Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

3147040 .. 3149831

Gene Structure 2792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTGAGAACCCATTACAGGCACTCTTCCAAACTTTCACAAAAATCTCAAACACAGTTCAGACCCATCTCTCTAATCTCGTACCCCAACCTCACCCCACTTCACCCATCACCAAAGCCCCCTCCATCTCCATCTCTTCCTCCTCCCAAGTCACCCCATCGCACAATGACTCCACCCAACATCTCATCAACAAGGGGAAGTCGAGTGCTCCTGTGACTAAAGAAGGACTTGGAAGGGCCACTTGGACTTTTCTTCACACCCTAGCTGCTCAGTATCCGGATAATCCAACAAGGCAACAGAAGAAGGATGTAAAAGAATTGATGTCAATATTATCACGAATGTACCCCTGCAAGGAATGTGCAGATCATTTTCAAGAAATTCTGAGGCAAGTCACACTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

9.23

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Evr1_Alr	PF04777	79 - 130	2.9e-18	Erv1 / Alr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	2 cut(s)	84, 344
AfiI	CCNNNNNNNGG	2 cut(s)	19, 352
AgsI	TTSAA	1 cut(s)	374
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	86, 96, 103, 145
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	5 cut(s)	75, 116, 134, 140, 166
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 352
BseAI	TCCGGA	1 cut(s)	277
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	19, 352
BseMII	CTCAG	2 cut(s)	284, 374
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	19, 352
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	283, 375
BspEI	TCCGGA	1 cut(s)	277
BssMI	GATC	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	32, 142
BstDEI	CTNAG	3 cut(s)	6, 270, 383
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	83, 343
CviJI	RGCY	4 cut(s)	5, 119, 239, 266
CviKI_1	RGCY	4 cut(s)	5, 119, 239, 266
CviQI	GTAC	2 cut(s)	83, 343
DdeI	CTNAG	3 cut(s)	6, 270, 383
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	32, 142
EarI	CTCTTC	2 cut(s)	32, 142
FalI	AAGNNNNNCTT	5 cut(s)	213, 245, 226, 258, 381
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	4 cut(s)	86, 96, 103, 145
Hpy188I	TCNGA	2 cut(s)	63, 384
Hpy188III	TCNNGA	3 cut(s)	278, 336, 374
HpyAV	CCTTC	3 cut(s)	218, 228, 298
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	351, 362
HpyF3I	CTNAG	3 cut(s)	6, 270, 383
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	5, 225, 291, 361
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	151, 214, 391
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	19, 129, 245, 313
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	317, 378
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	5 cut(s)	102, 133, 151, 154, 378
MroI	TCCGGA	1 cut(s)	277
MspI	CCGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	364
NmuCI	GTSAC	3 cut(s)	151, 214, 391
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	237
RsaI	GTAC	2 cut(s)	84, 344
RsaNI	GTAC	2 cut(s)	83, 343
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	2 cut(s)	94, 268
Sse9I	AATT	2 cut(s)	317, 378
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	317, 378
TseFI	GTSAC	3 cut(s)	151, 214, 391
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	3 cut(s)	151, 214, 391
XapI	RAATTY	1 cut(s)	378
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.