Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002653

Physical Location & Seq

Genomic Coordinates Reverse (-)

13704522 .. 13708391

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGGTTCCTATGAACTTACAAATGTACTCTTTTCGAAGATCAAAACCTTAGACCCAGAAAATGCCATCAAAATCATGGGTTATCTTCTCATTCAAGATCTTGCCGAGAAGGATTTGATTCGTTTGGCGTATGGTCCCGAGAGCCTTTTGCACTCGCTGATTCTGAGGGCTAAAATCCAGTTGGGACTTTCTTCAAACACTTCGTCCGCATCTTCCACTCCTTCCTCTCCTTCACCCCTAAATCCCATAGCCAGACCAACCAACGCCAACCCATTTTCTCAGTCCTCTCCTAGAACCCCAAACGGCTTTGACTTTGGGAACAACTCTTCTTCTCCCTCTTCGAATTCCTGGCCGCTTTCTGGCTTTCCAAACAACTCCATTAACCCAAAGGCAAGCCCTTTACTCTCTCATGACAATATCCGGGCCGGGTCCTTCTCCGTTCCAGTACATTCGCACCAGTTCAGTAAGGATGGTGGTGGTGGGGGCGGTGGTGATGGGTGGCCAGGAAGTGACCTCATCGACGAGCATCAACTCAGCGAGTACCTCTCCTTTCTCAACGAGTCCTCTTCCTCTTCGAGGCCGGGCGATTTCATTAATCCCAGGCTCGAATTGGGTCCGGGGGTTCCTGATTGGGTTCATTCGGTTAACAATGGCGACACCCATTTCCACAAAAGGAGCTATTCGGCCAGCGATGCTTGTCTCGGGTCCGAGGACCCTGCTTTGGGAGTTGGGTTCAAGCCATGTCTTTACTTTGCTAGAGGGTTTTGCAAGAATGGTAGCAATTGCAAGTTTGTGCATGGCGGTTTTGCTGATTCCCTGGACGCTCCTGGTGCTATTGTGGGGTCTCCCAGTAATCTTACTGGTTTCGAACAGCAGGAGGAGATGTTGCGGTTGAAAGTTGAGCAACAGAGATTGGCTGCTGCCTCTCAGTTCATGGCTGGAGGGTCGCCTTCTTCGTACAACAAGTACATGAATTTCCTATTGCAACAGCAGAATGACCCTCAGAGATTTGCGGCCATGATGATGGGGGAAGAACTTTTCAAGTTTGGGCGGTGTCGGCCTGATAGAAACGAACTTCTGGCAATGGCTTCTGTTGAAAAGGCGAACTCAGCTTCAAGACAGATCTACTTGACATTCCCAGCTGAGAGCACTTTTAGAGATGAAGATGTTTCAGAATACTTCAGCAGCAAGTTCGGGCCAGTTCAAGATGTCCGGATCCCATATCAGCAGAAGCGAATGTTTGGGTTCGTAACATTTGTCTTCCCAGAAACTGTCAGGCTTATATTGTCCAAAGGCAATCCTCATTTTATATGTGATTCACGTGTGCTCGTCAAGCCCTACAAGGAGAAGGGAAAAATCCTGGATAAGAGGCAACAACAACAACAGCATTTGGAGAGGGGAGAATTTTCATCATGTTTGAGCCCTGGTAGTCTTGATTCTAGAGATGCATATGATCTCCCACTTGGGGGAAGAATGTTCTACAGTACACAGGATGTGTTATTGAGAAGAAAGTTGGAGGAGCAGGCTGAACTGCAGCAAGCAATTGAACTCCAAGGCAGAAGACTTATGAGTCTGCAGCTCCCGGATTGGAAGAATGAACGCTTAACCCATCATCACCGCAGTCTATCTGTTGGTGCTCATGGTCCTCTGTTAAGCCCTCATTCCCATGCTCAGATCAATCAAAATATCCTTCCATTTGACAGCATGGAACAAGAAGTTGCAGAAGGCCACAGTGACATTCCAGCTGACTTAATCTCTGTGACTGGTGCAATTGCTGAGCAGCAGTCCCAGAAGGAAGATAATTTAGCTTTCATTCACAACAGTGGCAATGGGAATGGCAAAGAAAAGGAGCTAGTCTCCAACCTGGATGCTCCTAATCTTCATAAAAGTGCAGAGCAGGTCCTGCCTGATAGCCTCTTTGCTCGTACAAAATCTGCCGGAGATCATCATCTATCTGAGTTGTCAACCGCTGTGCCCGAAGTTAATGATACTGCCATTACTACTGAAAACAACACATTATCATCAGTCAATTCTGCTGGCTTCATTGCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

686

Amino Acids

75.11

Weight (kDa)

5.92

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51520 AT1G51520 AT1G51530 AT1G51530 AT3G21100 AT3G21100 AT3G21100 AT3G21100 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440 AT5G12440
fragaria_vesca	FvH4_3g28410 FvH4_3g28410 FvH4_3g28410
malus_domestica	MD00G1177200.v1.1 MD03G1171700.v1.1 MD11G1189200.v1.1
prunus_persica	Prupe.4G255200_v2.0.a1
pyrus_communis	pycom03g12880 pycom11g16560
