Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009180

Physical Location & Seq

Genomic Coordinates Forward (+)

11708418 .. 11710675

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08880.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTGTATGAAGATGTCGGAGCATCCATTCCACGCCCTCTTTCAAACTTTTGCAAAAGTCTCCAATTCGATTCAAACCCAACTCTCGAATCTCATCGCCCAGTCTCTCGAGCCATCACCCACCGCCCAAAAACGCCTCCTCTCTTCCTCCTCCAAAGTGGCAGGCTCATCAGACAATGGCTCCACCCAATCCCAGCCTAAAGATATCCTCAGCACGAAAATGGGAAAATCGGTTTCTCCTTTGACTAAAGAAGAACTCGGAAGATCCACTTGGACGTTTCTTCACACTCTTGCTGCTCAGTATCCAGATAAACCGACAAGGCAACAGAAGAAGGATGTAAAGGAACTGATGTCGATATTATCACGGATGTACCCCTGCAAGGAATGTGCGGATCACTTTCAAGAAATTCTGAGATCAAATCCTGTACAGGCTGGATCGCATGCCGAGTTCTCCCAATGGCTGTGTCATGTGCATAATACAGTTAATAGAAGCCTTAACAAACCGGTTTTCCCCTGTGAACGCGTTGATGCACGCTGGGGCAAGTTAGAGTGTGAACAGCGTGCTTGCGATCTACTAGGAATTACCGGAGATTTTGGTGACAATGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0016670 GO:0016971 GO:0016972 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Evr1_Alr

Protein Analysis

204

Amino Acids

22.72

Weight (kDa)

8.68

Isoelectric Point (pI)

65.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49880 AT1G49880
fragaria_vesca	FvH4_2g03990
malus_domestica	MD05G1097000.v1.1 MD10G1103100.v1.1
prunus_persica	Prupe.8G141400_v2.0.a1 Prupe.8G141400_v2.0.a1
pyrus_communis	pycom10g08880
rosa_chinensis	RchiOBHm_Chr6g0253041 RchiOBHm_Chr6g0253051 RchiOBHm_Chr6g0253221
rosa_multiflora	Rmu_sc0003898.1_g000002
rosa_roxburghii	Rroxscaffold_7G00212170
rosa_rugosa	Rorug05G0542900 Rorug05G0542900
rosa_samantha	Rh6AG057000 Rh6AG057700 Rh6BG051600 Rh6CG049400 Rh6DG045100 Rh6DG045300
rosa_wichuraiana	Rw6G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	522
AciI	CCGC	2 cut(s)	123, 389
AclWI	GGATC	3 cut(s)	258, 399, 442
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	2 cut(s)	371, 426
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	44, 74, 401
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
Alw26I	GTCTC	2 cut(s)	64, 108
AlwI	GGATC	3 cut(s)	258, 399, 442
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	405
AsiGI	ACCGGT	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	108, 608
AvaI	CYCGRG	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	64, 108
BfaI	CTAG	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	31, 517
BmuI	ACTGGG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	502, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	22, 340, 372
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	223, 311, 401
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	128, 139
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	2 cut(s)	192, 534
Bsh1236I	CGCG	1 cut(s)	522
BshTI	ACCGGT	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	503, 585
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	64, 108
BsoBI	CYCGRG	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	5 cut(s)	263, 391, 413, 434, 568
BspACI	CCGC	2 cut(s)	123, 389
BspCNI	CTCAG	3 cut(s)	222, 310, 402
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	258, 399, 442
BsrFI	RCCGGY	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	502
BssMI	GATC	5 cut(s)	263, 391, 413, 434, 568
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	5 cut(s)	163, 441, 532, 561, 565
BstDEI	CTNAG	3 cut(s)	209, 297, 410
BstF5I	GGATG	3 cut(s)	22, 340, 372
BstFNI	CGCG	1 cut(s)	522
BstKTI	GATC	5 cut(s)	266, 394, 416, 437, 571
BstMAI	GTCTC	2 cut(s)	64, 108
BstMBI	GATC	5 cut(s)	263, 391, 413, 434, 568
BstNSI	RCATGY	1 cut(s)	443
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuI	GTATCC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	22, 340, 372
Cac8I	GCNNGC	5 cut(s)	163, 441, 532, 561, 565
Cfr10I	RCCGGY	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	370, 425
CspAI	ACCGGT	1 cut(s)	502
CviAII	CATG	2 cut(s)	440, 467
CviJI	RGCY	7 cut(s)	112, 165, 180, 196, 431, 460, 492
CviKI_1	RGCY	7 cut(s)	112, 165, 180, 196, 431, 460, 492
CviQI	GTAC	2 cut(s)	370, 425
DdeI	CTNAG	3 cut(s)	209, 297, 410
DpnI	GATC	5 cut(s)	265, 393, 415, 436, 570
DpnII	GATC	5 cut(s)	263, 391, 413, 434, 568
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	607
FaeI	CATG	2 cut(s)	443, 470
FaiI	YATR	4 cut(s)	8, 441, 468, 474
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FatI	CATG	2 cut(s)	439, 466
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	3 cut(s)	9, 347, 379
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	2 cut(s)	196, 538
HapII	CCGG	2 cut(s)	503, 585
Hin1II	CATG	2 cut(s)	443, 470
HinfI	GANTC	2 cut(s)	70, 88
HpaII	CCGG	2 cut(s)	503, 585
HphI	GGTGA	2 cut(s)	108, 608
Hpy166II	GTNNAC	2 cut(s)	518, 554
Hpy188I	TCNGA	4 cut(s)	19, 172, 260, 411
Hpy188III	TCNNGA	4 cut(s)	85, 107, 305, 401
Hpy8I	GTNNAC	2 cut(s)	518, 554
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	5 cut(s)	53, 378, 472, 530, 605
HpyF3I	CTNAG	3 cut(s)	209, 297, 410
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	443, 470
Kzo9I	GATC	5 cut(s)	263, 391, 413, 434, 568
LmnI	GCTCC	2 cut(s)	19, 185
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	31, 517
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	5 cut(s)	265, 393, 415, 436, 570
MboI	GATC	5 cut(s)	263, 391, 413, 434, 568
MboII	GAAGA	6 cut(s)	22, 135, 263, 272, 273, 340
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	3 cut(s)	64, 405, 579
MluI	ACGCGT	1 cut(s)	520
MnlI	CCTC	6 cut(s)	47, 146, 149, 157, 160, 218
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	3 cut(s)	483, 495, 610
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	2 cut(s)	503, 585
MvnI	CGCG	1 cut(s)	522
NdeII	GATC	5 cut(s)	263, 391, 413, 434, 568
NlaIII	CATG	2 cut(s)	443, 470
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	70, 88
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	295
PspFI	CCCAGC	2 cut(s)	192, 534
PspN4I	GGNNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	371, 426
RsaNI	GTAC	2 cut(s)	370, 425
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	483, 495, 610
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	5 cut(s)	263, 391, 413, 434, 568
SetI	ASST	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	31, 517
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	64, 405, 579
SsiI	CCGC	2 cut(s)	123, 389
SspMI	CTAG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	4 cut(s)	68, 86, 108, 353
TasI	AATT	3 cut(s)	64, 405, 579
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	70, 88
Tru1I	TTAA	3 cut(s)	483, 495, 610
Tru9I	TTAA	3 cut(s)	483, 495, 610
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	379
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.