Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

8254740 .. 8256343

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTATTTTTGCAACATGTTTGGCAGATCAAACCCTGTACAGGCTGGATCTCATGCTGAATTCTCCCAATGGCTATGTCATGTGCATAATACTGTTAACAGAAGCCTTAACAAAGTGGTTTTCCCCTGTGAACGAGTTGATGCAAGGTGGGGCAAGTTAGAGTGCGAACAGCGTGCTTGCGATGTACTGGGAAGTACCACAAGTTTTTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

71

Amino Acids

8.21

Weight (kDa)

8.38

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	10 - 50	2.5e-10	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	59
AfaI	GTAC	3 cut(s)	39, 186, 196
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	15
AlwI	GGATC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	40
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	26, 47
BspPI	GGATC	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	26, 47
Bst4CI	ACNGT	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	174, 178
BstKTI	GATC	2 cut(s)	29, 50
BstMBI	GATC	2 cut(s)	26, 47
BstNSI	RCATGY	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	174, 178
Csp6I	GTAC	3 cut(s)	38, 185, 195
CviAII	CATG	3 cut(s)	16, 53, 80
CviJI	RGCY	3 cut(s)	44, 73, 105
CviKI_1	RGCY	3 cut(s)	44, 73, 105
CviQI	GTAC	3 cut(s)	38, 185, 195
DpnI	GATC	2 cut(s)	28, 49
DpnII	GATC	2 cut(s)	26, 47
EcoRI	GAATTC	1 cut(s)	59
FaeI	CATG	3 cut(s)	19, 56, 83
FaiI	YATR	5 cut(s)	17, 54, 76, 81, 87
FatI	CATG	3 cut(s)	15, 52, 79
Hin1II	CATG	3 cut(s)	19, 56, 83
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	97, 131
Hpy8I	GTNNAC	2 cut(s)	97, 131
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	12, 85, 143
Hsp92II	CATG	3 cut(s)	19, 56, 83
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	26, 47
LpnPI	CCDG	5 cut(s)	26, 30, 48, 139, 173
LweI	GCATC	1 cut(s)	130
MalI	GATC	2 cut(s)	28, 49
MboI	GATC	2 cut(s)	26, 47
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	1 cut(s)	59
MseI	TTAA	2 cut(s)	96, 108
NdeII	GATC	2 cut(s)	26, 47
NlaIII	CATG	3 cut(s)	19, 56, 83
NspI	RCATGY	1 cut(s)	19
PciI	ACATGT	1 cut(s)	15
PscI	ACATGT	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	3 cut(s)	39, 186, 196
RsaNI	GTAC	3 cut(s)	38, 185, 195
SaqAI	TTAA	2 cut(s)	96, 108
Sau3AI	GATC	2 cut(s)	26, 47
SetI	ASST	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	130
Sse9I	AATT	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	59
TatI	WGTACW	2 cut(s)	37, 184
Tru1I	TTAA	2 cut(s)	96, 108
Tru9I	TTAA	2 cut(s)	96, 108
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.