RchiOBHm_Chr1g0318971

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001189
Physical Location & Seq
Forward (+)
6618744 .. 6623240
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54922

Sequence Viewer

Length: 2181 bp
ATGGATTCCTATGAAGCTACAAGGATTGTGTTCTCAAGGATCACAAACTTGGACCCAGAAAATGCTTCCAAAATCATGGGTCTTCTTCTAATCCAAGACCATGGAGAGAAGGAGATGATACGATTAGCTTTCGGCCCCGAGGCGTTTCTCCACTCTGTGATTCTCAAGGCTCGGAAGGACTTGGGACTAATGCCCATATCCAACTCTCCATCCACACCCACCACGCCTTCCTCTCCTTCGCCTTTCCTCTCCACCAACCCAATCGCTATTTCGAGGCAAAACTCTGCTTCCTCAAGGCTATCTCTCACTATACCAAACCCATCTTCTTCTGCTTCTACTTGGGCTGCTCTGTCTTCCGAGCTTCGAAACCAAGACGAGAGTATGATGATGAGTCCCAACAACATGGCTCCTAACGTGTCTTCTTCATCTTCCATGATGAATTCATCTCTACCCTTTTTCGGAAACGGTGGACCCGACCATGTGCTCGAGGAGTTTCAGCTTCAGGACCAGCTCTCTTTTCTCAACGATGGAGCTCCTAAATCCCCTGATTTGTTTTACCCCCAGTCAGACTTGTCTTCCAGCCCAACTAATGGTTCTGATCAGACCCTTTACTCCTCCTACGGTGGCTCCGGGAACTGGGGCGGTGGTGGGGCTCTTCACCGCCGGAGCTGCTCCGTCAGTGATGTGTGCTTGGAAGACCCGAATTCTGGGTTCGGGTGGAAGCCCTGTTTGTACTATGCTAGAGGGTACTGCAAGAATGGAACTAGCTGTAGATTCTTGCATGGTGGTGGAATCGGGGACTTGGGTTCGGATGGTGTTCCACTTGTTGGTTCACCAAGCAAGCTTGAGATGATGGACCAGTCGTGCCATGAAGCACTTCTCAGATCCAAGTCTGCTCAACAGCAAAGACTGGCTGCAGCTTCCCAGCTCATGGCCTCAGCCAACTCTTTTCCTTACTCCTCTAAGTGCGTGAACTTCCTTATTCAGCAGCAACAAACTGATGCGCAGAGGGCTGCCGCAGCCTTGATGATGGGTGATGATATCCACAAATTTAGTCGATCTCCTCGGATGGAAAGGAACGAGTTTCCAATGATGAACGGTGGGGCTGGGATGGTGAACCCAGCCTCAAGGCAGATATACTTGACTTTTCCAGCTGATAGCACTTTCAGAGAAGAAGACGTGTCCAATTACTTCAGCATTTATGGACCTGTTCAAGATGTGAGAATTCCATACCAGCAGAAGAGGATGTTTGGGTTTGTTACATTTGTGTACCCGGAGACTGTGAAGCATATTTTGGCGAAAGGGAACCCTCATTTTGTGTGTGATGCTCGAGTGCTGGTCAAGCCTTACAAGGAGAAGGGCAAAGTTCAGGACAAGTACAGGAAGCAACAAGTGGAAAGAGGAGATTTGTCACCCTGTGGCACACCTACTGGCCTTGATGGTAGAGACCCTTATGATCTCCAGCTAGGAGCTAGGATGTTTTACAACTCCCAAGACATTTTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGAGCTTCAGCAAGCACTTGAACTTCAAAGCCGAAGGCTAATGGGTCTGCAGCTTCTTGATGTCAAGAAGCATCACCACCGAGCTCTTTCTGCCAGCAGTCCGGTTAATTCTCCTACTCAGTCCCCCAGTATGTTCAATCAGAACTTTGTGCATCCTTCATTTCATAACCCAGAAGTTACTAAAGAGAACTGCGCTAGTCCAGTGCCACCCATTTCTTCAGCTCTCTCAGCAGACCAGCAGCCTCAGGTGGCAGCAACCGTTGCTACAGGTAAAGAATCAGGTGCCAACAGTGACGACAGTGGGAGTGGCAAGGAAAGCCCCCATGATGAGGATGTCAGTGGTTTGCTAGGAAGCTTGGAGCACAACCTCCCCGACAGCCCTTTTGCTTCTCCAACAAAAGGAGCCCGGGATTACTTGTCTGCATTCCCGGTCGCGGCTAGTGAGGCCAATGATTCATCTGATGCCTCAGCTGCAACAGCTAACATTAACTTGGCTACTTCCCTACTGCCAGTGCCAGCCACTTCCTCACTGGACATGGCATCTTTCAAGTCCTTTAACTGCCAAATTCCAAGGTTGTCTTCCGGCCATGGAGCCATAGGGATGTATGCCGCCGGCGCAGGGGGGCCGAAATGCCCGGTTGGAACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

726

Amino Acids

78.34

Weight (kDa)

