Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002653

Physical Location & Seq

Genomic Coordinates Reverse (-)

55204044 .. 55208599

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGGTTCTTTACAGTATGAAGTCACGAACCTACTGTTCGGAAAGATCAAGGCTTTGGAGCCTGAAAATGCCATCAAAATCATGGGCTATCTTCTCATACAAGATCTTGGCGAGAACGATTTGATGCGCCTGGCTTATGGCCCAGATACCCTCTTGCACTCTCTGATTCTCAGAGCCAAAATCCAGTTGGGACTTTCCTCCAACACTTCGTCATCTTCCACCCCATCTTCTCCTTCCCCTCTAAACCCCATAGCCAGACCCACCAGCGCCAGCAACCCATTCTCACAGTCCTCCCCCAGAATCCCAAACGGTGCTTTTGACTTTCCCAAAAACCCATCTTCTCCTTCCTCCAATTCCTGGCCTCTTTCTGCCTTCCCCAACAACTCCATTAGCCCCAAGTCCAGTCCTCTGCTCTCTTACGACAATATCCGGGCCGGCGCCGGAGCCGGCTCGGTCCCACTTCCCTTGCATTCCAAACACTCCGGCAAGGACGGTGATGTTTGGTCCGGCACTGACCTCATTGACGAGCACCAACTCAGCGACTACTTGTCTTTCCTCAATGACACCTCCTCCTCTTCCAGGCCCGACGATTTCATTGATCCCCGGCTCGAATTGGGCCACGGGGTTCCCGACTGGGCTCACTCTCTCAACAATGGCGACGCCCACTTGCACAGGAGGAGCTATTCCGCCAGTGACGCCTGTTTCGGGACCGAAGACTCTGCCCTGGGTGGCGGCTTCAAGCCCTGCCTCTACTTTGCTAGAGGGTTTTGCAAGAATGGGAGCAACTGCAAGTTTGTGCATGGCGGTTTCGGCGATTCGGTGGATGCCGGTGCCACTGGTGGTGGCGGCATTGTGGGCTCCCCGAGTAAGTTCGATGGTTTCGAGCAGCTACAGCATGAGGAGATGCTGAGGTTGAAGGCTGCTGCCCATCAACAGAGATTAGCTGCTGCTGCTTCTCAGTTTATGGCTGGAGGAGGCCCATCTTCTCCTTACAACAAGTATATGAATTTCCTCCTGCAACAGCAAAATGATCCCCAAAGAGCTGCGGCAATCATGATGGGGGAAGAATTTTACAAGTATGGGCGGTGCCGACCTGAAAGGAACGACCTTTTGGCAATGGCTTCTGTTGAAAAGGCCACCTCGGCTTCCAGGCAGATCTACTTGACATTCCCAGCTGAGAGCACCTTTAGAGATGAAGATGTTTCGGAATACTTCAGCAAGTATGGGCCAGTTCAAGATGTACGGATTCCATATCAGCAGAAAAGAATGTTTGGGTTTGTTACGTTTGTCTACCCAGAAACTGTCAGGCTCATATTGTCCAAAGGGAATCCACATTTTATATGTGAGTCGCGTGTTCTTGTCAAGCCCTATAAGGAGAAGGGAAAAGTCCTGGATAAGAGGCAACAACAGCATCAAGAGAGGGGGGAATTTTCACCATGTTTGAGCCCTGCTGGTCTTGATTCCAGAGATCCATATGAGCTCCAACTTGGAGGAAGAATGCTCTATGATACACAGGAAATGCTATTGAGAAGAAAATTGGAGGAGCAGGCTGAATTGCAGCAAGCCATTGAACTCCAAGGGAGAAGACTAATGAATCTGCAGCTGCCTGACTTCAAGAATAACCGCTTACCCCAGCACTATCTACCCCATCACTTGCGCAGTCTATCTGTGGGTGCTCCTGTTCCCTTGAGCCCTCAATCTCATGCCCAGATCAATCAAAACGTCATTCCATTTGATAGCATCAAACAAGAAGTTGCAGAAGGCCTTGGTGATATGCCACCTGCCTCATTTTCTATATCTGCCGTGGTTTCTGAGCAGCAACTTCAGAAGGAAGTCAACAATGCTAGTGATGAAGGCAAGGAGCAAGGCTCAGATGTTGAAGCTCATGATCTTCATGAACGTGTGGAGCAGGTCCTTCCTGATAGCCTTTTTGCGTCTCCTAAGCATTCAGGTGGAGATCATACTGCAGCAGGAGATCTTAATGAGACTGTCGTAGTTTCTGAAAACAACTCATCAACATCTGTCAATCCTGCTATTTGCACGGCTTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

