 cut(s)	187, 370, 392, 413
Sau96I	GGNCC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	3 cut(s)	72, 94, 515
SfaNI	GCATC	2 cut(s)	19, 496
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	323, 384, 425
TaaI	ACNGT	1 cut(s)	460
TasI	AATT	3 cut(s)	323, 384, 425
TatI	WGTACW	2 cut(s)	403, 550
Tru1I	TTAA	2 cut(s)	462, 474
Tru9I	TTAA	2 cut(s)	462, 474
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	384, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.