6.12

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 64 4.3e-33 AtC3H46 PABC domain
RRM_1 PF00076 389 - 434 6.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 1811
AccB7I CCANNNNNTGG 3 cut(s) 590, 827, 931
AccII CGCG 1 cut(s) 1964
AciI CCGC 5 cut(s) 642, 661, 1017, 1964, 2139
AclWI GGATC 2 cut(s) 47, 879
AcoI YGGCCR 1 cut(s) 2113
AcsI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2094
AcuI CTGAAG 4 cut(s) 485, 1177, 1520, 1731
AdeI CACNNNGTG 2 cut(s) 157, 1418
AfaI GTAC 4 cut(s) 734, 749, 1271, 1379
AflIII ACRYGT 2 cut(s) 414, 1179
AgsI TTSAA 5 cut(s) 1214, 1550, 1556, 1666, 2077
AjiI CACGTC 1 cut(s) 1180
Alw21I GWGCWC 4 cut(s) 486, 535, 1615, 1893
Alw26I GTCTC 2 cut(s) 1271, 1440
AlwI GGATC 2 cut(s) 47, 879
Ama87I CYCGRG 4 cut(s) 137, 485, 1329, 1935
AoxI GGCC 6 cut(s) 133, 933, 1432, 1974, 2113, 2153
ApoI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2094
ArsI GACNNNNNNTTYG 2 cut(s) 1895, 1927
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 3 cut(s) 1006, 1724, 2147
AspS9I GGNCC 7 cut(s) 52, 134, 470, 505, 856, 1205, 2153
AsuC2I CCSGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
AsuHPI GGTGA 6 cut(s) 650, 825, 1046, 1126, 1404, 1595
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 4 cut(s) 137, 485, 1329, 1935
AvaII GGWCC 5 cut(s) 52, 470, 505, 856, 1205
AxyI CCTNAGG 1 cut(s) 1773
BanI GGYRCC 1 cut(s) 1811
BanII GRGCYC 4 cut(s) 535, 655, 1615, 1936
BbsI GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2100
Bbv12I GWGCWC 4 cut(s) 486, 535, 1615, 1893
BbvCI CCTCAGC 2 cut(s) 937, 1996
BccI CCATC 9 cut(s) 217, 328, 521, 806, 847, 1024, 1063, 1105, 1433
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
BcoDI GTCTC 2 cut(s) 1271, 1440
BfaI CTAG 7 cut(s) 741, 765, 1466, 1473, 1725, 1877, 1968
BfmI CTRYAG 4 cut(s) 769, 915, 1577, 1794
BlpI GCTNAGC 1 cut(s) 1530
Bme1390I CCNGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
Bme18I GGWCC 5 cut(s) 52, 470, 505, 856, 1205
BmeT110I CYCGRG 4 cut(s) 137, 485, 1329, 1935
BmgBI CACGTC 1 cut(s) 1180
BmgT120I GGNCC 7 cut(s) 52, 134, 470, 505, 856, 1205, 2153
BmrFI CCNGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
BmrI ACTGGG 3 cut(s) 556, 646, 1650
BmsI GCATC 6 cut(s) 991, 1315, 1609, 1690, 1981, 2078
BmuI ACTGGG 3 cut(s) 556, 646, 1650
BpiI GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2100
BpmI CTGGAG 2 cut(s) 1445, 1538
Bpu10I CCTNAGC 2 cut(s) 937, 1996
Bpu1102I GCTNAGC 1 cut(s) 1530
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 5 cut(s) 19, 149, 277, 866, 1111