684

Amino Acids

74.89

Weight (kDa)

5.8

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PABC_AtC3H46	PF23182	6 - 68	1.4e-27	AtC3H46 PABC domain
RRM_1	PF00076	397 - 440	1.7e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51520 AT1G51520 AT1G51530 AT1G51530 AT3G21100 AT3G21100 AT3G21100 AT3G21100 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440
fragaria_vesca	FvH4_3g28410 FvH4_3g28410 FvH4_3g28410
malus_domestica	MD00G1177200.v1.1 MD03G1171700.v1.1 MD11G1189200.v1.1
prunus_persica	Prupe.4G255200_v2.0.a1
pyrus_communis	pycom03g12880 pycom11g16560
rosa_chinensis	RchiOBHm_Chr5g0053291
rosa_laevigata	RLG00000034771
rosa_multiflora	Rmu_sc0001966.1_g000018
rosa_roxburghii	Rroxscaffold_1G00029030
rosa_rugosa	Rorug05G0267800 Rorug05G0267900
rosa_samantha	Rh5AG340200 Rh5BG350900 Rh5CG377100 Rh5DG364800
rosa_wichuraiana	Rw5G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1789
Acc16I	TGCGCA	1 cut(s)	1658
Acc36I	ACCTGC	2 cut(s)	1789, 1900
AccB1I	GGYRCC	3 cut(s)	437, 830, 1086
AccB7I	CCANNNNNTGG	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	1290
AccII	CGCG	1 cut(s)	1351
AciI	CCGC	7 cut(s)	687, 732, 804, 846, 1046, 1084, 1624
AclWI	GGATC	3 cut(s)	593, 1025, 1463
AcsI	RAATTY	3 cut(s)	1006, 1067, 1427
AcuI	CTGAAG	2 cut(s)	1198, 1808
AcyI	GRCGYC	3 cut(s)	438, 660, 696
AfaI	GTAC	1 cut(s)	1242
AfiI	CCNNNNNNNGG	3 cut(s)	357, 579, 705
AflIII	ACRYGT	1 cut(s)	1900
AgsI	TTSAA	7 cut(s)	739, 916, 1130, 1235, 1571, 1615, 1880
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	6 cut(s)	129, 356, 578, 723, 1148, 1389
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AluBI	AGCT	8 cut(s)	681, 889, 944, 1043, 1175, 1480, 1603, 1883
AluI	AGCT	8 cut(s)	681, 889, 944, 1043, 1175, 1480, 1603, 1883
Alw21I	GWGCWC	4 cut(s)	531, 1184, 1482, 1678
Alw26I	GTCTC	2 cut(s)	1941, 1979
AlwI	GGATC	3 cut(s)	593, 1025, 1463
AlwNI	CAGNNNCTG	1 cut(s)	1301
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	9 cut(s)	139, 359, 432, 581, 616, 976, 1134, 1226, 1762
ApoI	RAATTY	3 cut(s)	1006, 1067, 1427
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	4 cut(s)	129, 269, 440, 1659
AsuC2I	CCSGG	2 cut(s)	431, 604
AsuHPI	GGTGA	3 cut(s)	506, 1425, 1781
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	4 cut(s)	454, 504, 708, 1912