rosa_chinensis	RchiOBHm_Chr5g0053291
rosa_laevigata	RLG00000034771
rosa_multiflora	Rmu_sc0001966.1_g000018
rosa_roxburghii	Rroxscaffold_1G00029030
rosa_rugosa	Rorug05G0267800 Rorug05G0267900
rosa_samantha	Rh5AG340200 Rh5BG350900 Rh5CG377100 Rh5DG364800
rosa_wichuraiana	Rw5G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1569
Acc36I	ACCTGC	1 cut(s)	1888
AccIII	TCCGGA	1 cut(s)	1212
AciI	CCGC	9 cut(s)	207, 353, 486, 801, 889, 1013, 1051, 1618, 1968
AclWI	GGATC	2 cut(s)	1210, 1223
AcoI	YGGCCR	4 cut(s)	350, 500, 684, 1014
AcsI	RAATTY	3 cut(s)	343, 973, 1403
AcuI	CTGAAG	1 cut(s)	1165
AcvI	CACGTG	1 cut(s)	1322
AfaI	GTAC	7 cut(s)	27, 447, 542, 959, 968, 1486, 1927
AfiI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1465, 1466
AflIII	ACRYGT	1 cut(s)	1321
AgsI	TTSAA	9 cut(s)	95, 195, 736, 895, 1042, 1097, 1116, 1205, 1547
AjnI	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1359, 1423, 1863
AleI	CACNNNNGTG	1 cut(s)	1821
AluBI	AGCT	7 cut(s)	678, 1112, 1142, 1579, 1745, 1808, 1852
AluI	AGCT	7 cut(s)	678, 1112, 1142, 1579, 1745, 1808, 1852
Alw21I	GWGCWC	3 cut(s)	1151, 1329, 1639
Alw26I	GTCTC	3 cut(s)	704, 849, 1861
AlwI	GGATC	2 cut(s)	1210, 1223
AlwNI	CAGNNNCTG	2 cut(s)	1271, 1903
Ama87I	CYCGRG	2 cut(s)	137, 701
Aor13HI	TCCGGA	1 cut(s)	1212
AoxI	GGCC	9 cut(s)	350, 423, 500, 578, 684, 1014, 1058, 1196, 1726
ApeKI	GCWGC	6 cut(s)	917, 920, 1185, 1534, 1576, 1780
ApoI	RAATTY	3 cut(s)	343, 973, 1403
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	594
AspS9I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1196, 1643, 1900
AsuC2I	CCSGG	5 cut(s)	422, 427, 582, 618, 1583
AsuHPI	GGTGA	3 cut(s)	225, 503, 1607
AsuII	TTCGAA	3 cut(s)	35, 341, 867
AvaI	CYCGRG	2 cut(s)	137, 701
AvaII	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1643, 1900
BaeGI	GKGCMC	1 cut(s)	1977
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	1215
BanII	GRGCYC	1 cut(s)	1424
BbrPI	CACGTG	1 cut(s)	1322
BbsI	GAAGAC	2 cut(s)	1252, 1567
Bbv12I	GWGCWC	3 cut(s)	1151, 1329, 1639
BbvI	GCAGC	6 cut(s)	904, 907, 1197, 1546, 1588, 1792
BccI	CCATC	5 cut(s)	74, 464, 488, 1018, 1617
BceAI	ACGGC	1 cut(s)	319
BcgI	CGANNNNNNTGC	4 cut(s)	698, 732, 1174, 1208
BciT130I	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1361, 1425, 1865
BcnI	CCSGG	5 cut(s)	422, 427, 582, 618, 1583
BcoDI	GTCTC	3 cut(s)	704, 849, 1861
BfaI	CTAG	4 cut(s)	291, 756, 1440, 1853
BfmI	CTRYAG	3 cut(s)	1480, 1532, 1574
BfuAI	ACCTGC	1 cut(s)	1888
BglII	AGATCT	2 cut(s)	97, 1122
BisI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1186, 1535, 1577, 1781
BlpI	GCTNAGC	1 cut(s)	1776
BlsI	GCNGC	8 cut(s)	354, 919, 922, 1015, 1187, 1536, 1578, 1782
Bme18I	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1643, 1900
BmeT110I	CYCGRG	2 cut(s)	137, 701