BpuMI CCSGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
BsaI GGTCTC 1 cut(s) 1440
BsaJI CCNNGG 6 cut(s) 100, 138, 1064, 1935, 2099, 2116
BsaWI WCCGGW 1 cut(s) 1630
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bse118I RCCGGY 1 cut(s) 2141
Bse1I ACTGG 9 cut(s) 562, 641, 859, 915, 1435, 1656, 1730, 2039, 2064
Bse21I CCTNAGG 1 cut(s) 1773
BseDI CCNNGG 6 cut(s) 100, 138, 1064, 1935, 2099, 2116
BseGI GGATG 9 cut(s) 209, 817, 1074, 1116, 1251, 1482, 1681, 1867, 2136
BseMII CTCAG 7 cut(s) 895, 951, 1521, 1661, 1770, 1787, 2010
BseNI ACTGG 9 cut(s) 562, 641, 859, 915, 1435, 1656, 1730, 2039, 2064
BseRI GAGGAG 7 cut(s) 503, 604, 949, 1053, 1416, 1522, 1535
BseYI CCCAGC 3 cut(s) 924, 1106, 1120
Bsh1236I CGCG 1 cut(s) 1964
Bsh1285I CGRYCG 1 cut(s) 1962
BshFI GGCC 6 cut(s) 135, 935, 1434, 1976, 2115, 2155
BshNI GGYRCC 1 cut(s) 1811
BsiEI CGRYCG 1 cut(s) 1962
BsiHKAI GWGCWC 4 cut(s) 486, 535, 1615, 1893
BsiHKCI CYCGRG 4 cut(s) 137, 485, 1329, 1935
BsiSI CCGG 9 cut(s) 630, 664, 1274, 1631, 1936, 1958, 2112, 2142, 2165
BslFI GGGAC 4 cut(s) 198, 378, 812, 1636
BsmAI GTCTC 2 cut(s) 1271, 1440
BsmFI GGGAC 4 cut(s) 198, 378, 812, 1636
BsmI GAATGC 1 cut(s) 1952
BsnI GGCC 6 cut(s) 135, 935, 1434, 1976, 2115, 2155
Bso31I GGTCTC 1 cut(s) 1440
BsoBI CYCGRG 4 cut(s) 137, 485, 1329, 1935
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 6 cut(s) 486, 535, 655, 1615, 1893, 1936
Bsp143I GATC 5 cut(s) 39, 598, 884, 1058, 1456
Bsp1720I GCTNAGC 1 cut(s) 1530
Bsp19I CCATGG 2 cut(s) 100, 2116
BspACI CCGC 5 cut(s) 642, 661, 1017, 1964, 2139
BspANI GGCC 6 cut(s) 135, 935, 1434, 1976, 2115, 2155
BspCNI CTCAG 7 cut(s) 894, 950, 1522, 1660, 1769, 1786, 2009
BspFNI CGCG 1 cut(s) 1964
BspMAI CTGCAG 2 cut(s) 919, 1581
BspPI GGATC 2 cut(s) 47, 879
BspQI GCTCTTC 1 cut(s) 660
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 1811
BspTNI GGTCTC 1 cut(s) 1440
BsrFI RCCGGY 1 cut(s) 2141
BsrI ACTGG 9 cut(s) 562, 641, 859, 915, 1435, 1656, 1730, 2039, 2064
BssAI RCCGGY 1 cut(s) 2141
BssECI CCNNGG 6 cut(s) 100, 138, 1064, 1935, 2099, 2116
BssMI GATC 5 cut(s) 39, 598, 884, 1058, 1456
BssT1I CCWWGG 3 cut(s) 100, 2099, 2116
Bst4CI ACNGT 7 cut(s) 467, 623, 1100, 1282, 1789, 1820, 1829
Bst6I CTCTTC 2 cut(s) 660, 1235
BstAPI GCANNNNNTGC 1 cut(s) 1790
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 6 cut(s) 842, 1527, 1542, 1624, 2046, 2143
BstDEI CTNAG 8 cut(s) 881, 937, 963, 1530, 1647, 1756, 1773, 1996
BstDSI CCRYGG 2 cut(s) 100, 2116
BstF5I GGATG 9 cut(s) 209, 817, 1074, 1116, 1251, 1482, 1681, 1867, 2136
