AT1G51520

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002653
Physical Location & Seq
Forward (+)
19106687 .. 19109648
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51520.1

Sequence Viewer

Length: 1245 bp
ATGGATCCTGGCGACCCAACTTCAATAATCTTTTCAAAGATCAGAACTTTCGAACTTGAGAACGCTTCCAGAGTCATTGACTATTTTCTCTTGCAAGACATGGAACAAAGAGATTTGATTCGAATTGCTTTTGGTCCTGACTCTCTCATACAGACTTTCTGTCAGAAAGCTAAAGTCGATTTAGGTTTTTCCTCGAACGGTTTCTCGAGACCCATCAATATCCATGGCCAGTCATTGTCCTCGTCTTCTCCCAGAAATGGGTTCTTAGAGTTCTCGAGAAACCCTAGTAACCCTTTGTCTTCTTCGTTAACTTTGAACACACTCAGAGATAATAAGCCTAACTTCAATTCTAGTCCTTTTCGTGAAAGTTCATCACTTTTTGCCTCTTCTTCCGGCGATGAGCAGCAGCAACAACAATTCAGTAACAACTTTCTGTTCACAAACGACGAGGACCCATTTGCCAATTCTCACAAGAGGAGTTTCTCTGCTAACGATGCTTGTTTTGAGTCAGAGGAACCATGGTTTGGAGGAGGAAATGGTTGTCATCAATTTCCACAAGGCGGTTTAGTTGATGGTTTTGGTTCCTCTGGTGTCTTTGGATCGCCGAGTGAGATGGATTACATGCTTGAGGGGATGATGAGGATGAAGTTAGCTCAGCAAAAGAGCATGGTTGCTGCTCAGTTTATGGCGGCTTGTGGCTCTCCAATGTTGCATAGACACGGATCAGGACATTTTGGAGAAGAATGTGGTAACTATTTTAGTCAAGGAAGGCATGAAAGAGAGGATTCAGTCTCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTCAACCTATTTCAGAGATTTTGGACTTGTGGATGATGTGAGGATTCCATATCAGCAGCAAAGGATGTATGGGTTTGTAACTTTTGCTAAGGCTGAAACTGTGAGAACCATATTAGCTCGTGGAAACCCTCATTTCATATGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGAAAAATCCTTCAAAAGAGGCAGCAGCAACAACTACACGAGTTGTTGGAGAGAGGGAACTATTCACCTTCTTCAAGTCCGTCTGGAAAGGACTCGAGGGAACTATATGAATGTCGCTTAGGACCAAGGATGTTTTCAAAGAAGACACAGGAGATGTTGCGAAGAAAAACCGAGCAAGCTGATTTACAACATGCCATAGAAGTAGAACTCCAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

414

Amino Acids

46.87

Weight (kDa)

