Rh6CG049400

sulfhydryl oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009180
Physical Location & Seq
Forward (+)
4864639 .. 4875259
10621 bp
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UTR
Exon/CDS
Intron
Rh6CG049400.1

Sequence Viewer

Length: 444 bp
ATGTCCGAGCATCCATTGCAGGCACTCTTCCAAACTTTCGCAAAACTCTCAAACTCAGTTCAAACCCACCTCTCTAATCTCATACCCCAACCTCCTCACCCCACACCCAAAACCCCCTCAATCTCCATCTCTTCCTCCTCCAAAGTCTCCCCATCACACAATGACTCCACCCATCTCCAACCCCAAGATCTCATCAACAACAAGGGTAAATCGGCTGGTCCTGTGACGAAAGAAGGGCTCGGAAGAGCCACTTGGACTTTTCTTCACACTCTTGCTGCTCAGTATCCGGATAATCCAACGAGGCAACAGAAGAAGGATGTAAAAGAATTGATGTCAATACTATCACGAATGTACCCCTGCAAGGAATGTGCGGATCATTTTCAAGAAATTCTGAGGTACACAGTCTCATCTTTATTGAAGCTCATCATTTTTTGTGGTCACTAG

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

9.24

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Evr1_Alr PF04777 82 - 132 3.1e-18 Erv1 / Alr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 2 cut(s) 353, 398
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 3 cut(s) 62, 383, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 151, 409
AlwI GGATC 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BanII GRGCYC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 134, 160, 180
BciVI GTATCC 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 151, 409
BfaI CTAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 294
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmsI GCATC 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 286
BseGI GGATG 2 cut(s) 10, 322
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 69, 293, 383
BseRI GAGGAG 2 cut(s) 84, 127
BseXI GCAGC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 151, 409
Bsp1286I GDGCHC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 187, 373
BspACI CCGC 1 cut(s) 371
BspCNI CTCAG 3 cut(s) 68, 292, 384
BspEI TCCGGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 381
BspQI GCTCTTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 14
BssMI GATC 2 cut(s) 187, 373
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 3 cut(s) 32, 136, 238
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 55, 279, 392
BstF5I GGATG 2 cut(s) 10, 322
BstKTI GATC 2 cut(s) 190, 376
BstMAI GTCTC 2 cut(s) 151, 409
BstMBI GATC 2 cut(s) 187, 373
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 1 cut(s) 294
BtsCI GGATG 2 cut(s) 10, 322
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 352, 397
CviJI RGCY 4 cut(s) 215, 238, 248, 421
CviKI_1 RGCY 4 cut(s) 215, 238, 248, 421
CviQI GTAC 2 cut(s) 352, 397
DdeI CTNAG 3 cut(s) 55, 279, 392
DpnI GATC 2 cut(s) 189, 375
DpnII GATC 2 cut(s) 187, 373
Eam1104I CTCTTC 3 cut(s) 32, 136, 238
EarI CTCTTC 3 cut(s) 32, 136, 238
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 240
FaiI YATR 1 cut(s) 83
FalI AAGNNNNNCTT 2 cut(s) 235, 267
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 442
GluI GCNGC 1 cut(s) 276
HapII CCGG 1 cut(s) 287
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 3 cut(s) 7, 242, 393
Hpy188III TCNNGA 3 cut(s) 287, 345, 383
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 2 cut(s) 227, 307
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 19, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 55, 279, 392
Kpn2I TCCGGA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 187, 373
LguI GCTCTTC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 5, 201, 234, 300, 370
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 223, 437
MalI GATC 2 cut(s) 189, 375
MboI GATC 2 cut(s) 187, 373
MboII GAAGA 5 cut(s) 19, 123, 254, 255, 322
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 2 cut(s) 326, 387
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 202, 320
MnlI CCTC 8 cut(s) 80, 102, 105, 127, 145, 148, 294, 387
MroI TCCGGA 1 cut(s) 286
MspI CCGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 187, 373
NmuCI GTSAC 2 cut(s) 223, 437
PciSI GCTCTTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 353, 398
RsaNI GTAC 2 cut(s) 352, 397
SapI GCTCTTC 1 cut(s) 238
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 187, 373
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 240
SetI ASST 4 cut(s) 72, 94, 398, 423
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 326, 387
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 403
TasI AATT 2 cut(s) 326, 387
TseFI GTSAC 2 cut(s) 223, 437
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 2 cut(s) 223, 437
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 387
XspI CTAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.