Rorug05G0267900

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001189
Physical Location & Seq
Reverse (-)
30247208 .. 30254646
7439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0267900.1

Sequence Viewer

Length: 1296 bp
ATGGGGCGTAATCTGAGAAATGATTCTGAATCTCCAGTGAGGGACCGTGGGTCTCCTCATAGGAGGAAGAGTCAATCTCGAACAGAGAGATCACCTACTCGACATAGAAAATCCAACAGAGGAAGTTCTCCACCAAGAGAGAAACATTCAAGTCGCCCCAAGTCTCCCAAGCATGCAAGGTCACCCTCTCCTCCTCCTCGCTCTCCTTCTCCCCGGACAAAACGGCTAAGAAGAGCTGAAGCTGGACGAGTGCCTGGGAGAGAACATGAAAGGATCAATGATAGGGGGATCAGTAGGGATTTACAGGAACGTGGTTCAGAGAGAGATGTTGGGAGTGATAGAAAGGAGAGATTGTCGGGAAGGAATGATACCGATGACAAATCTTCAAGACCAAGGCATGGTACTTCTCCATCAGATCGACACCGCAGGAGTAGGCATAGATCTCACTCACCTCAACATGCTGGTGATACAAGAGATGGGGAGAAAGTAATTGAGGGCCGTGGAAGAAATCGTAGCAGAGGGAGTGAGAAAAGCATGCACAGGGAAAAAGGTTCAGATGGGGAAAATGAGACTGAAAGAAGGGAGAGAAGGACAGCAAAAGACAGCACTGGTCATAAGTCTTCAAGATCAAGACATGGGCAGTCGACTTCTCCATTGAATGGACACCACAAGAACAGACACCGAACTCATTCACCTCAACAAGCTGCAGATACCAGAGCCCGTGATGAGGTGCCAGAGTCAAGGGAAGCTGAGGATGGGATTGATGAGAATGATTCAGTAGCTATGATGAGGGCTGCTGAGGAAGCTTTGGAAGCACAGAAAAAGCAAAAACCTTCATTTGAGCTATCTGGAAAGCTTGCTGCGGAAACCAATAGATTCAGGGGTATAACACTATTATACACTGAGCCAGCAGAAGGACGGCCACCTCATGTAAAATGGCGCCTTTATGTTTTCAAGGGTGGTGAAGTTCTTGATGATCCCATTAAGATACATCGGCAAAGCTGTTACCTTTTCGGGAGGGAAAGAAGGGTGGCAGACATCCCTACAGATCACCCGTCCTGCAGCAAACAACATGCTGTTATACAGTTTCGGCAAGTAGAGAAGGAGGAACCTGATGGTACATTGTCAAAGGAAGTAAAGCCTTACATAATGGACCTTGGAAGCACAAATAAGACCTTTGTTAATGAAAGTGCAATTGAACCTCAGCGATATTATGAACTGATGGAAAGAGACACGATCAAATTTGGTAATAGTAGCCGAGAGTATGTGCTACTGCACGAGAATTCTATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

431

Amino Acids

49.46

Weight (kDa)

10.21

Isoelectric Point (pI)