BmgT120I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1196, 1643, 1900
BmiI	GGNNCC	8 cut(s)	7, 136, 430, 615, 624, 706, 714, 1217
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	5 cut(s)	218, 535, 682, 1435, 1858
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	2 cut(s)	1252, 1567
BplI	GAGNNNNNCTC	4 cut(s)	530, 562, 1841, 1873
BpmI	CTGGAG	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	1776
Bpu14I	TTCGAA	3 cut(s)	35, 341, 867
BpuMI	CCSGG	5 cut(s)	422, 427, 582, 618, 1583
BsaAI	YACGTR	1 cut(s)	1322
BsaBI	GATNNNNATC	1 cut(s)	1947
BsaI	GGTCTC	1 cut(s)	849
BsaJI	CCNNGG	6 cut(s)	599, 617, 708, 816, 1423, 1552
BsaWI	WCCGGW	1 cut(s)	1212
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1465, 1466
Bse1I	ACTGG	7 cut(s)	178, 443, 457, 849, 865, 1199, 1768
Bse3DI	GCAATG	3 cut(s)	1089, 1834, 2043
Bse8I	GATNNNNATC	1 cut(s)	1947
BseAI	TCCGGA	1 cut(s)	1212
BseBI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1361, 1425, 1865
BseDI	CCNNGG	6 cut(s)	599, 617, 708, 816, 1423, 1552
BseGI	GGATG	3 cut(s)	475, 1498, 1873
BseJI	GATNNNNATC	1 cut(s)	1947
BseLI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1465, 1466
BseMI	GCAATG	3 cut(s)	1089, 1834, 2043
BseNI	ACTGG	7 cut(s)	178, 443, 457, 849, 865, 1199, 1768
BseRI	GAGGAG	2 cut(s)	893, 1532
BseSI	GKGCMC	1 cut(s)	1977
BseXI	GCAGC	6 cut(s)	904, 907, 1197, 1546, 1588, 1792
BseYI	CCCAGC	1 cut(s)	1138
BsgI	GTGCAG	1 cut(s)	1911
BshFI	GGCC	9 cut(s)	352, 425, 502, 580, 686, 1016, 1060, 1198, 1728
BsiHKAI	GWGCWC	3 cut(s)	1151, 1329, 1639
BsiHKCI	CYCGRG	2 cut(s)	137, 701
BsiSI	CCGG	7 cut(s)	421, 426, 581, 617, 1213, 1583, 1938
BslFI	GGGAC	3 cut(s)	120, 198, 1771
BslI	CCNNNNNNNGG	6 cut(s)	359, 576, 721, 722, 1465, 1466
BsmAI	GTCTC	3 cut(s)	704, 849, 1861
BsmFI	GGGAC	3 cut(s)	120, 198, 1771
BsnI	GGCC	9 cut(s)	352, 425, 502, 580, 686, 1016, 1060, 1198, 1728
Bso31I	GGTCTC	1 cut(s)	849
BsoBI	CYCGRG	2 cut(s)	137, 701
Bsp119I	TTCGAA	3 cut(s)	35, 341, 867
Bsp1286I	GDGCHC	5 cut(s)	1151, 1329, 1424, 1639, 1977
Bsp13I	TCCGGA	1 cut(s)	1212
Bsp143I	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
Bsp1720I	GCTNAGC	1 cut(s)	1776
BspACI	CCGC	9 cut(s)	207, 353, 486, 801, 889, 1013, 1051, 1618, 1968
BspANI	GGCC	9 cut(s)	352, 425, 502, 580, 686, 1016, 1060, 1198, 1728
BspEI	TCCGGA	1 cut(s)	1212
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	8 cut(s)	7, 136, 430, 615, 624, 706, 714, 1217
BspMAI	CTGCAG	2 cut(s)	1536, 1578
BspMI	ACCTGC	1 cut(s)	1888
BspPI	GGATC	2 cut(s)	1210, 1223
BspT104I	TTCGAA	3 cut(s)	35, 341, 867
BspTNI	GGTCTC	1 cut(s)	849
BsrDI	GCAATG	3 cut(s)	1089, 1834, 2043
BsrI	ACTGG	7 cut(s)	178, 443, 457, 849, 865, 1199, 1768
BssECI	CCNNGG	6 cut(s)	599, 617, 708, 816, 1423, 1552
BssMI	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
