zinc finger CCCH domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PABC_AtC3H46 | PF23182 | 1 - 65 | 1.9e-33 | AtC3H46 PABC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1897 |
| Acc36I | ACCTGC | 1 cut(s) | 1889 |
| Acc65I | GGTACC | 1 cut(s) | 81 |
| AccB1I | GGYRCC | 1 cut(s) | 81 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 49 |
| AccI | GTMKAC | 1 cut(s) | 1086 |
| AciI | CCGC | 4 cut(s) | 606, 699, 723, 1251 |
| AclWI | GGATC | 5 cut(s) | 34, 47, 470, 684, 1297 |
| AcsI | RAATTY | 3 cut(s) | 796, 916, 1547 |
| AcuI | CTGAAG | 1 cut(s) | 528 |
| AfaI | GTAC | 5 cut(s) | 83, 220, 548, 613, 1445 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| AgsI | TTSAA | 5 cut(s) | 437, 668, 945, 1263, 1370 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 14, 46 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 849, 881 |
| AluBI | AGCT | 7 cut(s) | 17, 48, 627, 971, 1568, 1598, 1703 |
| AluI | AGCT | 7 cut(s) | 17, 48, 627, 971, 1568, 1598, 1703 |
| Alw21I | GWGCWC | 1 cut(s) | 1662 |
| Alw26I | GTCTC | 6 cut(s) | 852, 1003, 1088, 1378, 1497, 1704 |
| AlwI | GGATC | 5 cut(s) | 34, 47, 470, 684, 1297 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 842 |
| Ama87I | CYCGRG | 1 cut(s) | 1146 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 9 cut(s) | 91, 701, 709, 743, 836, 1357, 1579, 1703, 1764 |
| ApoI | RAATTY | 3 cut(s) | 796, 916, 1547 |
| AseI | ATTAAT | 2 cut(s) | 1806, 1812 |
| Asp718I | GGTACC | 1 cut(s) | 81 |
| AspLEI | GCGC | 2 cut(s) | 581, 1898 |
| AspS9I | GGNCC | 4 cut(s) | 52, 134, 324, 1022 |
| AsuC2I | CCSGG | 2 cut(s) | 1147, 1148 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 1473, 1518 |
| AvaI | CYCGRG | 1 cut(s) | 1146 |
| AvaII | GGWCC | 4 cut(s) | 52, 134, 324, 1022 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BanI | GGYRCC | 1 cut(s) | 81 |
| BbsI | GAAGAC | 3 cut(s) | 1230, 1320, 1717 |
| Bbv12I | GWGCWC | 1 cut(s) | 1662 |
| BbvI | GCAGC | 9 cut(s) | 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776 |
| BccI | CCATC | 3 cut(s) | 254, 525, 1262 |
| BceAI | ACGGC | 2 cut(s) | 570, 613 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BcnI | CCSGG | 2 cut(s) | 1147, 1148 |
| BcoDI | GTCTC | 6 cut(s) | 852, 1003, 1088, 1378, 1497, 1704 |
| BfaI | CTAG | 4 cut(s) | 387, 420, 719, 1406 |
| BfmI | CTRYAG | 2 cut(s) | 1577, 1704 |
| BfoI | RGCGCY | 1 cut(s) | 582 |
| BfuAI | ACCTGC | 1 cut(s) | 1889 |
| BglII | AGATCT | 1 cut(s) | 951 |
| BlpI | GCTNAGC | 1 cut(s) | 705 |
| BmcAI | AGTACT | 2 cut(s) | 613, 1445 |
| Bme1390I | CCNGG | 3 cut(s) | 253, 1147, 1148 |
| Bme18I | GGWCC | 4 cut(s) | 52, 134, 324, 1022 |
| BmeT110I | CYCGRG | 1 cut(s) | 1146 |
| BmgT120I | GGNCC | 4 cut(s) | 52, 134, 324, 1022 |