70.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 336 - 416 1e-15 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 730, 939
AccB7I CCANNNNNTGG 2 cut(s) 398, 659
AccI GTMKAC 1 cut(s) 644
AciI CCGC 2 cut(s) 424, 863
AclWI GGATC 3 cut(s) 281, 296, 971
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 2 cut(s) 1241, 1282
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 940
AfaI GTAC 2 cut(s) 403, 1120
AfiI CCNNNNNNNGG 4 cut(s) 398, 659, 727, 914
AgsI TTSAA 6 cut(s) 150, 387, 624, 658, 955, 1199
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 9 cut(s) 236, 242, 704, 749, 782, 806, 844, 856, 1002
AluI AGCT 9 cut(s) 236, 242, 704, 749, 782, 806, 844, 856, 1002
Alw26I GTCTC 4 cut(s) 57, 168, 563, 1224
AlwI GGATC 3 cut(s) 281, 296, 971
AoxI GGCC 2 cut(s) 496, 920
ApeKI GCWGC 4 cut(s) 704, 794, 860, 1062
ApoI RAATTY 2 cut(s) 1241, 1282
Asp700I GAANNNNTTC 2 cut(s) 22, 688
AspLEI GCGC 1 cut(s) 942
AspS9I GGNCC 3 cut(s) 43, 496, 1153
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 7 cut(s) 84, 174, 441, 476, 684, 974, 1043
AvaII GGWCC 2 cut(s) 43, 1153
BanI GGYRCC 2 cut(s) 730, 939
BanII GRGCYC 1 cut(s) 721
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BauI CACGAG 1 cut(s) 1277
BbsI GAAGAC 1 cut(s) 612
BbvCI CCTCAGC 3 cut(s) 750, 798, 1203
BbvI GCAGC 4 cut(s) 691, 781, 847, 1074
BccI CCATC 6 cut(s) 418, 470, 551, 749, 1109, 1216
BceAI ACGGC 3 cut(s) 239, 483, 935
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 4 cut(s) 57, 168, 563, 1224
BfmI CTRYAG 3 cut(s) 705, 1044, 1060
BfoI RGCGCY 1 cut(s) 943
BglII AGATCT 1 cut(s) 440
BisI GCNGC 4 cut(s) 705, 795, 861, 1063
BlsI GCNGC 4 cut(s) 706, 796, 862, 1064
Bme1390I CCNGG 2 cut(s) 214, 255
Bme18I GGWCC 2 cut(s) 43, 1153
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 43, 496, 1153
BmiI GGNNCC 4 cut(s) 44, 732, 941, 1110
BmrFI CCNGG 2 cut(s) 214, 255
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 3 cut(s) 750, 798, 1203
BpuMI CCSGG 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 940
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 6 cut(s) 46, 212, 254, 392, 499, 1156
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 338, 368
Bsc4I CCNNNNNNNGG 4 cut(s) 398, 659, 727, 914
Bse1I ACTGG 2 cut(s) 35, 613
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 6 cut(s) 46, 212, 254, 392, 499, 1156
BseGI GGATG 2 cut(s) 760, 1038
BseLI CCNNNNNNNGG 4 cut(s) 398, 659, 727, 914
BseMII CTCAG 5 cut(s) 5, 741, 789, 894, 1217
BseNI ACTGG 2 cut(s) 35, 613
BseRI GAGGAG 4 cut(s) 45, 180, 183, 186
BseXI GCAGC 4 cut(s) 691, 781, 847, 1074
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 2 cut(s) 498, 922
BshNI GGYRCC 2 cut(s) 730, 939
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 4 cut(s) 398, 659, 727, 914
BsmAI GTCTC 4 cut(s) 57, 168, 563, 1224
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 498, 922
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 721
Bsp143I GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
BspACI CCGC 2 cut(s) 424, 863
BspANI GGCC 2 cut(s) 498, 922
BspCNI CTCAG 5 cut(s) 6, 742, 790, 895, 1216
BspLI GGNNCC 4 cut(s) 44, 732, 941, 1110
BspMAI CTGCAG 2 cut(s) 709, 1064
BspPI GGATC 3 cut(s) 281, 296, 971
BspQI GCTCTTC 1 cut(s) 226
BspT107I GGYRCC 2 cut(s) 730, 939
BspTNI GGTCTC 1 cut(s) 57
BsrI ACTGG 2 cut(s) 35, 613