BssT1I	CCWWGG	1 cut(s)	1552
Bst2UI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1361, 1425, 1865
Bst4CI	ACNGT	4 cut(s)	1273, 1484, 1733, 1823
Bst6I	CTCTTC	4 cut(s)	331, 343, 571, 577
BstAPI	GCANNNNNTGC	1 cut(s)	1903
BstBAI	YACGTR	1 cut(s)	1322
BstBI	TTCGAA	3 cut(s)	35, 341, 867
BstC8I	GCNNGC	5 cut(s)	394, 688, 1524, 1539, 2038
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	475, 1498, 1873
BstKTI	GATC	7 cut(s)	42, 100, 1125, 1218, 1456, 1677, 1945
BstMAI	GTCTC	3 cut(s)	704, 849, 1861
BstMBI	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
BstMWI	GCNNNNNNNGC	6 cut(s)	692, 830, 1057, 1109, 1333, 1903
BstNI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1361, 1425, 1865
BstSFI	CTRYAG	3 cut(s)	1480, 1532, 1574
BstSLI	GKGCMC	1 cut(s)	1977
BstV1I	GCAGC	6 cut(s)	904, 907, 1197, 1546, 1588, 1792
BstV2I	GAAGAC	2 cut(s)	1252, 1567
BstX2I	RGATCY	3 cut(s)	97, 1122, 1215
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	3 cut(s)	97, 1122, 1215
BsuRI	GGCC	9 cut(s)	352, 425, 502, 580, 686, 1016, 1060, 1198, 1728
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	475, 1498, 1873
BtsIMutI	CAGTG	2 cut(s)	1738, 1828
BveI	ACCTGC	1 cut(s)	1888
Cac8I	GCNNGC	5 cut(s)	394, 688, 1524, 1539, 2038
CaiI	CAGNNNCTG	2 cut(s)	1271, 1903
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1196, 1643, 1900
CseI	GACGC	1 cut(s)	830
Csp6I	GTAC	7 cut(s)	26, 446, 541, 958, 967, 1485, 1926
CviQI	GTAC	7 cut(s)	26, 446, 541, 958, 967, 1485, 1926
DpnI	GATC	7 cut(s)	41, 99, 1124, 1217, 1455, 1676, 1944
DpnII	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
DrdI	GACNNNNNNGTC	1 cut(s)	1569
DseDI	GACNNNNNNGTC	1 cut(s)	1569
EaeI	YGGCCR	4 cut(s)	350, 500, 684, 1014
Eam1104I	CTCTTC	4 cut(s)	331, 343, 571, 577
EarI	CTCTTC	4 cut(s)	331, 343, 571, 577
Eco130I	CCWWGG	1 cut(s)	1552
Eco24I	GRGCYC	1 cut(s)	1424
Eco31I	GGTCTC	1 cut(s)	849
Eco47I	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1643, 1900
Eco57I	CTGAAG	1 cut(s)	1165
Eco72I	CACGTG	1 cut(s)	1322
Eco88I	CYCGRG	2 cut(s)	137, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoO109I	RGGNCCY	3 cut(s)	429, 712, 1900
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1359, 1423, 1863
EcoT14I	CCWWGG	1 cut(s)	1552
EcoT22I	ATGCAT	1 cut(s)	1450
EcoT38I	GRGCYC	1 cut(s)	1424
ErhI	CCWWGG	1 cut(s)	1552
FaqI	GGGAC	3 cut(s)	120, 198, 1771
FauNDI	CATATG	1 cut(s)	1450
Fnu4HI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1186, 1535, 1577, 1781
FokI	GGATG	3 cut(s)	482, 1505, 1880
FriOI	GRGCYC	1 cut(s)	1424
Fsp4HI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1186, 1535, 1577, 1781
FspBI	CTAG	4 cut(s)	291, 756, 1440, 1853
GluI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1186, 1535, 1577, 1781
GsaI	CCCAGC	1 cut(s)	1142