BanI	GGYRCC	3 cut(s)	437, 830, 1086
BanII	GRGCYC	5 cut(s)	640, 860, 1448, 1482, 1694
BbsI	GAAGAC	2 cut(s)	720, 1591
Bbv12I	GWGCWC	4 cut(s)	531, 1184, 1482, 1678
BbvCI	CCTCAGC	1 cut(s)	908
BccI	CCATC	8 cut(s)	80, 232, 343, 869, 936, 988, 1051, 1656
BceAI	ACGGC	1 cut(s)	1787
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	6 cut(s)	131, 358, 580, 725, 1150, 1391
BcnI	CCSGG	2 cut(s)	431, 604
BcoDI	GTCTC	2 cut(s)	1941, 1979
BfaI	CTAG	2 cut(s)	759, 1845
BfmI	CTRYAG	3 cut(s)	890, 1598, 1965
BfoI	RGCGCY	2 cut(s)	270, 441
BfuAI	ACCTGC	2 cut(s)	1789, 1900
BglI	GCCNNNNNGGC	1 cut(s)	1142
BglII	AGATCT	3 cut(s)	103, 1155, 1975
Bme1390I	CCNGG	8 cut(s)	131, 358, 431, 580, 604, 725, 1150, 1391
Bme18I	GGWCC	4 cut(s)	454, 504, 708, 1912
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmeT110I	CYCGRG	1 cut(s)	862
BmiI	GGNNCC	9 cut(s)	60, 439, 445, 456, 627, 709, 832, 859, 1088
BmrFI	CCNGG	8 cut(s)	131, 358, 431, 580, 604, 725, 1150, 1391
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	5 cut(s)	114, 814, 894, 1420, 1749
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	720, 1591
BplI	GAGNNNNNCTC	2 cut(s)	1853, 1885
BpmI	CTGGAG	1 cut(s)	990
Bpu10I	CCTNAGC	2 cut(s)	908, 1941
BpuEI	CTTGAG	1 cut(s)	1708
BpuMI	CCSGG	2 cut(s)	431, 604
BsaHI	GRCGYC	3 cut(s)	438, 660, 696
BsaJI	CCNNGG	8 cut(s)	602, 619, 723, 724, 1140, 1576, 1765, 1803
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 579, 705
Bse118I	RCCGGY	3 cut(s)	434, 446, 827
Bse1I	ACTGG	6 cut(s)	184, 402, 638, 690, 841, 1229
Bse3DI	GCAATG	1 cut(s)	1122
BseBI	CCWGG	6 cut(s)	131, 358, 580, 725, 1150, 1391
BseDI	CCNNGG	8 cut(s)	602, 619, 723, 724, 1140, 1576, 1765, 1803
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	357, 579, 705
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	7 cut(s)	184, 550, 899, 971, 1167, 1803, 1884
BseNI	ACTGG	6 cut(s)	184, 402, 638, 690, 841, 1229
BseRI	GAGGAG	6 cut(s)	559, 562, 691, 914, 987, 1556
BseYI	CCCAGC	2 cut(s)	1171, 1632
Bsh1236I	CGCG	1 cut(s)	1351
BshFI	GGCC	9 cut(s)	141, 361, 434, 583, 618, 978, 1136, 1228, 1764
BshNI	GGYRCC	3 cut(s)	437, 830, 1086
BsiHKAI	GWGCWC	4 cut(s)	531, 1184, 1482, 1678
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	8 cut(s)	430, 435, 441, 447, 483, 507, 604, 828
BslFI	GGGAC	3 cut(s)	204, 440, 721