BstFNI CGCG 1 cut(s) 1964
BstHHI GCGC 3 cut(s) 1006, 1724, 2147
BstKTI GATC 5 cut(s) 42, 601, 887, 1061, 1459
BstMAI GTCTC 2 cut(s) 1271, 1440
BstMBI GATC 5 cut(s) 39, 598, 884, 1058, 1456
BstMCI CGRYCG 1 cut(s) 1962
BstSCI CCNGG 6 cut(s) 629, 1272, 1934, 1935, 1956, 2163
BstSFI CTRYAG 4 cut(s) 769, 915, 1577, 1794
BstUI CGCG 1 cut(s) 1964
BstV2I GAAGAC 7 cut(s) 74, 345, 411, 567, 702, 1182, 2100
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 3 cut(s) 76, 101, 403
BstYI RGATCY 1 cut(s) 884
Bsu36I CCTNAGG 1 cut(s) 1773
BsuRI GGCC 6 cut(s) 135, 935, 1434, 1976, 2115, 2155
BtgI CCRYGG 2 cut(s) 100, 2116
BtrI CACGTC 1 cut(s) 1180
BtsCI GGATG 9 cut(s) 209, 817, 1074, 1116, 1251, 1482, 1681, 1867, 2136
BtsIMutI CAGTG 7 cut(s) 685, 1737, 1825, 1834, 1873, 2046, 2057
Cac8I GCNNGC 6 cut(s) 842, 1527, 1542, 1624, 2046, 2143
CfoI GCGC 3 cut(s) 1006, 1724, 2147
Cfr10I RCCGGY 1 cut(s) 2141
Cfr13I GGNCC 7 cut(s) 52, 134, 470, 505, 856, 1205, 2153
Cfr9I CCCGGG 1 cut(s) 1935
Csp6I GTAC 4 cut(s) 733, 748, 1270, 1378
CviQI GTAC 4 cut(s) 733, 748, 1270, 1378
DdeI CTNAG 8 cut(s) 881, 937, 963, 1530, 1647, 1756, 1773, 1996
DpnI GATC 5 cut(s) 41, 600, 886, 1060, 1458
DpnII GATC 5 cut(s) 39, 598, 884, 1058, 1456
DraIII CACNNNGTG 2 cut(s) 157, 1418
EaeI YGGCCR 1 cut(s) 2113
Eam1104I CTCTTC 2 cut(s) 660, 1235
EarI CTCTTC 2 cut(s) 660, 1235
Ecl136II GAGCTC 2 cut(s) 533, 1613
Eco130I CCWWGG 3 cut(s) 100, 2099, 2116
Eco24I GRGCYC 4 cut(s) 535, 655, 1615, 1936
Eco31I GGTCTC 1 cut(s) 1440
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 5 cut(s) 52, 470, 505, 856, 1205
Eco53kI GAGCTC 2 cut(s) 533, 1613
Eco57I CTGAAG 4 cut(s) 485, 1177, 1520, 1731
Eco81I CCTNAGG 1 cut(s) 1773
Eco88I CYCGRG 4 cut(s) 137, 485, 1329, 1935
EcoICRI GAGCTC 2 cut(s) 533, 1613
EcoRI GAATTC 3 cut(s) 439, 703, 1224
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 3 cut(s) 100, 2099, 2116
EcoT38I GRGCYC 4 cut(s) 535, 655, 1615, 1936
ErhI CCWWGG 3 cut(s) 100, 2099, 2116
FalI AAGNNNNNCTT 4 cut(s) 1518, 1550, 2092, 2124
FaqI GGGAC 4 cut(s) 198, 378, 812, 1636
FbaI TGATCA 1 cut(s) 598
FokI GGATG 9 cut(s) 196, 824, 1081, 1123, 1258, 1489, 1668, 1874, 2143
FriOI GRGCYC 4 cut(s) 535, 655, 1615, 1936
FspBI CTAG 7 cut(s) 741, 765, 1466, 1473, 1725, 1877, 1968
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 3 cut(s) 1005, 1723, 2146
GsaI CCCAGC 3 cut(s) 928, 1110, 1124
GsuI CTGGAG 2 cut(s) 1445, 1538
HaeIII GGCC 6 cut(s) 135, 935, 1434, 1976, 2115, 2155
HapII CCGG 9 cut(s) 630, 664, 1274, 1631, 1936, 1958, 2112, 2142, 2165