| BmiI | GGNNCC | 4 cut(s) | 41, 54, 83, 326 |
| BmrFI | CCNGG | 3 cut(s) | 253, 1147, 1148 |
| BmsI | GCATC | 4 cut(s) | 848, 1419, 1508, 1694 |
| BpiI | GAAGAC | 3 cut(s) | 1230, 1320, 1717 |
| BpmI | CTGGAG | 1 cut(s) | 235 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 705 |
| BpuEI | CTTGAG | 1 cut(s) | 19 |
| BpuMI | CCSGG | 2 cut(s) | 1147, 1148 |
| Bsa29I | ATCGAT | 1 cut(s) | 1257 |
| BsaAI | YACGTR | 1 cut(s) | 122 |
| BsaI | GGTCTC | 1 cut(s) | 1704 |
| BsaJI | CCNNGG | 4 cut(s) | 595, 827, 1146, 1606 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 587, 617, 849, 879, 915, 945 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| Bse1I | ACTGG | 3 cut(s) | 445, 609, 1025 |
| Bse3DI | GCAATG | 1 cut(s) | 658 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseCI | ATCGAT | 1 cut(s) | 1257 |
| BseDI | CCNNGG | 4 cut(s) | 595, 827, 1146, 1606 |
| BseGI | GGATG | 4 cut(s) | 536, 1068, 1302, 1499 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| BseMI | GCAATG | 1 cut(s) | 658 |
| BseMII | CTCAG | 2 cut(s) | 484, 719 |
| BseNI | ACTGG | 3 cut(s) | 445, 609, 1025 |
| BseRI | GAGGAG | 8 cut(s) | 265, 268, 271, 280, 289, 292, 340, 1355 |
| BseXI | GCAGC | 9 cut(s) | 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776 |
| BseYI | CCCAGC | 1 cut(s) | 967 |
| BsgI | GTGCAG | 2 cut(s) | 134, 1728 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BshNI | GGYRCC | 1 cut(s) | 81 |
| BshVI | ATCGAT | 1 cut(s) | 1257 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1662 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1146 |
| BsiSI | CCGG | 1 cut(s) | 1147 |
| BslFI | GGGAC | 3 cut(s) | 253, 310, 330 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 252 |
| BsmAI | GTCTC | 6 cut(s) | 852, 1003, 1088, 1378, 1497, 1704 |
| BsmBI | CGTCTC | 1 cut(s) | 852 |
| BsmFI | GGGAC | 3 cut(s) | 253, 310, 330 |
| BsmI | GAATGC | 1 cut(s) | 128 |
| BsnI | GGCC | 1 cut(s) | 256 |
| Bso31I | GGTCTC | 1 cut(s) | 1704 |
| BsoBI | CYCGRG | 1 cut(s) | 1146 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1662 |
| Bsp143I | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 705 |
| Bsp19I | CCATGG | 1 cut(s) | 1606 |
| BspACI | CCGC | 4 cut(s) | 606, 699, 723, 1251 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspCNI | CTCAG | 2 cut(s) | 483, 718 |
| BspDI | ATCGAT | 1 cut(s) | 1257 |
| BspLI | GGNNCC | 4 cut(s) | 41, 54, 83, 326 |
| BspMAI | CTGCAG | 2 cut(s) | 1581, 1708 |
| BspMI | ACCTGC | 1 cut(s) | 1889 |
| BspPI | GGATC | 5 cut(s) | 34, 47, 470, 684, 1297 |
| BspT107I | GGYRCC | 1 cut(s) | 81 |
| BspTNI | GGTCTC | 1 cut(s) | 1704 |
| BsrDI | GCAATG | 1 cut(s) | 658 |
| BsrI | ACTGG | 3 cut(s) | 445, 609, 1025 |
| BssECI | CCNNGG | 4 cut(s) | 595, 827, 1146, 1606 |