6.1

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 66 2.2e-23 AtC3H46 PABC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 849
AccB7I CCANNNNNTGG 1 cut(s) 524
AciI CCGC 2 cut(s) 561, 689
AclWI GGATC 3 cut(s) 12, 607, 730
AcoI YGGCCR 1 cut(s) 226
AcvI CACGTG 1 cut(s) 998
AcyI GRCGYC 1 cut(s) 846
AfiI CCNNNNNNNGG 4 cut(s) 257, 258, 524, 560
AflIII ACRYGT 1 cut(s) 997
AgsI TTSAA 7 cut(s) 24, 36, 316, 346, 1040, 1101, 1164
AhdI GACNNNNNGTC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 4 cut(s) 507, 539, 1144, 1176
AluBI AGCT 5 cut(s) 170, 653, 828, 965, 1205
AluI AGCT 5 cut(s) 170, 653, 828, 965, 1205
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 3 cut(s) 202, 796, 853
AlwI GGATC 3 cut(s) 12, 607, 730
Ama87I CYCGRG 3 cut(s) 205, 274, 1120
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 6 cut(s) 403, 406, 674, 904, 1048, 1051
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 134, 451, 1148
AsuHPI GGTGA 1 cut(s) 1083
AsuII TTCGAA 2 cut(s) 51, 121
AvaI CYCGRG 3 cut(s) 205, 274, 1120
AvaII GGWCC 3 cut(s) 134, 451, 1148
BalI TGGCCA 1 cut(s) 228
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 966, 1064
BbrPI CACGTG 1 cut(s) 998
BbsI GAAGAC 4 cut(s) 237, 291, 849, 1175
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 6 cut(s) 415, 418, 661, 916, 1060, 1063
BccI CCATC 4 cut(s) 221, 566, 607, 826
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 202, 796, 853
BfaI CTAG 2 cut(s) 285, 351
BisI GCNGC 7 cut(s) 404, 407, 675, 690, 905, 1049, 1052
BlpI GCTNAGC 1 cut(s) 654
BlsI GCNGC 7 cut(s) 405, 408, 676, 691, 906, 1050, 1053
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 3 cut(s) 134, 451, 1148
BmeRI GACNNNNNGTC 1 cut(s) 159
BmeT110I CYCGRG 3 cut(s) 205, 274, 1120
BmgT120I GGNCC 3 cut(s) 134, 451, 1148
BmiI GGNNCC 4 cut(s) 6, 453, 516, 583
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 4 cut(s) 237, 291, 849, 1175
Bpu10I CCTNAGC 2 cut(s) 936, 1144
Bpu1102I GCTNAGC 1 cut(s) 654
Bpu14I TTCGAA 2 cut(s) 51, 121
BpuEI CTTGAG 2 cut(s) 77, 647
BsaAI YACGTR 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 846
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 223, 518, 1151
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 258, 524, 560
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 223, 518, 1151
BseGI GGATG 5 cut(s) 639, 648, 886, 918, 1161
BseLI CCNNNNNNNGG 4 cut(s) 257, 258, 524, 560
BseMII CTCAG 3 cut(s) 337, 668, 692
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 490, 543
BseXI GCAGC 6 cut(s) 415, 418, 661, 916, 1060, 1063
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 1005
BsiHKCI CYCGRG 3 cut(s) 205, 274, 1120
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 257, 258, 524, 560
BsmAI GTCTC 3 cut(s) 202, 796, 853
BsmBI CGTCTC 1 cut(s) 853
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 3 cut(s) 205, 274, 1120
Bsp119I TTCGAA 2 cut(s) 51, 121
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp143I GATC 4 cut(s) 4, 39, 599, 722
Bsp1720I GCTNAGC 1 cut(s) 654
Bsp19I CCATGG 2 cut(s) 223, 518
BspACI CCGC 2 cut(s) 561, 689
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 3 cut(s) 336, 667, 691
BspLI GGNNCC 4 cut(s) 6, 453, 516, 583
BspPI GGATC 3 cut(s) 12, 607, 730
BspT104I TTCGAA 2 cut(s) 51, 121
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 223, 518, 1151
BssMI GATC 4 cut(s) 4, 39, 599, 722
BssNI GRCGYC 1 cut(s) 846
BssSI CACGAG 2 cut(s) 966, 1064
BssT1I CCWWGG 3 cut(s) 223, 518, 1151
Bst2BI CACGAG 2 cut(s) 966, 1064
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 200, 949
Bst6I CTCTTC 1 cut(s) 391
BstACI GRCGYC 1 cut(s) 846
BstBAI YACGTR 1 cut(s) 998
BstBI TTCGAA 2 cut(s) 51, 121
BstC8I GCNNGC 1 cut(s) 1203
BstDEI CTNAG 6 cut(s) 265, 323, 654, 678, 936, 1144
BstDSI CCRYGG 2 cut(s) 223, 518
BstF5I GGATG 5 cut(s) 639, 648, 886, 918, 1161
BstKTI GATC 4 cut(s) 7, 42, 602, 725
BstMAI GTCTC 3 cut(s) 202, 796, 853
BstMBI GATC 4 cut(s) 4, 39, 599, 722
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 2 cut(s) 625, 1220
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 6 cut(s) 415, 418, 661, 916, 1060, 1063
BstV2I GAAGAC 4 cut(s) 237, 291, 849, 1175
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 223, 518
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 5 cut(s) 639, 648, 886, 918, 1161
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 1 cut(s) 1203
Cfr13I GGNCC 3 cut(s) 134, 451, 1148
CviAII CATG 7 cut(s) 100, 224, 519, 622, 667, 773, 1217
DdeI CTNAG 6 cut(s) 265, 323, 654, 678, 936, 1144
DpnI GATC 4 cut(s) 6, 41, 601, 724
DpnII GATC 4 cut(s) 4, 39, 599, 722
DriI GACNNNNNGTC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 391
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 223, 518, 1151