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	9 cut(s)	352, 425, 502, 580, 686, 1016, 1060, 1198, 1728
HapII	CCGG	7 cut(s)	421, 426, 581, 617, 1213, 1583, 1938
HgaI	GACGC	1 cut(s)	830
HincII	GTYRAC	2 cut(s)	646, 1965
HindII	GTYRAC	2 cut(s)	646, 1965
HinfI	GANTC	7 cut(s)	118, 160, 560, 812, 1316, 1436, 1570
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	7 cut(s)	421, 426, 581, 617, 1213, 1583, 1938
HphI	GGTGA	3 cut(s)	225, 503, 1607
Hpy166II	GTNNAC	3 cut(s)	646, 1487, 1965
Hpy188I	TCNGA	6 cut(s)	165, 709, 1005, 1174, 1674, 1957
Hpy188III	TCNNGA	9 cut(s)	95, 137, 410, 626, 1116, 1205, 1213, 1433, 1440
Hpy8I	GTNNAC	3 cut(s)	646, 1487, 1965
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	9 cut(s)	103, 231, 240, 442, 960, 1342, 1700, 1718, 1786
HpyCH4III	ACNGT	4 cut(s)	1273, 1484, 1733, 1823
HpyCH4IV	ACGT	1 cut(s)	1321
HpyF10VI	GCNNNNNNNGC	6 cut(s)	692, 830, 1057, 1109, 1333, 1903
HpySE526I	ACGT	1 cut(s)	1321
Kpn2I	TCCGGA	1 cut(s)	1212
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
LmnI	GCTCC	6 cut(s)	675, 829, 1519, 1584, 1849, 1876
Lsp1109I	GCAGC	6 cut(s)	904, 907, 1197, 1546, 1588, 1792
LweI	GCATC	5 cut(s)	218, 535, 682, 1435, 1858
MaeI	CTAG	4 cut(s)	291, 756, 1440, 1853
MaeII	ACGT	1 cut(s)	1321
MaeIII	GTNAC	4 cut(s)	509, 1249, 1733, 1759
MalI	GATC	7 cut(s)	41, 99, 1124, 1217, 1455, 1676, 1944
MboI	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
MfeI	CAATTG	3 cut(s)	781, 1542, 1770
MflI	RGATCY	3 cut(s)	97, 1122, 1215
MhlI	GDGCHC	5 cut(s)	1151, 1329, 1424, 1639, 1977
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	9 cut(s)	343, 608, 781, 973, 1403, 1542, 1770, 1801, 2029
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	569, 1579
MmeI	TCCRAC	2 cut(s)	1494, 1884
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	1450
MroI	TCCGGA	1 cut(s)	1212
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	7 cut(s)	381, 594, 645, 1604, 1652, 1751, 1983
MslI	CAYNNNNRTG	4 cut(s)	1022, 1665, 1821, 1887
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	3 cut(s)	1142, 1745, 1970
MspI	CCGG	7 cut(s)	421, 426, 581, 617, 1213, 1583, 1938
MunI	CAATTG	3 cut(s)	781, 1542, 1770
MvaI	CCWGG	8 cut(s)	349, 504, 601, 818, 828, 1361, 1425, 1865
MwoI	GCNNNNNNNGC	6 cut(s)	692, 830, 1057, 1109, 1333, 1903
NciI	CCSGG	5 cut(s)	422, 427, 582, 618, 1583
NdeI	CATATG	1 cut(s)	1450
NdeII	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
NlaIV	GGNNCC	8 cut(s)	7, 136, 430, 615, 624, 706, 714, 1217
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	3 cut(s)	509, 1733, 1759
NsiI	ATGCAT	1 cut(s)	1450
NspV	TTCGAA	3 cut(s)	35, 341, 867
OliI	CACNNNNGTG	1 cut(s)	1821
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	953
PfeI	GAWTC	5 cut(s)	118, 160, 812, 1316, 1436
PfoI	TCCNGGA	2 cut(s)	1359, 1581