| BssMI | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| BssT1I | CCWWGG | 2 cut(s) | 827, 1606 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| Bst4CI | ACNGT | 7 cut(s) | 672, 729, 941, 977, 1099, 1212, 1538 |
| Bst6I | CTCTTC | 1 cut(s) | 310 |
| BstBAI | YACGTR | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 3 cut(s) | 583, 1347, 1362 |
| BstDEI | CTNAG | 2 cut(s) | 470, 705 |
| BstDSI | CCRYGG | 2 cut(s) | 595, 1606 |
| BstF5I | GGATG | 4 cut(s) | 536, 1068, 1302, 1499 |
| BstH2I | RGCGCY | 1 cut(s) | 582 |
| BstHHI | GCGC | 2 cut(s) | 581, 1898 |
| BstKTI | GATC | 6 cut(s) | 42, 478, 692, 895, 954, 1292 |
| BstMAI | GTCTC | 6 cut(s) | 852, 1003, 1088, 1378, 1497, 1704 |
| BstMBI | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 97, 1159 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstNSI | RCATGY | 1 cut(s) | 1321 |
| BstSCI | CCNGG | 3 cut(s) | 251, 1145, 1146 |
| BstSFI | CTRYAG | 2 cut(s) | 1577, 1704 |
| BstSNI | TACGTA | 1 cut(s) | 122 |
| BstV1I | GCAGC | 9 cut(s) | 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776 |
| BstV2I | GAAGAC | 3 cut(s) | 1230, 1320, 1717 |
| BstX2I | RGATCY | 3 cut(s) | 39, 689, 951 |
| BstYI | RGATCY | 3 cut(s) | 39, 689, 951 |
| Bsu15I | ATCGAT | 1 cut(s) | 1257 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| BsuTUI | ATCGAT | 1 cut(s) | 1257 |
| BtgI | CCRYGG | 2 cut(s) | 595, 1606 |
| BtsCI | GGATG | 4 cut(s) | 536, 1068, 1302, 1499 |
| BtsIMutI | CAGTG | 4 cut(s) | 478, 677, 725, 1032 |
| BveI | ACCTGC | 1 cut(s) | 1889 |
| Cac8I | GCNNGC | 3 cut(s) | 583, 1347, 1362 |
| CaiI | CAGNNNCTG | 1 cut(s) | 842 |
| CfoI | GCGC | 2 cut(s) | 581, 1898 |
| Cfr13I | GGNCC | 4 cut(s) | 52, 134, 324, 1022 |
| Cfr9I | CCCGGG | 1 cut(s) | 1146 |
| ClaI | ATCGAT | 1 cut(s) | 1257 |
| Csp6I | GTAC | 5 cut(s) | 82, 219, 547, 612, 1444 |
| CviQI | GTAC | 5 cut(s) | 82, 219, 547, 612, 1444 |
| DdeI | CTNAG | 2 cut(s) | 470, 705 |
| DpnI | GATC | 6 cut(s) | 41, 477, 691, 894, 953, 1291 |
| DpnII | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| DraI | TTTAAA | 1 cut(s) | 1639 |
| Eam1104I | CTCTTC | 1 cut(s) | 310 |
| EarI | CTCTTC | 1 cut(s) | 310 |
| EciI | GGCGGA | 2 cut(s) | 595, 1240 |
| Eco105I | TACGTA | 1 cut(s) | 122 |
| Eco130I | CCWWGG | 2 cut(s) | 827, 1606 |
| Eco147I | AGGCCT | 1 cut(s) | 256 |
| Eco31I | GGTCTC | 1 cut(s) | 1704 |
| Eco47I | GGWCC | 4 cut(s) | 52, 134, 324, 1022 |
| Eco57I | CTGAAG | 1 cut(s) | 528 |
| Eco88I | CYCGRG | 1 cut(s) | 1146 |
| EcoRI | GAATTC | 1 cut(s) | 1547 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 2 cut(s) | 827, 1606 |
| EcoT22I | ATGCAT | 1 cut(s) | 1501 |
| ErhI | CCWWGG | 2 cut(s) | 827, 1606 |