HhaI GCGC 3 cut(s) 1006, 1724, 2147
Hin6I GCGC 3 cut(s) 1004, 1722, 2145
HinP1I GCGC 3 cut(s) 1004, 1722, 2145
HindIII AAGCTT 2 cut(s) 842, 1882
HinfI GANTC 7 cut(s) 5, 160, 391, 774, 792, 1805, 1982
HpaII CCGG 9 cut(s) 630, 664, 1274, 1631, 1936, 1958, 2112, 2142, 2165
HphI GGTGA 6 cut(s) 650, 825, 1046, 1126, 1404, 1595
Hpy166II GTNNAC 5 cut(s) 470, 833, 973, 1117, 1270
Hpy188III TCNNGA 5 cut(s) 503, 1214, 1370, 1586, 1594
Hpy8I GTNNAC 5 cut(s) 470, 833, 973, 1117, 1270
HpyAV CCTTC 7 cut(s) 103, 169, 237, 246, 1351, 1557, 1695
HpyCH4III ACNGT 7 cut(s) 467, 623, 1100, 1282, 1789, 1820, 1829
HpyCH4IV ACGT 2 cut(s) 414, 1179
HpyCH4V TGCA 7 cut(s) 753, 781, 917, 1579, 1681, 1952, 2003
HpyF3I CTNAG 8 cut(s) 881, 937, 963, 1530, 1647, 1756, 1773, 1996
HpySE526I ACGT 2 cut(s) 414, 1179
HspAI GCGC 3 cut(s) 1004, 1722, 2145
KroI GCCGGC 1 cut(s) 2141
KroNI GCCGGC 1 cut(s) 2143
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 39, 598, 884, 1058, 1456
LguI GCTCTTC 1 cut(s) 660
LweI GCATC 6 cut(s) 991, 1315, 1609, 1690, 1981, 2078
MaeI CTAG 7 cut(s) 741, 765, 1466, 1473, 1725, 1877, 1968
MaeII ACGT 2 cut(s) 414, 1179
MaeIII GTNAC 4 cut(s) 1258, 1410, 1705, 1820
MalI GATC 5 cut(s) 41, 600, 886, 1060, 1458
MboI GATC 5 cut(s) 39, 598, 884, 1058, 1456
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 6 cut(s) 486, 535, 655, 1615, 1893, 1936
MluCI AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1636, 2094
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 3 cut(s) 225, 1946, 2149
MreI CGCCGGCG 1 cut(s) 2141
MroNI GCCGGC 1 cut(s) 2141
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 3 cut(s) 1635, 2016, 2085
MslI CAYNNNNRTG 2 cut(s) 786, 2129
MspA1I CMGCKG 2 cut(s) 1154, 2000
MspI CCGG 9 cut(s) 630, 664, 1274, 1631, 1936, 1958, 2112, 2142, 2165
MspR9I CCNGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
Mva1269I GAATGC 1 cut(s) 1952
MvnI CGCG 1 cut(s) 1964
NaeI GCCGGC 1 cut(s) 2143
NciI CCSGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
NcoI CCATGG 2 cut(s) 100, 2116
NdeII GATC 5 cut(s) 39, 598, 884, 1058, 1456
NgoMIV GCCGGC 1 cut(s) 2141
NmuCI GTSAC 2 cut(s) 1410, 1820
NsbI TGCGCA 1 cut(s) 1005
NspV TTCGAA 1 cut(s) 364
PaeR7I CTCGAG 2 cut(s) 485, 1329
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PctI GAATGC 1 cut(s) 1952
PdiI GCCGGC 1 cut(s) 2143
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 6 cut(s) 5, 160, 774, 792, 1805, 1982
PflMI CCANNNNNTGG 3 cut(s) 590, 827, 931
PfoI TCCNGGA 1 cut(s) 629
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 2 cut(s) 535, 1615