PkrI	GCNGC	8 cut(s)	354, 919, 922, 1015, 1187, 1536, 1578, 1782
PleI	GAGTC	2 cut(s)	568, 1578
PmaCI	CACGTG	1 cut(s)	1322
PmlI	CACGTG	1 cut(s)	1322
PpsI	GAGTC	2 cut(s)	568, 1578
Ppu21I	YACGTR	1 cut(s)	1322
PpuMI	RGGWCCY	3 cut(s)	429, 712, 1900
PshBI	ATTAAT	1 cut(s)	594
Psp5II	RGGWCCY	3 cut(s)	429, 712, 1900
Psp6I	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1359, 1423, 1863
PspCI	CACGTG	1 cut(s)	1322
PspFI	CCCAGC	1 cut(s)	1138
PspGI	CCWGG	8 cut(s)	347, 502, 599, 816, 826, 1359, 1423, 1863
PspN4I	GGNNCC	8 cut(s)	7, 136, 430, 615, 624, 706, 714, 1217
PspPI	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1196, 1643, 1900
PspPPI	RGGWCCY	3 cut(s)	429, 712, 1900
PstI	CTGCAG	2 cut(s)	1536, 1578
PstNI	CAGNNNCTG	2 cut(s)	1271, 1903
PsuI	RGATCY	3 cut(s)	97, 1122, 1215
PvuII	CAGCTG	2 cut(s)	1142, 1745
RsaI	GTAC	7 cut(s)	27, 447, 542, 959, 968, 1486, 1927
RsaNI	GTAC	7 cut(s)	26, 446, 541, 958, 967, 1485, 1926
RseI	CAYNNNNRTG	4 cut(s)	1022, 1665, 1821, 1887
SaqAI	TTAA	7 cut(s)	381, 594, 645, 1604, 1652, 1751, 1983
SatI	GCNGC	8 cut(s)	353, 918, 921, 1014, 1186, 1535, 1577, 1781
Sau3AI	GATC	7 cut(s)	39, 97, 1122, 1215, 1453, 1674, 1942
Sau96I	GGNCC	9 cut(s)	134, 423, 429, 614, 705, 712, 1196, 1643, 1900
SchI	GAGTC	2 cut(s)	569, 1579
SduI	GDGCHC	5 cut(s)	1151, 1329, 1424, 1639, 1977
SfaNI	GCATC	5 cut(s)	218, 535, 682, 1435, 1858
SfcI	CTRYAG	3 cut(s)	1480, 1532, 1574
SfuI	TTCGAA	3 cut(s)	35, 341, 867
SinI	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1643, 1900
SmiMI	CAYNNNNRTG	4 cut(s)	1022, 1665, 1821, 1887
Sse9I	AATT	9 cut(s)	343, 608, 781, 973, 1403, 1542, 1770, 1801, 2029
SsiI	CCGC	9 cut(s)	207, 353, 486, 801, 889, 1013, 1051, 1618, 1968
SspMI	CTAG	4 cut(s)	291, 756, 1440, 1853
StyI	CCWWGG	1 cut(s)	1552
TaaI	ACNGT	4 cut(s)	1273, 1484, 1733, 1823
TaiI	ACGT	1 cut(s)	1324
TaqI	TCGA	6 cut(s)	35, 341, 519, 575, 606, 867
TasI	AATT	9 cut(s)	343, 608, 781, 973, 1403, 1542, 1770, 1801, 2029
TatI	WGTACW	4 cut(s)	25, 445, 966, 1484
TauI	GCSGC	2 cut(s)	355, 1016
TfiI	GAWTC	5 cut(s)	118, 160, 812, 1316, 1436
Tru1I	TTAA	7 cut(s)	381, 594, 645, 1604, 1652, 1751, 1983
Tru9I	TTAA	7 cut(s)	381, 594, 645, 1604, 1652, 1751, 1983
TscAI	CASTG	2 cut(s)	1738, 1828
TseFI	GTSAC	3 cut(s)	509, 1733, 1759
TseI	GCWGC	6 cut(s)	917, 920, 1185, 1534, 1576, 1780
Tsp45I	GTSAC	3 cut(s)	509, 1733, 1759
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	2 cut(s)	1738, 1828
VpaK11BI	GGWCC	7 cut(s)	134, 429, 614, 705, 712, 1643, 1900
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	3 cut(s)	343, 973, 1403
XbaI	TCTAGA	1 cut(s)	1439
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 607
XspI	CTAG	4 cut(s)	291, 756, 1440, 1853
Zsp2I	ATGCAT	1 cut(s)	1450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.