Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003898.1

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

3300 .. 5222

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003898.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtccgagcatccattgcaggcactcttccaaactttcgcaaaactctcaaactcagttcaaacccacctctctaatctcataccccaacctcctcaccccacacccaaaaccccctcaatctccatctcttcctcctccaaagtctccccatcacagaatgaccccacccatctccaaccccaagatctcatcaacaacaagtttgtatgcgaaaagagtggttatatgaaaagtcgtcaccgggtagctaatccgggaaaatccgctggtcctgtgacgaaagaagggctcggaagagccacttggacttttcttcacactctggctgctcagtatccggataatccaacgaggcaacagaagaaggatgtaaaagaattgatgtcaatactatcacgaatgtacccctgcaaggaatgtgcagatcattttcaagaaattctgagatcaaaccctgtacaggctggatctcatgctgaattctcccaatggctatgtcatgtgcataatactgttaacagaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

176

Amino Acids

19.76

Weight (kDa)

9.54

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	441, 482
AfaI	GTAC	2 cut(s)	407, 462
AfiI	CCNNNNNNNGG	2 cut(s)	415, 463
AgsI	TTSAA	2 cut(s)	62, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	441, 482
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	245, 258
AsuHPI	GGTGA	2 cut(s)	89, 233
AvaII	GGWCC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	134, 160, 180
BciVI	GTATCC	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	245, 258
BcoDI	GTCTC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	245, 258
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	2 cut(s)	245, 258
BmsI	GCATC	1 cut(s)	19
BpuMI	CCSGG	2 cut(s)	245, 258
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 463
Bse3DI	GCAATG	1 cut(s)	14
BseAI	TCCGGA	1 cut(s)	340
BseGI	GGATG	2 cut(s)	10, 376
BseLI	CCNNNNNNNGG	2 cut(s)	415, 463
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	69, 347, 437
BseRI	GAGGAG	2 cut(s)	84, 127
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	244, 257, 341
BslI	CCNNNNNNNGG	2 cut(s)	415, 463
BsmAI	GTCTC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	340
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	187, 427, 449, 470
BspACI	CCGC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	68, 346, 438
BspEI	TCCGGA	1 cut(s)	340
BspPI	GGATC	1 cut(s)	478
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	460
BssMI	GATC	4 cut(s)	187, 427, 449, 470
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	3 cut(s)	32, 136, 292
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	55, 333, 446
BstF5I	GGATG	2 cut(s)	10, 376
BstKTI	GATC	4 cut(s)	190, 430, 452, 473
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	187, 427, 449, 470
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	243, 256
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	187, 470
BstYI	RGATCY	2 cut(s)	187, 470
BsuI	GTATCC	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	10, 376
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	406, 461
CviAII	CATG	2 cut(s)	476, 503
CviJI	RGCY	6 cut(s)	251, 292, 302, 329, 467, 496
CviKI_1	RGCY	6 cut(s)	251, 292, 302, 329, 467, 496
CviQI	GTAC	2 cut(s)	406, 461
DdeI	CTNAG	3 cut(s)	55, 333, 446
DpnI	GATC	4 cut(s)	189, 429, 451, 472
DpnII	GATC	4 cut(s)	187, 427, 449, 470
Eam1104I	CTCTTC	3 cut(s)	32, 136, 292
EarI	CTCTTC	3 cut(s)	32, 136, 292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	479, 506
FaiI	YATR	8 cut(s)	83, 211, 228, 230, 477, 499, 504, 510
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FatI	CATG	2 cut(s)	475, 502
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	3 cut(s)	244, 257, 341
Hin1II	CATG	2 cut(s)	479, 506
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	3 cut(s)	244, 257, 341
HphI	GGTGA	2 cut(s)	89, 233
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	3 cut(s)	7, 296, 447
Hpy188III	TCNNGA	3 cut(s)	341, 399, 437
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	281, 361, 519
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	4 cut(s)	19, 414, 425, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	55, 333, 446
Hsp92II	CATG	2 cut(s)	479, 506
Kpn2I	TCCGGA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	187, 427, 449, 470
LguI	GCTCTTC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	239, 277
MalI	GATC	4 cut(s)	189, 429, 451, 472
MboI	GATC	4 cut(s)	187, 427, 449, 470
MboII	GAAGA	5 cut(s)	19, 123, 308, 309, 376
MflI	RGATCY	2 cut(s)	187, 470
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	3 cut(s)	380, 441, 482
MmeI	TCCRAC	2 cut(s)	202, 374
MnlI	CCTC	7 cut(s)	80, 102, 105, 127, 145, 148, 348
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	244, 257, 341
MspR9I	CCNGG	2 cut(s)	245, 258
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	2 cut(s)	245, 258
NdeII	GATC	4 cut(s)	187, 427, 449, 470
NlaIII	CATG	2 cut(s)	479, 506
NmuCI	GTSAC	2 cut(s)	239, 277
PciSI	GCTCTTC	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	187, 470
RsaI	GTAC	2 cut(s)	407, 462
RsaNI	GTAC	2 cut(s)	406, 461
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	4 cut(s)	187, 427, 449, 470
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	245, 258
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	4 cut(s)	72, 94, 253, 530
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	3 cut(s)	380, 441, 482
SsiI	CCGC	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	243, 256
TaaI	ACNGT	1 cut(s)	517
TasI	AATT	3 cut(s)	380, 441, 482
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	239, 277
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	239, 277
TspDTI	ATGAA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	441, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.