pycom11g16570

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
18250445 .. 18253492
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16570.1

Sequence Viewer

Length: 1923 bp
ATGGATTCTTATGAAGCTACCAAGATTGTTTTCTCAAGGATCCAAAGCTTGGACCCAGAAAATGCCTCAAAAATCATGGGGTACCTTCTGCTGCAAGAGCATGGCGACAAGGAGATGATACGTATGGCATTCGGACCAGAAACTCTCCTGCACAATCTCCTTCTCAACGCCAAAACACAACTCTCCCTACTTCCTGCCAACAACCCTGCTTCTACTTGTACCCCTACTACTGCTACTTTCACCCCCATCTCCAGGCCTACCCCTTTGTCCCTCTCCTCCTCCTCCTTCTCCTCCCCCTCCTCCTCTTCTTCCTCAACCATTTGGTCCCTCTCCAATCCCATAAGTCCCTCCTCTGCTTCTTCTCCCTCCTATGCCAATATTCTTACTAGAAACACTAACCCTACTTCTCTCTCTGCTTCTAGTAGTGAAGTTGTTGAAAAATACCAGTTTCAGAGCAACCTTTCTTTTCTCAGTGATCCAAAAACTGATGACTTATTTTATGGGGCTGAAGATTTGAGTTCTGGGGGGGGATGGAAACCATGTTTGTACTATTTAAGGGGGTTCTGTAAAAACGGAAGCGCCTGCCGTTTTCTCCACGGCGACTCCGCCAGTACTGACGGAGGTAGCTCCGTTAATGTTGACTCTCCAAGCAATGCCAATGTGCTTGAACAGTGCCATGAGATAATCAGATCCAATGCCGCTGCTCAGCAGCAGAAACTAGCCGCACTGTCACACTTAATGGCTGCTGGTGGTGGTGGTGGTGGTGCTTCCTCTTTCCCATATAACAAGTGCATGAATTTTCTTATGCAACAACAAAATGAATCCCCAAGGTCAGCAGCATCTGTATTGATGACGGGAGACGAAGTTCAGAAGTTTGGGAGATACCAACATGATCGAAACGATTTTTCGCCCTTAAATTTGGGAGGAAACGTGAATCACAGTTCAAGGCAGATCTACTTGACATTCCCAGCTGACAGTCCGTTTAGAGAAGAAGATGTCTCTAATTATTTTAGCATATATGGACCAGTGCAAGATGTGAGGATTCCATACCAGCAAAGGAGGATGTTTGGATTTGTTACATTCGTCTACTCCGAGACTGTGAGGAACATTTTGGCGAAAGGGAATCCTCATTTCGTATGTGATTCCCGGGTGCTTGTGAAGCCTTACAAGGAGAAGGGAAAAATCCCAGACAAGAAGCAACAACACCAACCGTTTGAGAGGGAAGACTATCATCTGTGTAGAAGCCTGTCCGCCATCGATTCAAGGGAGCGTTATGACCTGAATCTTGGATCAAGGATGTTTTACAATACAGAAGACATGCTTTTGAGAAGGAAATTAGAGGAGCAGGCTAATTTGCAGCAAGCCATTGAAATCCAAGAAAGGAGACTTATGAACCTCCAACTTCTAGGCATCAAAACCAACAACCTTCATCATCAGAATCAGTACTACAATGGTTTATCACAAGGCTCTCCATTTCCCTCACCAACTTTGTCTCATGCATCCAAAAATCAATCCCTCAATTTTTCACCCAAAGACAGTAATGAAGAATTCACACAAGAATATGAAGCTGAAAAACTGCAGCAGGAGATGAATCCAGCTTTTAACCATGGAAATGAAGATAACAATGGCAACGATTTTAAATTGCATGAAAGTATGGAGCACAATCTCCCTGATAGCCTATCTGCATCTCCAAAGAAATCAGCTGCAGGAGACCAAATAAATGTCTTCTCAACTACTACTTCTGCACAAGTTAATACTGAAAGCAGCAGAGCCACAACCATTTCCTCCAATAATAATAATAATATTAATATTAATAATACTAATAATAATAATAATTTATTGCCTACCACTTTTATCTCAAATGCAGATTCCTCAAAATCTGTTCTTTCCAAATGCGCAGGTTTCCTTTTGGAATGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

641

Amino Acids

70.87

Weight (kDa)