PspFI CCCAGC 3 cut(s) 924, 1106, 1120
PspPI GGNCC 7 cut(s) 52, 134, 470, 505, 856, 1205, 2153
PspXI VCTCGAGB 2 cut(s) 485, 1329
PstI CTGCAG 2 cut(s) 919, 1581
PsuI RGATCY 1 cut(s) 884
PvuII CAGCTG 2 cut(s) 1154, 2000
RsaI GTAC 4 cut(s) 734, 749, 1271, 1379
RsaNI GTAC 4 cut(s) 733, 748, 1270, 1378
RseI CAYNNNNRTG 2 cut(s) 786, 2129
SacI GAGCTC 2 cut(s) 535, 1615
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 1635, 2016, 2085
Sau3AI GATC 5 cut(s) 39, 598, 884, 1058, 1456
Sau96I GGNCC 7 cut(s) 52, 134, 470, 505, 856, 1205, 2153
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 6 cut(s) 631, 1274, 1936, 1937, 1958, 2165
SduI GDGCHC 6 cut(s) 486, 535, 655, 1615, 1893, 1936
SfaNI GCATC 6 cut(s) 991, 1315, 1609, 1690, 1981, 2078
SfcI CTRYAG 4 cut(s) 769, 915, 1577, 1794
Sfr274I CTCGAG 2 cut(s) 485, 1329
SfuI TTCGAA 1 cut(s) 364
SgrAI CRCCGGYG 1 cut(s) 2141
SinI GGWCC 5 cut(s) 52, 470, 505, 856, 1205
SlaI CTCGAG 2 cut(s) 485, 1329
SmaI CCCGGG 1 cut(s) 1937
SmiMI CAYNNNNRTG 2 cut(s) 786, 2129
SmlI CTYRAG 7 cut(s) 34, 164, 292, 485, 845, 1126, 1329
SmoI CTYRAG 7 cut(s) 34, 164, 292, 485, 845, 1126, 1329
Sse9I AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1636, 2094
SsiI CCGC 5 cut(s) 642, 661, 1017, 1964, 2139
SspMI CTAG 7 cut(s) 741, 765, 1466, 1473, 1725, 1877, 1968
SstI GAGCTC 2 cut(s) 535, 1615
StyD4I CCNGG 6 cut(s) 629, 1272, 1934, 1935, 1956, 2163
StyI CCWWGG 3 cut(s) 100, 2099, 2116
TaaI ACNGT 7 cut(s) 467, 623, 1100, 1282, 1789, 1820, 1829
TaiI ACGT 2 cut(s) 417, 1182
TaqI TCGA 5 cut(s) 272, 364, 486, 1057, 1330
TasI AATT 7 cut(s) 439, 703, 1049, 1186, 1224, 1636, 2094
TatI WGTACW 2 cut(s) 732, 1377
TauI GCSGC 3 cut(s) 1019, 1967, 2141
TfiI GAWTC 6 cut(s) 5, 160, 774, 792, 1805, 1982
Tru1I TTAA 3 cut(s) 1635, 2016, 2085
Tru9I TTAA 3 cut(s) 1635, 2016, 2085
TscAI CASTG 7 cut(s) 685, 1737, 1825, 1834, 1873, 2046, 2064
TseFI GTSAC 2 cut(s) 1410, 1820
Tsp45I GTSAC 2 cut(s) 1410, 1820
TspDTI ATGAA 9 cut(s) 27, 414, 432, 452, 885, 1109, 1677, 1682, 1974
TspGWI ACGGA 1 cut(s) 664
TspMI CCCGGG 1 cut(s) 1935
TspRI CASTG 7 cut(s) 685, 1737, 1825, 1834, 1873, 2046, 2064
Van91I CCANNNNNTGG 3 cut(s) 590, 827, 931
VpaK11BI GGWCC 5 cut(s) 52, 470, 505, 856, 1205
XapI RAATTY 5 cut(s) 439, 703, 1049, 1224, 2094
XcmI CCANNNNNNNNNTGG 1 cut(s) 2056
XhoI CTCGAG 2 cut(s) 485, 1329
XmaI CCCGGG 1 cut(s) 1935
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 7 cut(s) 741, 765, 1466, 1473, 1725, 1877, 1968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.