| Esp3I | CGTCTC | 1 cut(s) | 852 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1305, 1337 |
| FaqI | GGGAC | 3 cut(s) | 253, 310, 330 |
| FblI | GTMKAC | 1 cut(s) | 1086 |
| FokI | GGATG | 4 cut(s) | 543, 1075, 1309, 1486 |
| FspBI | CTAG | 4 cut(s) | 387, 420, 719, 1406 |
| FspI | TGCGCA | 1 cut(s) | 1897 |
| GlaI | GCGC | 2 cut(s) | 580, 1897 |
| GsaI | CCCAGC | 1 cut(s) | 971 |
| GsuI | CTGGAG | 1 cut(s) | 235 |
| HaeII | RGCGCY | 1 cut(s) | 582 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| HapII | CCGG | 1 cut(s) | 1147 |
| HhaI | GCGC | 2 cut(s) | 581, 1898 |
| Hin6I | GCGC | 2 cut(s) | 579, 1896 |
| HinP1I | GCGC | 2 cut(s) | 579, 1896 |
| HincII | GTYRAC | 1 cut(s) | 640 |
| HindII | GTYRAC | 1 cut(s) | 640 |
| HindIII | AAGCTT | 1 cut(s) | 46 |
| HpaII | CCGG | 1 cut(s) | 1147 |
| HphI | GGTGA | 3 cut(s) | 232, 1473, 1518 |
| Hpy166II | GTNNAC | 2 cut(s) | 640, 1087 |
| Hpy188I | TCNGA | 6 cut(s) | 134, 453, 689, 870, 1093, 1437 |
| Hpy8I | GTNNAC | 2 cut(s) | 640, 1087 |
| HpyAV | CCTTC | 6 cut(s) | 95, 170, 295, 1168, 1323, 1436 |
| HpyCH4III | ACNGT | 7 cut(s) | 672, 729, 941, 977, 1099, 1212, 1538 |
| HpyCH4IV | ACGT | 2 cut(s) | 121, 930 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 97, 1159 |
| HpyF3I | CTNAG | 2 cut(s) | 470, 705 |
| HpySE526I | ACGT | 2 cut(s) | 121, 930 |
| HspAI | GCGC | 2 cut(s) | 579, 1896 |
| KpnI | GGTACC | 1 cut(s) | 85 |
| Kzo9I | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| LmnI | GCTCC | 4 cut(s) | 632, 1267, 1342, 1657 |
| Lsp1109I | GCAGC | 9 cut(s) | 78, 688, 721, 730, 848, 1369, 1591, 1690, 1776 |
| LweI | GCATC | 4 cut(s) | 848, 1419, 1508, 1694 |
| MaeI | CTAG | 4 cut(s) | 387, 420, 719, 1406 |
| MaeII | ACGT | 2 cut(s) | 121, 930 |
| MaeIII | GTNAC | 2 cut(s) | 729, 1075 |
| MalI | GATC | 6 cut(s) | 41, 477, 691, 894, 953, 1291 |
| MboI | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| MflI | RGATCY | 3 cut(s) | 39, 689, 951 |
| MhlI | GDGCHC | 1 cut(s) | 1662 |
| MlyI | GAGTC | 2 cut(s) | 596, 635 |
| MmeI | TCCRAC | 1 cut(s) | 1423 |
| Mph1103I | ATGCAT | 1 cut(s) | 1501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1611 |
| MspA1I | CMGCKG | 3 cut(s) | 701, 971, 1703 |
| MspI | CCGG | 1 cut(s) | 1147 |
| MspR9I | CCNGG | 3 cut(s) | 253, 1147, 1148 |
| Mva1269I | GAATGC | 1 cut(s) | 128 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 97, 1159 |
| NciI | CCSGG | 2 cut(s) | 1147, 1148 |
| NcoI | CCATGG | 1 cut(s) | 1606 |
| NdeII | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| NlaIV | GGNNCC | 4 cut(s) | 41, 54, 83, 326 |
| NmuCI | GTSAC | 1 cut(s) | 729 |
| NsbI | TGCGCA | 1 cut(s) | 1897 |
| NsiI | ATGCAT | 1 cut(s) | 1501 |
| NspI | RCATGY | 1 cut(s) | 1321 |
| PceI | AGGCCT | 1 cut(s) | 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1089 |