6.08

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PABC_AtC3H46 PF23182 1 - 65 1.9e-33 AtC3H46 PABC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1897
Acc36I ACCTGC 1 cut(s) 1889
Acc65I GGTACC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 49
AccI GTMKAC 1 cut(s) 1086
AciI CCGC 4 cut(s) 606, 699, 723, 1251
AclWI GGATC 5 cut(s) 34, 47, 470, 684, 1297
AcsI RAATTY 3 cut(s) 796, 916, 1547
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 5 cut(s) 83, 220, 548, 613, 1445
AfiI CCNNNNNNNGG 2 cut(s) 49, 252
AgsI TTSAA 5 cut(s) 437, 668, 945, 1263, 1370
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AloI GAACNNNNNNTCC 2 cut(s) 849, 881
AluBI AGCT 7 cut(s) 17, 48, 627, 971, 1568, 1598, 1703
AluI AGCT 7 cut(s) 17, 48, 627, 971, 1568, 1598, 1703
Alw21I GWGCWC 1 cut(s) 1662
Alw26I GTCTC 6 cut(s) 852, 1003, 1088, 1378, 1497, 1704
AlwI GGATC 5 cut(s) 34, 47, 470, 684, 1297
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 1146
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 9 cut(s) 91, 701, 709, 743, 836, 1357, 1579, 1703, 1764
ApoI RAATTY 3 cut(s) 796, 916, 1547
AseI ATTAAT 2 cut(s) 1806, 1812
Asp718I GGTACC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 581, 1898
AspS9I GGNCC 4 cut(s) 52, 134, 324, 1022
AsuC2I CCSGG 2 cut(s) 1147, 1148
AsuHPI GGTGA 3 cut(s) 232, 1473, 1518
AvaI CYCGRG 1 cut(s) 1146
AvaII GGWCC 4 cut(s) 52, 134, 324, 1022
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 81
BbsI GAAGAC 3 cut(s) 1230, 1320, 1717
Bbv12I GWGCWC 1 cut(s) 1662
BbvI GCAGC 9 cut(s) 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776
BccI CCATC 3 cut(s) 254, 525, 1262
BceAI ACGGC 2 cut(s) 570, 613
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 2 cut(s) 1147, 1148
BcoDI GTCTC 6 cut(s) 852, 1003, 1088, 1378, 1497, 1704
BfaI CTAG 4 cut(s) 387, 420, 719, 1406
BfmI CTRYAG 2 cut(s) 1577, 1704
BfoI RGCGCY 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 1889
BglII AGATCT 1 cut(s) 951
BlpI GCTNAGC 1 cut(s) 705
BmcAI AGTACT 2 cut(s) 613, 1445
Bme1390I CCNGG 3 cut(s) 253, 1147, 1148
Bme18I GGWCC 4 cut(s) 52, 134, 324, 1022
BmeT110I CYCGRG 1 cut(s) 1146
BmgT120I GGNCC 4 cut(s) 52, 134, 324, 1022
BmiI GGNNCC 4 cut(s) 41, 54, 83, 326
BmrFI CCNGG 3 cut(s) 253, 1147, 1148
BmsI GCATC 4 cut(s) 848, 1419, 1508, 1694
BpiI GAAGAC 3 cut(s) 1230, 1320, 1717
BpmI CTGGAG 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 1147, 1148
Bsa29I ATCGAT 1 cut(s) 1257
BsaAI YACGTR 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 1704
BsaJI CCNNGG 4 cut(s) 595, 827, 1146, 1606
BsaXI ACNNNNNCTCC 6 cut(s) 587, 617, 849, 879, 915, 945
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 252
Bse1I ACTGG 3 cut(s) 445, 609, 1025
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 1257
BseDI CCNNGG 4 cut(s) 595, 827, 1146, 1606
BseGI GGATG 4 cut(s) 536, 1068, 1302, 1499
BseLI CCNNNNNNNGG 2 cut(s) 49, 252
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 2 cut(s) 484, 719
BseNI ACTGG 3 cut(s) 445, 609, 1025
BseRI GAGGAG 8 cut(s) 265, 268, 271, 280, 289, 292, 340, 1355
BseXI GCAGC 9 cut(s) 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776
BseYI CCCAGC 1 cut(s) 967
BsgI GTGCAG 2 cut(s) 134, 1728
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 1257
BsiHKAI GWGCWC 1 cut(s) 1662
BsiHKCI CYCGRG 1 cut(s) 1146
BsiSI CCGG 1 cut(s) 1147
BslFI GGGAC 3 cut(s) 253, 310, 330
BslI CCNNNNNNNGG 2 cut(s) 49, 252
BsmAI GTCTC 6 cut(s) 852, 1003, 1088, 1378, 1497, 1704
BsmBI CGTCTC 1 cut(s) 852
BsmFI GGGAC 3 cut(s) 253, 310, 330