BslI	CCNNNNNNNGG	3 cut(s)	357, 579, 705
BsmAI	GTCTC	2 cut(s)	1941, 1979
BsmBI	CGTCTC	1 cut(s)	1941
BsmFI	GGGAC	3 cut(s)	204, 440, 721
BsmI	GAATGC	3 cut(s)	469, 1503, 1945
BsnI	GGCC	9 cut(s)	141, 361, 434, 583, 618, 978, 1136, 1228, 1764
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	8 cut(s)	531, 640, 860, 1184, 1448, 1482, 1678, 1694
BspACI	CCGC	7 cut(s)	687, 732, 804, 846, 1046, 1084, 1624
BspANI	GGCC	9 cut(s)	141, 361, 434, 583, 618, 978, 1136, 1228, 1764
BspCNI	CTCAG	7 cut(s)	183, 549, 900, 970, 1168, 1804, 1883
BspFNI	CGCG	1 cut(s)	1351
BspHI	TCATGA	3 cut(s)	1053, 1885, 1894
BspLI	GGNNCC	9 cut(s)	60, 439, 445, 456, 627, 709, 832, 859, 1088
BspMAI	CTGCAG	2 cut(s)	1602, 1969
BspMI	ACCTGC	2 cut(s)	1789, 1900
BspPI	GGATC	3 cut(s)	593, 1025, 1463
BspT107I	GGYRCC	3 cut(s)	437, 830, 1086
BsrDI	GCAATG	1 cut(s)	1122
BsrFI	RCCGGY	3 cut(s)	434, 446, 827
BsrI	ACTGG	6 cut(s)	184, 402, 638, 690, 841, 1229
BssAI	RCCGGY	3 cut(s)	434, 446, 827
BssECI	CCNNGG	8 cut(s)	602, 619, 723, 724, 1140, 1576, 1765, 1803
BssNI	GRCGYC	3 cut(s)	438, 660, 696
BssT1I	CCWWGG	2 cut(s)	1576, 1765
Bst2UI	CCWGG	6 cut(s)	131, 358, 580, 725, 1150, 1391
Bst4CI	ACNGT	7 cut(s)	15, 36, 288, 311, 494, 1303, 1990
Bst6I	CTCTTC	1 cut(s)	580
BstACI	GRCGYC	3 cut(s)	438, 660, 696
BstC8I	GCNNGC	5 cut(s)	271, 436, 448, 1548, 1563
BstDEI	CTNAG	9 cut(s)	170, 536, 908, 957, 1176, 1812, 1870, 1941, 2049
BstDSI	CCRYGG	2 cut(s)	619, 1803
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	1 cut(s)	1351
BstH2I	RGCGCY	2 cut(s)	270, 441
BstHHI	GCGC	4 cut(s)	129, 269, 440, 1659
BstMAI	GTCTC	2 cut(s)	1941, 1979
BstMWI	GCNNNNNNNGC	7 cut(s)	695, 810, 855, 892, 950, 1142, 1408
BstNI	CCWGG	6 cut(s)	131, 358, 580, 725, 1150, 1391
BstSCI	CCNGG	8 cut(s)	129, 356, 429, 578, 602, 723, 1148, 1389
BstSFI	CTRYAG	3 cut(s)	890, 1598, 1965
BstUI	CGCG	1 cut(s)	1351
BstV2I	GAAGAC	2 cut(s)	720, 1591
BstX2I	RGATCY	4 cut(s)	103, 1155, 1468, 1975
BstYI	RGATCY	4 cut(s)	103, 1155, 1468, 1975
BsuRI	GGCC	9 cut(s)	141, 361, 434, 583, 618, 978, 1136, 1228, 1764
BtgI	CCRYGG	2 cut(s)	619, 1803
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	510, 697, 834
BveI	ACCTGC	2 cut(s)	1789, 1900
Cac8I	GCNNGC	5 cut(s)	271, 436, 448, 1548, 1563
CaiI	CAGNNNCTG	1 cut(s)	1301
CciI	TCATGA	3 cut(s)	1053, 1885, 1894