| PctI | GAATGC | 1 cut(s) | 128 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 49 |
| PleI | GAGTC | 2 cut(s) | 596, 635 |
| PpsI | GAGTC | 2 cut(s) | 596, 635 |
| Ppu21I | YACGTR | 1 cut(s) | 122 |
| PshBI | ATTAAT | 2 cut(s) | 1806, 1812 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspFI | CCCAGC | 1 cut(s) | 967 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 4 cut(s) | 41, 54, 83, 326 |
| PspPI | GGNCC | 4 cut(s) | 52, 134, 324, 1022 |
| PstI | CTGCAG | 2 cut(s) | 1581, 1708 |
| PstNI | CAGNNNCTG | 1 cut(s) | 842 |
| PsuI | RGATCY | 3 cut(s) | 39, 689, 951 |
| PvuII | CAGCTG | 2 cut(s) | 971, 1703 |
| RsaI | GTAC | 5 cut(s) | 83, 220, 548, 613, 1445 |
| RsaNI | GTAC | 5 cut(s) | 82, 219, 547, 612, 1444 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1611 |
| Sau3AI | GATC | 6 cut(s) | 39, 475, 689, 892, 951, 1289 |
| Sau96I | GGNCC | 4 cut(s) | 52, 134, 324, 1022 |
| ScaI | AGTACT | 2 cut(s) | 613, 1445 |
| SchI | GAGTC | 2 cut(s) | 596, 635 |
| ScrFI | CCNGG | 3 cut(s) | 253, 1147, 1148 |
| SduI | GDGCHC | 1 cut(s) | 1662 |
| SfaNI | GCATC | 4 cut(s) | 848, 1419, 1508, 1694 |
| SfcI | CTRYAG | 2 cut(s) | 1577, 1704 |
| SinI | GGWCC | 4 cut(s) | 52, 134, 324, 1022 |
| SmaI | CCCGGG | 1 cut(s) | 1148 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SmlI | CTYRAG | 1 cut(s) | 34 |
| SmoI | CTYRAG | 1 cut(s) | 34 |
| SnaBI | TACGTA | 1 cut(s) | 122 |
| SseBI | AGGCCT | 1 cut(s) | 256 |
| SsiI | CCGC | 4 cut(s) | 606, 699, 723, 1251 |
| SspI | AATATT | 3 cut(s) | 379, 1804, 1810 |
| SspMI | CTAG | 4 cut(s) | 387, 420, 719, 1406 |
| StuI | AGGCCT | 1 cut(s) | 256 |
| StyD4I | CCNGG | 3 cut(s) | 251, 1145, 1146 |
| StyI | CCWWGG | 2 cut(s) | 827, 1606 |
| TaaI | ACNGT | 7 cut(s) | 672, 729, 941, 977, 1099, 1212, 1538 |
| TaiI | ACGT | 2 cut(s) | 124, 933 |
| TaqI | TCGA | 2 cut(s) | 895, 1257 |
| TatI | WGTACW | 3 cut(s) | 546, 611, 1443 |
| TauI | GCSGC | 2 cut(s) | 701, 725 |
| TscAI | CASTG | 4 cut(s) | 478, 677, 732, 1032 |
| TseFI | GTSAC | 1 cut(s) | 729 |
| TseI | GCWGC | 9 cut(s) | 91, 701, 709, 743, 836, 1357, 1579, 1703, 1764 |
| Tsp45I | GTSAC | 1 cut(s) | 729 |
| TspGWI | ACGGA | 4 cut(s) | 588, 619, 633, 969 |
| TspMI | CCCGGG | 1 cut(s) | 1146 |
| TspRI | CASTG | 4 cut(s) | 478, 677, 732, 1032 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 49 |
| VpaK11BI | GGWCC | 4 cut(s) | 52, 134, 324, 1022 |
| VspI | ATTAAT | 2 cut(s) | 1806, 1812 |
| XapI | RAATTY | 3 cut(s) | 796, 916, 1547 |
| XceI | RCATGY | 1 cut(s) | 1321 |
| XmaI | CCCGGG | 1 cut(s) | 1146 |
| XmiI | GTMKAC | 1 cut(s) | 1086 |
| XspI | CTAG | 4 cut(s) | 387, 420, 719, 1406 |
| ZrmI | AGTACT | 2 cut(s) | 613, 1445 |
| Zsp2I | ATGCAT | 1 cut(s) | 1501 |