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 256
Bso31I GGTCTC 1 cut(s) 1704
BsoBI CYCGRG 1 cut(s) 1146
Bsp1286I GDGCHC 1 cut(s) 1662
Bsp143I GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
Bsp1720I GCTNAGC 1 cut(s) 705
Bsp19I CCATGG 1 cut(s) 1606
BspACI CCGC 4 cut(s) 606, 699, 723, 1251
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 483, 718
BspDI ATCGAT 1 cut(s) 1257
BspLI GGNNCC 4 cut(s) 41, 54, 83, 326
BspMAI CTGCAG 2 cut(s) 1581, 1708
BspMI ACCTGC 1 cut(s) 1889
BspPI GGATC 5 cut(s) 34, 47, 470, 684, 1297
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 1704
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 3 cut(s) 445, 609, 1025
BssECI CCNNGG 4 cut(s) 595, 827, 1146, 1606
BssMI GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
BssT1I CCWWGG 2 cut(s) 827, 1606
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 7 cut(s) 672, 729, 941, 977, 1099, 1212, 1538
Bst6I CTCTTC 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 583, 1347, 1362
BstDEI CTNAG 2 cut(s) 470, 705
BstDSI CCRYGG 2 cut(s) 595, 1606
BstF5I GGATG 4 cut(s) 536, 1068, 1302, 1499
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 581, 1898
BstKTI GATC 6 cut(s) 42, 478, 692, 895, 954, 1292
BstMAI GTCTC 6 cut(s) 852, 1003, 1088, 1378, 1497, 1704
BstMBI GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
BstMWI GCNNNNNNNGC 2 cut(s) 97, 1159
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 1321
BstSCI CCNGG 3 cut(s) 251, 1145, 1146
BstSFI CTRYAG 2 cut(s) 1577, 1704
BstSNI TACGTA 1 cut(s) 122
BstV1I GCAGC 9 cut(s) 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776
BstV2I GAAGAC 3 cut(s) 1230, 1320, 1717
BstX2I RGATCY 3 cut(s) 39, 689, 951
BstYI RGATCY 3 cut(s) 39, 689, 951
Bsu15I ATCGAT 1 cut(s) 1257
BsuRI GGCC 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 595, 1606
BtsCI GGATG 4 cut(s) 536, 1068, 1302, 1499
BtsIMutI CAGTG 4 cut(s) 478, 677, 725, 1032
BveI ACCTGC 1 cut(s) 1889
Cac8I GCNNGC 3 cut(s) 583, 1347, 1362
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 2 cut(s) 581, 1898
Cfr13I GGNCC 4 cut(s) 52, 134, 324, 1022
Cfr9I CCCGGG 1 cut(s) 1146
ClaI ATCGAT 1 cut(s) 1257
Csp6I GTAC 5 cut(s) 82, 219, 547, 612, 1444
CviQI GTAC 5 cut(s) 82, 219, 547, 612, 1444
DdeI CTNAG 2 cut(s) 470, 705
DpnI GATC 6 cut(s) 41, 477, 691, 894, 953, 1291
DpnII GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
DraI TTTAAA 1 cut(s) 1639
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 2 cut(s) 595, 1240
Eco105I TACGTA 1 cut(s) 122
Eco130I CCWWGG 2 cut(s) 827, 1606
Eco147I AGGCCT 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 1704
Eco47I GGWCC 4 cut(s) 52, 134, 324, 1022
Eco57I CTGAAG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 1146
EcoRI GAATTC 1 cut(s) 1547
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 827, 1606
EcoT22I ATGCAT 1 cut(s) 1501
ErhI CCWWGG 2 cut(s) 827, 1606
Esp3I CGTCTC 1 cut(s) 852
FalI AAGNNNNNCTT 2 cut(s) 1305, 1337
FaqI GGGAC 3 cut(s) 253, 310, 330
FblI GTMKAC 1 cut(s) 1086
FokI GGATG 4 cut(s) 543, 1075, 1309, 1486
FspBI CTAG 4 cut(s) 387, 420, 719, 1406
FspI TGCGCA 1 cut(s) 1897
GlaI GCGC 2 cut(s) 580, 1897
GsaI CCCAGC 1 cut(s) 971
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 1147
HhaI GCGC 2 cut(s) 581, 1898
Hin6I GCGC 2 cut(s) 579, 1896
HinP1I GCGC 2 cut(s) 579, 1896
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 46
HpaII CCGG 1 cut(s) 1147
HphI GGTGA 3 cut(s) 232, 1473, 1518
Hpy166II GTNNAC 2 cut(s) 640, 1087
Hpy188I TCNGA 6 cut(s) 134, 453, 689, 870, 1093, 1437
Hpy8I GTNNAC 2 cut(s) 640, 1087