CfoI	GCGC	4 cut(s)	129, 269, 440, 1659
Cfr10I	RCCGGY	3 cut(s)	434, 446, 827
CseI	GACGC	3 cut(s)	668, 704, 1923
Csp6I	GTAC	1 cut(s)	1241
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	8 cut(s)	82, 800, 896, 1054, 1437, 1703, 1886, 1895
CviQI	GTAC	1 cut(s)	1241
DdeI	CTNAG	9 cut(s)	170, 536, 908, 957, 1176, 1812, 1870, 1941, 2049
DinI	GGCGCC	1 cut(s)	439
DriI	GACNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	580
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	1480
Eco130I	CCWWGG	2 cut(s)	1576, 1765
Eco147I	AGGCCT	1 cut(s)	1764
Eco24I	GRGCYC	5 cut(s)	640, 860, 1448, 1482, 1694
Eco47I	GGWCC	4 cut(s)	454, 504, 708, 1912
Eco53kI	GAGCTC	1 cut(s)	1480
Eco57I	CTGAAG	2 cut(s)	1198, 1808
Eco88I	CYCGRG	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	1480
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	1912
EcoRII	CCWGG	6 cut(s)	129, 356, 578, 723, 1148, 1389
EcoT14I	CCWWGG	2 cut(s)	1576, 1765
EcoT38I	GRGCYC	5 cut(s)	640, 860, 1448, 1482, 1694
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	1576, 1765
Esp3I	CGTCTC	1 cut(s)	1941
FaeI	CATG	8 cut(s)	85, 803, 899, 1057, 1440, 1706, 1889, 1898
FaqI	GGGAC	3 cut(s)	204, 440, 721
FatI	CATG	8 cut(s)	81, 799, 895, 1053, 1436, 1702, 1885, 1894
FauNDI	CATATG	1 cut(s)	1474
FblI	GTMKAC	1 cut(s)	1290
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	5 cut(s)	640, 860, 1448, 1482, 1694
FspBI	CTAG	2 cut(s)	759, 1845
FspI	TGCGCA	1 cut(s)	1658
GlaI	GCGC	4 cut(s)	128, 268, 439, 1658
GsaI	CCCAGC	2 cut(s)	1175, 1636
GsuI	CTGGAG	1 cut(s)	990
HaeII	RGCGCY	2 cut(s)	270, 441
HaeIII	GGCC	9 cut(s)	141, 361, 434, 583, 618, 978, 1136, 1228, 1764
HapII	CCGG	8 cut(s)	430, 435, 441, 447, 483, 507, 604, 828
HgaI	GACGC	3 cut(s)	668, 704, 1923
HhaI	GCGC	4 cut(s)	129, 269, 440, 1659
Hin1I	GRCGYC	3 cut(s)	438, 660, 696
Hin1II	CATG	8 cut(s)	85, 803, 899, 1057, 1440, 1706, 1889, 1898
Hin6I	GCGC	4 cut(s)	127, 267, 438, 1657
HinP1I	GCGC	4 cut(s)	127, 267, 438, 1657
HincII	GTYRAC	1 cut(s)	1837
HindII	GTYRAC	1 cut(s)	1837
HinfI	GANTC	9 cut(s)	166, 300, 716, 815, 1246, 1327, 1346, 1460, 1594
HpaII	CCGG	8 cut(s)	430, 435, 441, 447, 483, 507, 604, 828
HphI	GGTGA	3 cut(s)	506, 1425, 1781
Hpy166II	GTNNAC	2 cut(s)	1291, 1837
Hpy188I	TCNGA	8 cut(s)	41, 165, 173, 1207, 1813, 1827, 1873, 2002
Hpy8I	GTNNAC	2 cut(s)	1291, 1837
