MD09G1140400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001189
Physical Location & Seq
Forward (+)
10926331 .. 10927504
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1140400.v1.1.491

Sequence Viewer

Length: 546 bp
ATGAGCTTTACGATGGCTAGGTCGCAAGAGCCTTCTTCGGCGCGACGATGTTGGCGGGGAATGAGCCGAAAACGGTGGCTGGGGTGGGAGGTGATGGAGATGATGGACCATGAAGCGCCTCTCAGATCTAAAACCGCTCAGCAGCAGAGGCTTGCTGCTGCTTCTCAGCTCATGGCAGCGTCAGTGAATTCCTTCCCTTACTCCTCCAAGTGCATGAACTTCGTACTTCAGCAGCAACAAACTGATTCGCAAAGGGCAGCGGCAGCTGCCTTGATGATGGGTGATGATATGCACAAGTTCAGCCGATCCCGCCTCGAAAGATCCGATTTTTCGATGGAGGGGAAGGGGGAGCGGGAGGAGAAGGGGAAGGGTTTGGCTCGGAAAAATGGGGAAAATTGGAACTGGAAAATGGGTACTTTGAGGGTGTTGGGTTCGAAGGAGGGGAAGGTAGGGATGGAGATGGTGGTTGAATTGTCGGCGGCGAAGAAGATTCCTGCGGCAGAAATGGCCGATCTGGGCGAAGAAGAAGATGACGACGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

182

Amino Acids

20.36

Weight (kDa)

8.56

Isoelectric Point (pI)

66.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 137, 352
AccII CGCG 1 cut(s) 43
AciI CCGC 7 cut(s) 55, 135, 260, 310, 352, 479, 497
AclWI GGATC 2 cut(s) 300, 315
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 225, 415
AgsI TTSAA 1 cut(s) 470
AjiI CACGTC 1 cut(s) 538
AluBI AGCT 3 cut(s) 6, 169, 266
AluI AGCT 3 cut(s) 6, 169, 266
AlwI GGATC 2 cut(s) 300, 315
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 8 cut(s) 142, 155, 158, 176, 232, 257, 263, 266
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 43, 118
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 103, 293
AsuII TTCGAA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 8 cut(s) 142, 145, 154, 188, 244, 253, 269, 275
BccI CCATC 7 cut(s) 7, 88, 97, 271, 328, 448, 454
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 119
BglII AGATCT 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 459
BseMII CTCAG 3 cut(s) 136, 152, 179
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 193, 371
BseXI GCAGC 8 cut(s) 142, 145, 154, 188, 244, 253, 269, 275
BseYI CCCAGC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 509
BsnI GGCC 1 cut(s) 509
Bsp119I TTCGAA 1 cut(s) 434
Bsp143I GATC 4 cut(s) 125, 305, 320, 511
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 7 cut(s) 55, 135, 260, 310, 352, 479, 497
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 3 cut(s) 135, 151, 178
BspFNI CGCG 1 cut(s) 43
BspPI GGATC 2 cut(s) 300, 315
BspT104I TTCGAA 1 cut(s) 434
BsrBI CCGCTC 2 cut(s) 137, 352
BsrI ACTGG 1 cut(s) 407
BssMI GATC 4 cut(s) 125, 305, 320, 511
Bst4CI ACNGT 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 122, 138, 165
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 43, 118
BstKTI GATC 4 cut(s) 128, 308, 323, 514
BstMBI GATC 4 cut(s) 125, 305, 320, 511
BstMWI GCNNNNNNNGC 5 cut(s) 148, 263, 266, 309, 506
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 8 cut(s) 142, 145, 154, 188, 244, 253, 269, 275
BstX2I RGATCY 2 cut(s) 125, 320
BstYI RGATCY 2 cut(s) 125, 320
BsuRI GGCC 1 cut(s) 509
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 2 cut(s) 43, 118
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 224, 414
CviAII CATG 3 cut(s) 110, 172, 214
CviQI GTAC 2 cut(s) 224, 414
DdeI CTNAG 3 cut(s) 122, 138, 165
DpnI GATC 4 cut(s) 127, 307, 322, 513
DpnII GATC 4 cut(s) 125, 305, 320, 511
EaeI YGGCCR 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 187
FaeI CATG 3 cut(s) 113, 175, 217
FaiI YATR 4 cut(s) 111, 173, 215, 290
FatI CATG 3 cut(s) 109, 171, 213
FauI CCCGC 3 cut(s) 48, 317, 345
FokI GGATG 1 cut(s) 466
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 42, 117
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 509
HgaI GACGC 1 cut(s) 168
HhaI GCGC 2 cut(s) 43, 118
Hin1II CATG 3 cut(s) 113, 175, 217
Hin6I GCGC 2 cut(s) 41, 116
HinP1I GCGC 2 cut(s) 41, 116
HinfI GANTC 2 cut(s) 245, 490
HphI GGTGA 2 cut(s) 103, 293
Hpy188I TCNGA 3 cut(s) 125, 325, 381
Hpy99I CGWCG 2 cut(s) 48, 539
HpyAV CCTTC 7 cut(s) 42, 202, 337, 355, 361, 430, 439
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 213, 292
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 263, 266, 309, 506
HpyF3I CTNAG 3 cut(s) 122, 138, 165
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 3 cut(s) 113, 175, 217
HspAI GCGC 2 cut(s) 41, 116
Kzo9I GATC 4 cut(s) 125, 305, 320, 511
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 65, 388, 500, 507
Lsp1109I GCAGC 8 cut(s) 142, 145, 154, 188, 244, 253, 269, 275
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 537
MalI GATC 4 cut(s) 127, 307, 322, 513
MbiI CCGCTC 2 cut(s) 137, 352
MboI GATC 4 cut(s) 125, 305, 320, 511
MboII GAAGA 6 cut(s) 27, 496, 499, 533, 536, 539
MflI RGATCY 2 cut(s) 125, 320
MluCI AATT 3 cut(s) 187, 394, 470
MnlI CCTC 9 cut(s) 82, 129, 141, 214, 323, 331, 349, 414, 433
MroXI GAANNNNTTC 1 cut(s) 191
MspA1I CMGCKG 2 cut(s) 260, 266
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 5 cut(s) 148, 263, 266, 309, 506
NdeII GATC 4 cut(s) 125, 305, 320, 511
NlaIII CATG 3 cut(s) 113, 175, 217
NspV TTCGAA 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 245, 490
PspFI CCCAGC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 2 cut(s) 125, 320
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 225, 415
RsaNI GTAC 2 cut(s) 224, 414
Sau3AI GATC 4 cut(s) 125, 305, 320, 511
Sau96I GGNCC 1 cut(s) 106
SetI ASST 7 cut(s) 8, 23, 93, 171, 268, 450, 540
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 1 cut(s) 106
Sse9I AATT 3 cut(s) 187, 394, 470
SsiI CCGC 7 cut(s) 55, 135, 260, 310, 352, 479, 497
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 540
TaqI TCGA 3 cut(s) 315, 332, 434
TasI AATT 3 cut(s) 187, 394, 470
TauI GCSGC 3 cut(s) 263, 482, 500
TfiI GAWTC 2 cut(s) 245, 490
TscAI CASTG 1 cut(s) 189
TseI GCWGC 8 cut(s) 142, 155, 158, 176, 232, 257, 263, 266
TspDTI ATGAA 2 cut(s) 126, 230
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.