HpyAV CCTTC 6 cut(s) 95, 170, 295, 1168, 1323, 1436
HpyCH4III ACNGT 7 cut(s) 672, 729, 941, 977, 1099, 1212, 1538
HpyCH4IV ACGT 2 cut(s) 121, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 1159
HpyF3I CTNAG 2 cut(s) 470, 705
HpySE526I ACGT 2 cut(s) 121, 930
HspAI GCGC 2 cut(s) 579, 1896
KpnI GGTACC 1 cut(s) 85
Kzo9I GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
LmnI GCTCC 4 cut(s) 632, 1267, 1342, 1657
Lsp1109I GCAGC 9 cut(s) 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776
LweI GCATC 4 cut(s) 848, 1419, 1508, 1694
MaeI CTAG 4 cut(s) 387, 420, 719, 1406
MaeII ACGT 2 cut(s) 121, 930
MaeIII GTNAC 2 cut(s) 729, 1075
MalI GATC 6 cut(s) 41, 477, 691, 894, 953, 1291
MboI GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
MflI RGATCY 3 cut(s) 39, 689, 951
MhlI GDGCHC 1 cut(s) 1662
MlyI GAGTC 2 cut(s) 596, 635
MmeI TCCRAC 1 cut(s) 1423
Mph1103I ATGCAT 1 cut(s) 1501
MslI CAYNNNNRTG 1 cut(s) 1611
MspA1I CMGCKG 3 cut(s) 701, 971, 1703
MspI CCGG 1 cut(s) 1147
MspR9I CCNGG 3 cut(s) 253, 1147, 1148
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 97, 1159
NciI CCSGG 2 cut(s) 1147, 1148
NcoI CCATGG 1 cut(s) 1606
NdeII GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
NlaIV GGNNCC 4 cut(s) 41, 54, 83, 326
NmuCI GTSAC 1 cut(s) 729
NsbI TGCGCA 1 cut(s) 1897
NsiI ATGCAT 1 cut(s) 1501
NspI RCATGY 1 cut(s) 1321
PceI AGGCCT 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 49
PleI GAGTC 2 cut(s) 596, 635
PpsI GAGTC 2 cut(s) 596, 635
Ppu21I YACGTR 1 cut(s) 122
PshBI ATTAAT 2 cut(s) 1806, 1812
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 967
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 41, 54, 83, 326
PspPI GGNCC 4 cut(s) 52, 134, 324, 1022
PstI CTGCAG 2 cut(s) 1581, 1708
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 3 cut(s) 39, 689, 951
PvuII CAGCTG 2 cut(s) 971, 1703
RsaI GTAC 5 cut(s) 83, 220, 548, 613, 1445
RsaNI GTAC 5 cut(s) 82, 219, 547, 612, 1444
RseI CAYNNNNRTG 1 cut(s) 1611
Sau3AI GATC 6 cut(s) 39, 475, 689, 892, 951, 1289
Sau96I GGNCC 4 cut(s) 52, 134, 324, 1022
ScaI AGTACT 2 cut(s) 613, 1445
SchI GAGTC 2 cut(s) 596, 635
ScrFI CCNGG 3 cut(s) 253, 1147, 1148
SduI GDGCHC 1 cut(s) 1662
SfaNI GCATC 4 cut(s) 848, 1419, 1508, 1694
SfcI CTRYAG 2 cut(s) 1577, 1704
SinI GGWCC 4 cut(s) 52, 134, 324, 1022
SmaI CCCGGG 1 cut(s) 1148
SmiMI CAYNNNNRTG 1 cut(s) 1611
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SnaBI TACGTA 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 256
SsiI CCGC 4 cut(s) 606, 699, 723, 1251
SspI AATATT 3 cut(s) 379, 1804, 1810
SspMI CTAG 4 cut(s) 387, 420, 719, 1406
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 3 cut(s) 251, 1145, 1146
StyI CCWWGG 2 cut(s) 827, 1606
TaaI ACNGT 7 cut(s) 672, 729, 941, 977, 1099, 1212, 1538
TaiI ACGT 2 cut(s) 124, 933
TaqI TCGA 2 cut(s) 895, 1257
TatI WGTACW 3 cut(s) 546, 611, 1443
TauI GCSGC 2 cut(s) 701, 725
TscAI CASTG 4 cut(s) 478, 677, 732, 1032
TseFI GTSAC 1 cut(s) 729
TseI GCWGC 9 cut(s) 91, 701, 709, 743, 836, 1357, 1579, 1703, 1764
Tsp45I GTSAC 1 cut(s) 729
TspGWI ACGGA 4 cut(s) 588, 619, 633, 969
TspMI CCCGGG 1 cut(s) 1146
TspRI CASTG 4 cut(s) 478, 677, 732, 1032
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 4 cut(s) 52, 134, 324, 1022
VspI ATTAAT 2 cut(s) 1806, 1812
XapI RAATTY 3 cut(s) 796, 916, 1547
XceI RCATGY 1 cut(s) 1321
XmaI CCCGGG 1 cut(s) 1146
XmiI GTMKAC 1 cut(s) 1086
XspI CTAG 4 cut(s) 387, 420, 719, 1406
ZrmI AGTACT 2 cut(s) 613, 1445
Zsp2I ATGCAT 1 cut(s) 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.