Hpy99I	CGWCG	2 cut(s)	590, 662
HpyAV	CCTTC	9 cut(s)	243, 354, 382, 910, 1372, 1754, 1822, 1847, 1925
HpyCH4III	ACNGT	7 cut(s)	15, 36, 288, 311, 494, 1303, 1990
HpyCH4IV	ACGT	3 cut(s)	1283, 1722, 1900
HpyF10VI	GCNNNNNNNGC	7 cut(s)	695, 810, 855, 892, 950, 1142, 1408
HpyF3I	CTNAG	9 cut(s)	170, 536, 908, 957, 1176, 1812, 1870, 1941, 2049
HpySE526I	ACGT	3 cut(s)	1283, 1722, 1900
Hsp92I	GRCGYC	3 cut(s)	438, 660, 696
Hsp92II	CATG	8 cut(s)	85, 803, 899, 1057, 1440, 1706, 1889, 1898
HspAI	GCGC	4 cut(s)	127, 267, 438, 1657
KasI	GGCGCC	1 cut(s)	437
KroI	GCCGGC	2 cut(s)	434, 446
KroNI	GCCGGC	2 cut(s)	436, 448
LweI	GCATC	5 cut(s)	114, 814, 894, 1420, 1749
MaeI	CTAG	2 cut(s)	759, 1845
MaeII	ACGT	3 cut(s)	1283, 1722, 1900
MaeIII	GTNAC	3 cut(s)	22, 692, 1279
MflI	RGATCY	4 cut(s)	103, 1155, 1468, 1975
MhlI	GDGCHC	8 cut(s)	531, 640, 860, 1184, 1448, 1482, 1678, 1694
MluCI	AATT	7 cut(s)	352, 611, 1006, 1067, 1427, 1535, 1553
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	710, 1355
MmeI	TCCRAC	2 cut(s)	225, 1507
MroNI	GCCGGC	2 cut(s)	434, 446
MseI	TTAA	1 cut(s)	1980
MslI	CAYNNNNRTG	2 cut(s)	1899, 1950
MspA1I	CMGCKG	2 cut(s)	1175, 1603
MspI	CCGG	8 cut(s)	430, 435, 441, 447, 483, 507, 604, 828
MspR9I	CCNGG	8 cut(s)	131, 358, 431, 580, 604, 725, 1150, 1391
Mva1269I	GAATGC	3 cut(s)	469, 1503, 1945
MvaI	CCWGG	6 cut(s)	131, 358, 580, 725, 1150, 1391
MvnI	CGCG	1 cut(s)	1351
MwoI	GCNNNNNNNGC	7 cut(s)	695, 810, 855, 892, 950, 1142, 1408
NaeI	GCCGGC	2 cut(s)	436, 448
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	431, 604
NdeI	CATATG	1 cut(s)	1474
NgoMIV	GCCGGC	2 cut(s)	434, 446
NlaIII	CATG	8 cut(s)	85, 803, 899, 1057, 1440, 1706, 1889, 1898
NlaIV	GGNNCC	9 cut(s)	60, 439, 445, 456, 627, 709, 832, 859, 1088
NmeAIII	GCCGAG	1 cut(s)	1121
NmuCI	GTSAC	2 cut(s)	22, 692
NsbI	TGCGCA	1 cut(s)	1658
PagI	TCATGA	3 cut(s)	1053, 1885, 1894
PaqCI	CACCTGC	1 cut(s)	1789
PasI	CCCWGGG	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	1764
PcsI	WCGNNNNNNNCGW	2 cut(s)	627, 879
PctI	GAATGC	3 cut(s)	469, 1503, 1945
PdiI	GCCGGC	2 cut(s)	436, 448
PfeI	GAWTC	7 cut(s)	166, 300, 815, 1246, 1327, 1460, 1594
PflMI	CCANNNNNTGG	1 cut(s)	357
PfoI	TCCNGGA	1 cut(s)	1389
PleI	GAGTC	2 cut(s)	710, 1354
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	2 cut(s)	710, 1354