BssECI CCNNGG 6 cut(s) 46, 212, 254, 392, 499, 1156
BssMI GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
BssNI GRCGYC 1 cut(s) 940
BssSI CACGAG 1 cut(s) 1277
BssT1I CCWWGG 2 cut(s) 392, 1156
Bst2BI CACGAG 1 cut(s) 1277
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 47, 1086
Bst6I CTCTTC 2 cut(s) 62, 226
BstACI GRCGYC 1 cut(s) 940
BstC8I GCNNGC 4 cut(s) 174, 536, 858, 909
BstDEI CTNAG 6 cut(s) 14, 227, 750, 798, 903, 1203
BstDSI CCRYGG 2 cut(s) 46, 499
BstEII GGTNACC 1 cut(s) 180
BstF5I GGATG 2 cut(s) 760, 1038
BstH2I RGCGCY 1 cut(s) 943
BstHHI GCGC 1 cut(s) 942
BstKTI GATC 9 cut(s) 92, 276, 291, 418, 443, 629, 979, 1051, 1239
BstMAI GTCTC 4 cut(s) 57, 168, 563, 1224
BstMBI GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
BstMWI GCNNNNNNNGC 2 cut(s) 803, 812
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 4 cut(s) 176, 461, 538, 1076
BstPI GGTNACC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 212, 253
BstSFI CTRYAG 3 cut(s) 705, 1044, 1060
BstV1I GCAGC 4 cut(s) 691, 781, 847, 1074
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 2 cut(s) 498, 922
BtgI CCRYGG 2 cut(s) 46, 499
BtsCI GGATG 2 cut(s) 760, 1038
BtsIMutI CAGTG 3 cut(s) 42, 606, 900
Cac8I GCNNGC 4 cut(s) 174, 536, 858, 909
CfoI GCGC 1 cut(s) 942
Cfr13I GGNCC 3 cut(s) 43, 496, 1153
Csp6I GTAC 2 cut(s) 402, 1119
CviAII CATG 8 cut(s) 173, 266, 398, 458, 535, 635, 929, 1073
CviQI GTAC 2 cut(s) 402, 1119
DdeI CTNAG 6 cut(s) 14, 227, 750, 798, 903, 1203
DinI GGCGCC 1 cut(s) 941
DpnI GATC 9 cut(s) 91, 275, 290, 417, 442, 628, 978, 1050, 1238
DpnII GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 62, 226
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 62, 226
Eco130I CCWWGG 2 cut(s) 392, 1156
Eco24I GRGCYC 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 43, 1153
Eco57I CTGAAG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 180
EcoO65I GGTNACC 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 1282
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 392, 1156
EcoT38I GRGCYC 1 cut(s) 721
EgeI GGCGCC 1 cut(s) 941
EheI GGCGCC 1 cut(s) 941
ErhI CCWWGG 2 cut(s) 392, 1156
FaeI CATG 8 cut(s) 176, 269, 401, 461, 538, 638, 932, 1076
FaqI GGGAC 1 cut(s) 56
FatI CATG 8 cut(s) 172, 265, 397, 457, 534, 634, 928, 1072
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 4 cut(s) 705, 795, 861, 1063
FokI GGATG 2 cut(s) 767, 1025
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 4 cut(s) 705, 795, 861, 1063
GlaI GCGC 1 cut(s) 941
GluI GCNGC 4 cut(s) 705, 795, 861, 1063
GsuI CTGGAG 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 943
HaeIII GGCC 2 cut(s) 498, 922
HapII CCGG 1 cut(s) 214
HhaI GCGC 1 cut(s) 942
Hin1I GRCGYC 1 cut(s) 940
Hin1II CATG 8 cut(s) 176, 269, 401, 461, 538, 638, 932, 1076
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 2 cut(s) 804, 854
HinfI GANTC 6 cut(s) 23, 29, 70, 737, 773, 876
HpaII CCGG 1 cut(s) 214
HphI GGTGA 7 cut(s) 84, 174, 441, 476, 684, 974, 1043
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 5 cut(s) 15, 28, 319, 415, 556
Hpy188III TCNNGA 8 cut(s) 78, 357, 387, 624, 630, 849, 971, 1015
Hpy8I GTNNAC 1 cut(s) 645
HpyAV CCTTC 8 cut(s) 216, 354, 573, 582, 843, 908, 1020, 1096
HpyCH4III ACNGT 2 cut(s) 47, 1086
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 6 cut(s) 176, 538, 707, 1062, 1193, 1276