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 134, 451, 1148
Eco72I CACGTG 1 cut(s) 998
Eco88I CYCGRG 3 cut(s) 205, 274, 1120
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 223, 518, 1151
ErhI CCWWGG 3 cut(s) 223, 518, 1151
Esp3I CGTCTC 1 cut(s) 853
FaeI CATG 7 cut(s) 103, 227, 522, 625, 670, 776, 1220
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 7 cut(s) 99, 223, 518, 621, 666, 772, 1216
FauNDI CATATG 1 cut(s) 986
Fnu4HI GCNGC 7 cut(s) 404, 407, 675, 690, 905, 1049, 1052
FokI GGATG 5 cut(s) 646, 655, 893, 925, 1168
Fsp4HI GCNGC 7 cut(s) 404, 407, 675, 690, 905, 1049, 1052
FspBI CTAG 2 cut(s) 285, 351
GluI GCNGC 7 cut(s) 404, 407, 675, 690, 905, 1049, 1052
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 7 cut(s) 103, 227, 522, 625, 670, 776, 1220
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 8 cut(s) 72, 118, 140, 506, 785, 892, 992, 1118
HpaI GTTAAC 1 cut(s) 309
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 1083
Hpy166II GTNNAC 2 cut(s) 309, 438
Hpy188I TCNGA 6 cut(s) 44, 165, 326, 511, 823, 863
Hpy188III TCNNGA 9 cut(s) 69, 137, 205, 207, 274, 276, 362, 726, 1110
Hpy8I GTNNAC 2 cut(s) 309, 438
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 762, 841, 1046, 1104
HpyCH4III ACNGT 2 cut(s) 200, 949
HpyCH4IV ACGT 2 cut(s) 846, 997
HpyCH4V TGCA 2 cut(s) 94, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 6 cut(s) 265, 323, 654, 678, 936, 1144
HpySE526I ACGT 2 cut(s) 846, 997
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 7 cut(s) 103, 227, 522, 625, 670, 776, 1220
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 4, 39, 599, 722
LmnI GCTCC 1 cut(s) 833
Lsp1109I GCAGC 6 cut(s) 415, 418, 661, 916, 1060, 1063
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 285, 351
MaeII ACGT 2 cut(s) 846, 997
MaeIII GTNAC 5 cut(s) 287, 422, 749, 925, 989
MalI GATC 4 cut(s) 6, 41, 601, 724
MboI GATC 4 cut(s) 4, 39, 599, 722
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 5 cut(s) 123, 346, 416, 463, 548
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 5 cut(s) 81, 134, 515, 986, 1112
MmeI TCCRAC 1 cut(s) 1053
Mox20I TGGCCA 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 308, 1008
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 494
NcoI CCATGG 2 cut(s) 223, 518
NdeI CATATG 1 cut(s) 986
NdeII GATC 4 cut(s) 4, 39, 599, 722
NlaIII CATG 7 cut(s) 103, 227, 522, 625, 670, 776, 1220
NlaIV GGNNCC 4 cut(s) 6, 453, 516, 583
NmeAIII GCCGAG 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 989
NspI RCATGY 2 cut(s) 625, 1220
NspV TTCGAA 2 cut(s) 51, 121
PaeR7I CTCGAG 3 cut(s) 205, 274, 1120
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 118, 785, 892
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 7 cut(s) 405, 408, 676, 691, 906, 1050, 1053
PleI GAGTC 5 cut(s) 80, 134, 514, 986, 1112
PmaCI CACGTG 1 cut(s) 998
PmlI CACGTG 1 cut(s) 998
PpsI GAGTC 5 cut(s) 80, 134, 514, 986, 1112
Ppu21I YACGTR 1 cut(s) 998
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 7
PspCI CACGTG 1 cut(s) 998
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 4 cut(s) 6, 453, 516, 583
PspPI GGNCC 3 cut(s) 134, 451, 1148
PspPPI RGGWCCY 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 1120
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 2 cut(s) 308, 1008
SatI GCNGC 7 cut(s) 404, 407, 675, 690, 905, 1049, 1052
Sau3AI GATC 4 cut(s) 4, 39, 599, 722
Sau96I GGNCC 3 cut(s) 134, 451, 1148
SchI GAGTC 5 cut(s) 81, 134, 515, 986, 1112
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 1 cut(s) 484
Sfr274I CTCGAG 3 cut(s) 205, 274, 1120
SfuI TTCGAA 2 cut(s) 51, 121
SinI GGWCC 3 cut(s) 134, 451, 1148
SlaI CTCGAG 3 cut(s) 205, 274, 1120
SmlI CTYRAG 5 cut(s) 56, 205, 274, 626, 1120
SmoI CTYRAG 5 cut(s) 56, 205, 274, 626, 1120
Sse9I AATT 5 cut(s) 123, 346, 416, 463, 548
SsiI CCGC 2 cut(s) 561, 689
SspMI CTAG 2 cut(s) 285, 351
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 3 cut(s) 223, 518, 1151
TaaI ACNGT 2 cut(s) 200, 949
TaiI ACGT 2 cut(s) 849, 1000
TaqI TCGA 7 cut(s) 51, 121, 177, 194, 206, 275, 1121
TasI AATT 5 cut(s) 123, 346, 416, 463, 548
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 3 cut(s) 118, 785, 892
Tru1I TTAA 2 cut(s) 308, 1008
Tru9I TTAA 2 cut(s) 308, 1008
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 6 cut(s) 403, 406, 674, 904, 1048, 1051
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 6 cut(s) 360, 659, 789, 855, 973, 1149
TspGWI ACGGA 2 cut(s) 735, 1095
TspRI CASTG 1 cut(s) 841
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 3 cut(s) 134, 451, 1148
XceI RCATGY 2 cut(s) 625, 1220
XhoI CTCGAG 3 cut(s) 205, 274, 1120
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 2 cut(s) 285, 351
ZraI GACGTC 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.