PpuMI	RGGWCCY	1 cut(s)	1912
Psp124BI	GAGCTC	1 cut(s)	1482
Psp5II	RGGWCCY	1 cut(s)	1912
Psp6I	CCWGG	6 cut(s)	129, 356, 578, 723, 1148, 1389
PspFI	CCCAGC	2 cut(s)	1171, 1632
PspGI	CCWGG	6 cut(s)	129, 356, 578, 723, 1148, 1389
PspN4I	GGNNCC	9 cut(s)	60, 439, 445, 456, 627, 709, 832, 859, 1088
PspPPI	RGGWCCY	1 cut(s)	1912
PstI	CTGCAG	2 cut(s)	1602, 1969
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	4 cut(s)	103, 1155, 1468, 1975
PvuII	CAGCTG	2 cut(s)	1175, 1603
RsaI	GTAC	1 cut(s)	1242
RsaNI	GTAC	1 cut(s)	1241
RseI	CAYNNNNRTG	2 cut(s)	1899, 1950
SacI	GAGCTC	1 cut(s)	1482
SaqAI	TTAA	1 cut(s)	1980
SchI	GAGTC	2 cut(s)	710, 1355
ScrFI	CCNGG	8 cut(s)	131, 358, 431, 580, 604, 725, 1150, 1391
SduI	GDGCHC	8 cut(s)	531, 640, 860, 1184, 1448, 1482, 1678, 1694
SfaNI	GCATC	5 cut(s)	114, 814, 894, 1420, 1749
SfcI	CTRYAG	3 cut(s)	890, 1598, 1965
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	4 cut(s)	454, 504, 708, 1912
SmiMI	CAYNNNNRTG	2 cut(s)	1899, 1950
SmlI	CTYRAG	1 cut(s)	1687
SmoI	CTYRAG	1 cut(s)	1687
Sse9I	AATT	7 cut(s)	352, 611, 1006, 1067, 1427, 1535, 1553
SseBI	AGGCCT	1 cut(s)	1764
SsiI	CCGC	7 cut(s)	687, 732, 804, 846, 1046, 1084, 1624
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	2 cut(s)	759, 1845
SstI	GAGCTC	1 cut(s)	1482
StuI	AGGCCT	1 cut(s)	1764
StyD4I	CCNGG	8 cut(s)	129, 356, 429, 578, 602, 723, 1148, 1389
StyI	CCWWGG	2 cut(s)	1576, 1765
TaaI	ACNGT	7 cut(s)	15, 36, 288, 311, 494, 1303, 1990
TaiI	ACGT	3 cut(s)	1286, 1725, 1903
TaqI	TCGA	3 cut(s)	609, 873, 882
TaqII	GACCGA	2 cut(s)	442, 725
TasI	AATT	7 cut(s)	352, 611, 1006, 1067, 1427, 1535, 1553
TauI	GCSGC	3 cut(s)	735, 849, 1049
TfiI	GAWTC	7 cut(s)	166, 300, 815, 1246, 1327, 1460, 1594
Tru1I	TTAA	1 cut(s)	1980
Tru9I	TTAA	1 cut(s)	1980
TscAI	CASTG	3 cut(s)	517, 697, 841
TseFI	GTSAC	2 cut(s)	22, 692
Tsp45I	GTSAC	2 cut(s)	22, 692
TspDTI	ATGAA	8 cut(s)	33, 583, 1019, 1209, 1607, 1866, 1883, 1911
TspGWI	ACGGA	1 cut(s)	1258
TspRI	CASTG	3 cut(s)	517, 697, 841
Van91I	CCANNNNNTGG	1 cut(s)	357
VpaK11BI	GGWCC	4 cut(s)	454, 504, 708, 1912
XagI	CCTNNNNNAGG	1 cut(s)	577
XapI	RAATTY	3 cut(s)	1006, 1067, 1427
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 184
XmiI	GTMKAC	1 cut(s)	1290
XspI	CTAG	2 cut(s)	759, 1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.