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 812
HpyF3I CTNAG 6 cut(s) 14, 227, 750, 798, 903, 1203
HpySE526I ACGT 1 cut(s) 310
Hsp92I GRCGYC 1 cut(s) 940
Hsp92II CATG 8 cut(s) 176, 269, 401, 461, 538, 638, 932, 1076
HspAI GCGC 1 cut(s) 940
KasI GGCGCC 1 cut(s) 939
Kzo9I GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
LguI GCTCTTC 1 cut(s) 226
Lsp1109I GCAGC 4 cut(s) 691, 781, 847, 1074
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 180, 1004
MalI GATC 9 cut(s) 91, 275, 290, 417, 442, 628, 978, 1050, 1238
MboI GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
MboII GAAGA 5 cut(s) 79, 243, 375, 516, 612
MfeI CAATTG 1 cut(s) 1194
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 4 cut(s) 489, 1194, 1241, 1282
Mly113I GGCGCC 1 cut(s) 940
MlyI GAGTC 2 cut(s) 79, 746
MmeI TCCRAC 1 cut(s) 138
MroXI GAANNNNTTC 2 cut(s) 22, 688
MseI TTAA 2 cut(s) 984, 1182
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 214, 255
MunI CAATTG 1 cut(s) 1194
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 803, 812
NarI GGCGCC 1 cut(s) 940
NciI CCSGG 1 cut(s) 214
NdeII GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
NlaIII CATG 8 cut(s) 176, 269, 401, 461, 538, 638, 932, 1076
NlaIV GGNNCC 4 cut(s) 44, 732, 941, 1110
NmeAIII GCCGAG 1 cut(s) 1283
NmuCI GTSAC 1 cut(s) 180
NspI RCATGY 4 cut(s) 176, 461, 538, 1076
PaeI GCATGC 2 cut(s) 176, 538
PciSI GCTCTTC 1 cut(s) 226
PdmI GAANNNNTTC 2 cut(s) 22, 688
PfeI GAWTC 4 cut(s) 23, 29, 773, 876
PflMI CCANNNNNTGG 2 cut(s) 398, 659
PkrI GCNGC 4 cut(s) 706, 796, 862, 1064
PleI GAGTC 2 cut(s) 78, 745
PluTI GGCGCC 1 cut(s) 943
PpsI GAGTC 2 cut(s) 78, 745
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 180
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 4 cut(s) 44, 732, 941, 1110
PspPI GGNCC 3 cut(s) 43, 496, 1153
PstI CTGCAG 2 cut(s) 709, 1064
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 2 cut(s) 403, 1120
RsaNI GTAC 2 cut(s) 402, 1119
RseI CAYNNNNRTG 1 cut(s) 462
SalI GTCGAC 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 984, 1182
SatI GCNGC 4 cut(s) 705, 795, 861, 1063
Sau3AI GATC 9 cut(s) 89, 273, 288, 415, 440, 626, 976, 1048, 1236
Sau96I GGNCC 3 cut(s) 43, 496, 1153
SchI GAGTC 2 cut(s) 79, 746
ScrFI CCNGG 2 cut(s) 214, 255
SduI GDGCHC 1 cut(s) 721
SfcI CTRYAG 3 cut(s) 705, 1044, 1060
SfoI GGCGCC 1 cut(s) 941
SinI GGWCC 2 cut(s) 43, 1153
SmiMI CAYNNNNRTG 1 cut(s) 462
SphI GCATGC 2 cut(s) 176, 538
Sse9I AATT 4 cut(s) 489, 1194, 1241, 1282
SsiI CCGC 2 cut(s) 424, 863
SspDI GGCGCC 1 cut(s) 939
StyD4I CCNGG 2 cut(s) 212, 253
StyI CCWWGG 2 cut(s) 392, 1156
TaaI ACNGT 2 cut(s) 47, 1086
TaiI ACGT 1 cut(s) 313
TaqI TCGA 4 cut(s) 79, 100, 418, 644
TasI AATT 4 cut(s) 489, 1194, 1241, 1282
TfiI GAWTC 4 cut(s) 23, 29, 773, 876
Tru1I TTAA 2 cut(s) 984, 1182
Tru9I TTAA 2 cut(s) 984, 1182
TscAI CASTG 3 cut(s) 42, 613, 907
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 4 cut(s) 704, 794, 860, 1062
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 4 cut(s) 282, 825, 1200, 1230
TspRI CASTG 3 cut(s) 42, 613, 907
Van91I CCANNNNNTGG 2 cut(s) 398, 659
VpaK11BI GGWCC 2 cut(s) 43, 1153
XapI RAATTY 2 cut(s) 1241, 1282
XceI RCATGY 4 cut(s) 176, 461, 538, 1076
XmiI GTMKAC 1 cut(s) 644
XmnI GAANNNNTTC 2 cut(s) 22, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.